Wall clock time and date at job start Tue Mar 31 2020 05:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38683 * 119.27320 * 2 1 4 4 C 1.38014 * 119.62398 * 180.02562 * 3 2 1 5 5 C 1.41001 * 118.28281 * 359.97438 * 4 3 2 6 6 C 1.41018 * 120.70481 * 180.02562 * 5 4 3 7 7 H 1.07995 * 119.99706 * 152.43891 * 6 5 4 8 8 C 1.39950 * 120.00108 * 332.44318 * 6 5 4 9 9 N 1.30865 * 120.00125 * 160.63626 * 8 6 5 10 10 Si 1.86800 * 119.99897 * 340.63259 * 8 6 5 11 11 H 1.48501 * 109.47271 * 90.93555 * 10 8 6 12 12 H 1.48503 * 109.47013 * 210.93350 * 10 8 6 13 13 H 1.48503 * 109.47136 * 330.93351 * 10 8 6 14 14 C 1.41703 * 118.58709 * 0.02562 * 5 4 3 15 15 N 1.38086 * 119.90237 * 179.97438 * 14 5 4 16 16 C 1.46973 * 110.99839 * 267.18525 * 15 14 5 17 17 C 1.53372 * 109.84071 * 165.23130 * 16 15 14 18 18 N 1.46725 * 108.24665 * 50.15567 * 17 16 15 19 19 N 1.28037 * 128.73434 * 163.21775 * 18 17 16 20 20 N 1.29169 * 110.05756 * 180.32022 * 19 18 17 21 21 C 1.34119 * 108.95320 * 359.84371 * 20 19 18 22 22 C 1.34278 * 106.21742 * 0.04912 * 21 20 19 23 23 C 1.47433 * 111.00190 * 143.13271 * 15 14 5 24 24 N 1.31967 * 119.27999 * 180.26997 * 2 1 3 25 25 H 1.09006 * 109.46435 * 90.00726 * 1 2 3 26 26 H 1.08998 * 109.46903 * 209.99708 * 1 2 3 27 27 H 1.08994 * 109.47210 * 330.00595 * 1 2 3 28 28 H 1.07994 * 120.18719 * 0.03975 * 3 2 1 29 29 H 1.07996 * 120.85610 * 180.02562 * 4 3 2 30 30 H 0.96996 * 120.00157 * 179.97438 * 9 8 6 31 31 H 1.08995 * 109.41149 * 285.34798 * 16 15 14 32 32 H 1.09000 * 109.40541 * 45.19957 * 16 15 14 33 33 H 1.09006 * 109.70445 * 169.84411 * 17 16 15 34 34 H 1.08994 * 109.71202 * 290.46474 * 17 16 15 35 35 H 1.08005 * 126.88588 * 180.02562 * 21 20 19 36 36 H 1.08995 * 109.75657 * 293.27111 * 23 15 14 37 37 H 1.08997 * 109.75616 * 53.97046 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5653 1.2182 -0.0005 5 6 4.2410 -0.0194 -0.0005 6 6 5.6502 -0.0704 -0.0005 7 1 6.1598 -0.9185 0.4323 8 6 6.3884 0.9781 -0.5612 9 7 7.6480 1.1350 -0.2429 10 14 5.5756 2.1537 -1.7641 11 1 5.0076 3.3075 -1.0215 12 1 6.5847 2.6407 -2.7387 13 1 4.4884 1.4475 -2.4884 14 6 3.4738 -1.2108 -0.0005 15 7 4.1075 -2.4376 -0.0010 16 6 4.2888 -2.9362 -1.3717 17 6 5.2991 -4.0901 -1.3765 18 7 4.8999 -5.0545 -0.3452 19 7 5.2698 -6.2717 -0.2005 20 7 4.6883 -6.7920 0.8289 21 6 3.8963 -5.8691 1.3945 22 6 4.0262 -4.7577 0.6523 23 6 3.3720 -3.4126 0.8248 24 7 2.1525 -1.1511 -0.0054 25 1 -0.3632 -0.0001 -1.0278 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 1.6364 2.1399 0.0006 29 1 4.1135 2.1487 -0.0001 30 1 8.1597 1.8614 -0.6318 31 1 3.3330 -3.2899 -1.7579 32 1 4.6590 -2.1295 -2.0044 33 1 5.2988 -4.5748 -2.3529 34 1 6.2955 -3.7074 -1.1558 35 1 3.2777 -5.9950 2.2710 36 1 3.4139 -3.1142 1.8723 37 1 2.3335 -3.4635 0.4976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154829482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:20 Heat of formation + Delta-G solvation = 128.195043 kcal Electronic energy + Delta-G solvation = -22504.673379 eV Core-core repulsion = 19283.596311 eV Total energy + Delta-G solvation = -3221.077069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.39235 -41.05531 -38.57987 -36.01897 -35.37996 -33.59988 -33.07047 -31.81959 -30.53366 -29.63791 -27.05519 -25.51887 -24.76105 -23.65854 -23.35233 -22.16300 -20.63557 -19.32775 -18.45758 -17.97787 -17.59424 -17.48262 -16.57363 -16.27217 -15.48861 -15.34778 -15.21505 -14.94051 -14.87852 -14.63772 -14.12301 -13.71186 -13.66605 -13.51927 -13.23944 -12.99856 -12.88511 -12.69622 -12.54829 -12.42016 -12.05037 -12.02391 -11.79818 -11.30719 -11.02700 -10.46750 -10.23041 -10.20671 -9.64679 -9.09589 -8.94915 -6.45026 0.51067 0.58496 0.75536 1.25652 1.35854 1.38539 1.46406 1.51789 2.06061 2.56815 2.67725 3.28913 3.36283 