Wall clock time and date at job start Tue Mar 31 2020 05:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38683 * 119.27320 * 2 1 4 4 C 1.38014 * 119.62398 * 180.02562 * 3 2 1 5 5 C 1.41001 * 118.28281 * 359.97438 * 4 3 2 6 6 C 1.41018 * 120.70481 * 180.02562 * 5 4 3 7 7 H 1.07995 * 119.99706 * 152.43891 * 6 5 4 8 8 C 1.39950 * 120.00108 * 332.44318 * 6 5 4 9 9 N 1.30865 * 120.00125 * 160.63626 * 8 6 5 10 10 Si 1.86800 * 119.99897 * 340.63259 * 8 6 5 11 11 H 1.48501 * 109.47271 * 90.93555 * 10 8 6 12 12 H 1.48503 * 109.47013 * 210.93350 * 10 8 6 13 13 H 1.48503 * 109.47136 * 330.93351 * 10 8 6 14 14 C 1.41703 * 118.58709 * 0.02562 * 5 4 3 15 15 N 1.38086 * 119.90237 * 179.97438 * 14 5 4 16 16 C 1.46973 * 110.99839 * 267.18525 * 15 14 5 17 17 C 1.53372 * 109.84071 * 165.23130 * 16 15 14 18 18 N 1.46725 * 108.24665 * 50.15567 * 17 16 15 19 19 N 1.28037 * 128.73434 * 163.21775 * 18 17 16 20 20 N 1.29169 * 110.05756 * 180.32022 * 19 18 17 21 21 C 1.34119 * 108.95320 * 359.84371 * 20 19 18 22 22 C 1.34278 * 106.21742 * 0.04912 * 21 20 19 23 23 C 1.47433 * 111.00190 * 143.13271 * 15 14 5 24 24 N 1.31967 * 119.27999 * 180.26997 * 2 1 3 25 25 H 1.09006 * 109.46435 * 90.00726 * 1 2 3 26 26 H 1.08998 * 109.46903 * 209.99708 * 1 2 3 27 27 H 1.08994 * 109.47210 * 330.00595 * 1 2 3 28 28 H 1.07994 * 120.18719 * 0.03975 * 3 2 1 29 29 H 1.07996 * 120.85610 * 180.02562 * 4 3 2 30 30 H 0.96996 * 120.00157 * 179.97438 * 9 8 6 31 31 H 1.08995 * 109.41149 * 285.34798 * 16 15 14 32 32 H 1.09000 * 109.40541 * 45.19957 * 16 15 14 33 33 H 1.09006 * 109.70445 * 169.84411 * 17 16 15 34 34 H 1.08994 * 109.71202 * 290.46474 * 17 16 15 35 35 H 1.08005 * 126.88588 * 180.02562 * 21 20 19 36 36 H 1.08995 * 109.75657 * 293.27111 * 23 15 14 37 37 H 1.08997 * 109.75616 * 53.97046 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5653 1.2182 -0.0005 5 6 4.2410 -0.0194 -0.0005 6 6 5.6502 -0.0704 -0.0005 7 1 6.1598 -0.9185 0.4323 8 6 6.3884 0.9781 -0.5612 9 7 7.6480 1.1350 -0.2429 10 14 5.5756 2.1537 -1.7641 11 1 5.0076 3.3075 -1.0215 12 1 6.5847 2.6407 -2.7387 13 1 4.4884 1.4475 -2.4884 14 6 3.4738 -1.2108 -0.0005 15 7 4.1075 -2.4376 -0.0010 16 6 4.2888 -2.9362 -1.3717 17 6 5.2991 -4.0901 -1.3765 18 7 4.8999 -5.0545 -0.3452 19 7 5.2698 -6.2717 -0.2005 20 7 4.6883 -6.7920 0.8289 21 6 3.8963 -5.8691 1.3945 22 6 4.0262 -4.7577 0.6523 23 6 3.3720 -3.4126 0.8248 24 7 2.1525 -1.1511 -0.0054 25 1 -0.3632 -0.0001 -1.0278 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 1.6364 2.1399 0.0006 29 1 4.1135 2.1487 -0.0001 30 1 8.1597 1.8614 -0.6318 31 1 3.3330 -3.2899 -1.7579 32 1 4.6590 -2.1295 -2.0044 33 1 5.2988 -4.5748 -2.3529 34 1 6.2955 -3.7074 -1.1558 35 1 3.2777 -5.9950 2.2710 36 1 3.4139 -3.1142 1.8723 37 1 2.3335 -3.4635 0.4976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154829482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:21 