3.44348 3.77715 3.91772 3.96745 4.10578 4.24148 4.25752 4.46953 4.49206 4.52733 4.56109 4.66079 4.73658 4.84631 4.86482 4.98388 4.99108 5.15819 5.19355 5.27369 5.54432 5.57014 5.65083 5.87324 6.00103 6.19299 6.36869 6.72852 6.82348 7.44344 7.54278 8.10577 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.016190 B = 0.006604 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.093829 B = 4238.889974 C = 5518.142660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.005 4.005 3 C -0.122 4.122 4 C -0.224 4.224 5 C 0.049 3.951 6 C -0.427 4.427 7 H 0.072 0.928 8 C 0.051 3.949 9 N -0.828 5.828 10 Si 0.960 3.040 11 H -0.256 1.256 12 H -0.278 1.278 13 H -0.257 1.257 14 C 0.172 3.828 15 N -0.469 5.469 16 C 0.054 3.946 17 C 0.123 3.877 18 N -0.278 5.278 19 N -0.110 5.110 20 N -0.305 5.305 21 C -0.043 4.043 22 C -0.015 4.015 23 C 0.141 3.859 24 N -0.487 5.487 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.139 0.861 29 H 0.113 0.887 30 H 0.296 0.704 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.138 0.862 34 H 0.106 0.894 35 H 0.221 0.779 36 H 0.098 0.902 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.817 -1.228 -2.784 9.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.143 4.143 3 C -0.141 4.141 4 C -0.250 4.250 5 C 0.042 3.958 6 C -0.456 4.456 7 H 0.091 0.909 8 C -0.166 4.166 9 N -0.453 5.453 10 Si 0.784 3.216 11 H -0.182 1.182 12 H -0.205 1.205 13 H -0.181 1.181 14 C -0.061 4.061 15 N -0.191 5.191 16 C -0.074 4.074 17 C 0.003 3.997 18 N -0.074 5.074 19 N -0.089 5.089 20 N -0.170 5.170 21 C -0.201 4.201 22 C -0.148 4.148 23 C 0.012 3.988 24 N -0.200 5.200 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.157 0.843 29 H 0.131 0.869 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.156 0.844 34 H 0.124 0.876 35 H 0.238 0.762 36 H 0.116 0.884 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.608 -3.010 -3.190 8.782 hybrid contribution -0.372 2.143 -0.193 2.183 sum -7.980 -0.867 -3.383 8.711 Atomic orbital electron populations 1.20382 0.87843 1.02678 1.02030 1.20884 0.97049 0.87475 1.08927 1.21743 0.93969 0.99222 0.99200 1.21575 0.95069 0.97060 1.11269 1.18257 0.94064 0.91211 0.92248 1.19251 0.90039 1.04277 1.32039 0.90945 1.26846 0.94985 0.97740 0.97039 1.69736 1.10285 1.29293 1.35978 0.85616 0.78493 0.78959 0.78518 1.18173 1.20475 1.18111 1.19174 0.86812 0.89494 1.10618 1.59449 1.47634 1.00744 1.11264 1.22404 0.97958 0.96608 0.90401 1.22611 1.00673 0.86023 0.90387 1.47626 1.28783 1.09604 1.21436 1.78065 1.21497 0.92918 1.16392 1.75315 1.10223 1.27119 1.04338 1.23501 1.03721 0.88929 1.03908 1.22384 0.99251 0.99666 0.93508 1.20619 0.95520 0.83224 0.99434 1.66875 1.09943 1.31139 1.12000 0.91604 0.91999 0.90177 0.84327 0.86911 0.89301 0.92915 0.87971 0.84368 0.87565 0.76201 0.88426 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.88 10.15 71.24 0.72 -1.15 16 2 C 0.00 -0.16 6.79 42.65 0.29 0.13 16 3 C -0.12 -4.42 9.69 22.32 0.22 -4.21 16 4 C -0.22 -9.45 7.42 22.89 0.17 -9.28 16 5 C 0.05 2.22 5.17 -21.06 -0.11 2.11 16 6 C -0.43 -21.11 9.19 23.37 0.21 -20.90 16 7 H 0.07 3.96 7.82 -2.91 -0.02 3.93 16 8 C 0.05 2.45 5.41 85.25 0.46 2.91 16 9 N -0.83 -41.03 13.93 21.83 0.30 -40.73 16 10 Si 0.96 37.92 24.57 68.60 1.69 39.61 16 11 H -0.26 -9.60 6.44 99.48 0.64 -8.96 16 12 H -0.28 -10.44 7.11 99.48 0.71 -9.73 16 13 H -0.26 -10.37 7.04 99.48 0.70 -9.67 16 14 C 0.17 7.18 5.53 134.05 0.74 7.92 16 15 N -0.47 -17.56 3.88 -702.51 -2.72 -20.28 16 16 C 0.05 1.73 5.46 86.41 0.47 2.20 16 17 C 0.12 3.45 7.48 86.46 0.65 4.10 16 18 N -0.28 -9.10 3.79 -333.84 -1.26 -10.37 16 19 N -0.11 -3.91 13.27 37.02 0.49 -3.42 16 20 N -0.30 -10.71 12.43 -58.69 -0.73 -11.44 16 21 C -0.04 -1.30 12.03 83.44 1.00 -0.29 16 22 C -0.02 -0.49 6.71 40.98 0.28 -0.21 16 23 C 0.14