Heat of formation + Delta-G solvation = 145.117132 kcal Electronic energy + Delta-G solvation = -22503.939583 eV Core-core repulsion = 19283.596311 eV Total energy + Delta-G solvation = -3220.343272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.07507 -39.49259 -37.14001 -34.35277 -34.03747 -32.05275 -31.58279 -30.43486 -29.16881 -28.12402 -25.62980 -24.08353 -23.29901 -22.33609 -21.79336 -20.62371 -19.28120 -17.61679 -17.15079 -16.60834 -16.14366 -15.86518 -15.12448 -14.83831 -14.08614 -13.88493 -13.72865 -13.55317 -13.43301 -13.26937 -12.60477 -12.38599 -12.18076 -12.13419 -11.74603 -11.71302 -11.46353 -11.26974 -11.16831 -10.89223 -10.67833 -10.46926 -10.13052 -9.73593 -9.63174 -9.03586 -8.75190 -8.60707 -8.08732 -7.55797 -7.24877 -4.70415 1.89511 2.13595 2.41445 2.61551 2.81534 2.88482 2.99094 3.07393 3.70103 4.05646 4.24197 4.54727 4.70121 4.95136 5.12519 5.22268 5.24752 5.36246 5.52460 5.72211 5.73944 5.82005 5.89181 5.95512 6.00677 6.09655 6.15758 6.22024 6.34300 6.40509 6.43709 6.63318 6.77983 6.88004 7.07690 7.27504 7.30399 7.57009 7.88196 8.11350 8.44662 8.48901 8.77371 9.16110 9.74602 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.016190 B = 0.006604 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.093829 B = 4238.889974 C = 5518.142660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.012 4.012 3 C -0.114 4.114 4 C -0.214 4.214 5 C 0.068 3.932 6 C -0.401 4.401 7 H 0.107 0.893 8 C 0.080 3.920 9 N -0.784 5.784 10 Si 0.912 3.088 11 H -0.266 1.266 12 H -0.287 1.287 13 H -0.249 1.249 14 C 0.168 3.832 15 N -0.450 5.450 16 C 0.048 3.952 17 C 0.121 3.879 18 N -0.278 5.278 19 N -0.093 5.093 20 N -0.283 5.283 21 C -0.052 4.052 22 C -0.005 4.005 23 C 0.130 3.870 24 N -0.477 5.477 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.290 0.710 31 H 0.047 0.953 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.188 0.812 36 H 0.100 0.900 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.214 -1.626 -2.312 6.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.151 4.151 3 C -0.134 4.134 4 C -0.239 4.239 5 C 0.061 3.939 6 C -0.428 4.428 7 H 0.125 0.875 8 C -0.142 4.142 9 N -0.406 5.406 10 Si 0.738 3.262 11 H -0.192 1.192 12 H -0.214 1.214 13 H -0.172 1.172 14 C -0.066 4.066 15 N -0.172 5.172 16 C -0.081 4.081 17 C 0.000 4.000 18 N -0.074 5.074 19 N -0.072 5.072 20 N -0.148 5.148 21 C -0.209 4.209 22 C -0.137 4.137 23 C 0.001 3.999 24 N -0.189 5.189 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.122 0.878 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.205 0.795 36 H 0.118 0.882 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.016 -3.389 -2.715 6.634 hybrid contribution -0.953 2.335 -0.399 2.553 sum -5.969 -1.053 -3.113 6.814 Atomic orbital electron populations 1.20282 0.91214 1.01093 1.00557 1.19986 0.94722 0.87835 1.12516 1.21354 0.94664 0.97480 0.99935 1.21394 0.93856 0.97456 1.11237 1.18061 0.94278 0.89910 0.91636 1.19497 0.89379 1.04453 1.29519 0.87540 1.26333 0.94772 0.96799 0.96302 1.69706 1.09107 1.27767 1.34040 0.86357 0.79394 0.80367 0.80079 1.19214 1.21426 1.17198 1.18982 0.86515 0.88974 1.12149 1.59522 1.47293 1.00756 1.09584 1.22459 0.97297 0.96355 0.91941 1.22491 1.01618 0.86657 0.89210 1.47433 1.29068 1.09707 1.21170 1.78100 1.20849 0.92395 1.15842 1.75335 1.09391 1.26243 1.03881 1.22919 1.04508 0.89941 1.03571 1.22295 0.98771 0.99577 0.93073 1.20733 0.95703 0.83587 0.99893 1.66682 1.10428 1.30516 1.11224 0.93164 0.92506 0.92737 0.87759 0.86844 0.89922 0.93492 0.87254 0.87731 0.87148 0.79543 0.88239 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.15 36.01 0.37 -0.76 16 2 C -0.01 -0.24 6.79 -82.37 -0.56 -0.80 16 3 C -0.11 -2.25 9.69 -39.50 -0.38 -2.63 16 4 C -0.21 -4.64 7.42 -38.62 -0.29 -4.93 16 5 C 0.07 1.54 5.17 -106.47 -0.55 0.99 16 6 C -0.40 -9.52 9.19 -37.89 -0.35 -9.87 16 7 H 0.11 2.72 7.82 -52.49 -0.41 2.31 16 8 C 0.08 1.85 5.41 -17.32 -0.09 1.76 16 9 N -0.78 -18.68 13.93 55.55 0.77 -17.91 16 10 Si 0.91 18.43 24.57 -169.99 -4.18 14.25 16 11 H -0.27 -5.25 6.44 56.52 0.36 -4.89 16 12 H -0.29 -5.63 7.11 56.52 0.40 -5.22 16 13 H -0.25 -5.16 7.04 56.52 0.40 -4.76 16 14 C 0.17 3.54 5.53 -155.03 -0.86 2.68 16 15 N -0.45 -8.43 3.88 -173.40 -0.67 -9.10 16 16 C 0.05 0.77 5.46 -3.59 -0.02 0.75 16 17 C 0.12 1.73 7.48 -3.73 -0.03 1.70 16 18 N -0.28 -4.66 3.79 -56.87 -0.22 -4.88 16 19 N -0.09 -1.68 13.27 60.35 0.80 -0.88 16 20 N -0.28 -5.11 12.43 30.10 0.37 -4.74 16 21 C -0.05 -0.83 12.03 -17.95 -0.22 -1.04 16 22 C 0.00 -0.08 6.71 -82.26 -0.55 -0.63 16 23 C 0.13 2.18 5.58 -4.75 -0.03 2.16 16 24 N -0.48 -9.77 8.90 -8.11 -0.07 -9.85 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.73 8.07 -51.93 -0.42 0.31 16 28 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.11 2.43 4.47 -52.49 -0.23 2.20 16 30 H 0.29 6.24 8.30 -40.82 -0.34 5.91 16 31 H 0.05 0.74 8.07 -51.93 -0.42 0.33 16 32 H 0.11 1.79 7.98 -51.93 -0.41 1.38 16 33 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.19 2.26 8.06 -52.48 -0.42 1.83 16 36 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 37 H 0.08 1.33 7.35 -51.93 -0.38 0.95 16 LS Contribution 306.88 15.07 4.62 4.62 Total: -1.00 -27.03 306.88 -6.53 -33.56 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.41 Total: 5.54 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -3.56 Total: -10.62 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.99 Total: -47.35 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -4.18 Total: 14.25 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.03 -6.53 -33.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154829482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.678 kcal (2) G-P(sol) polarization free energy of solvation -27.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds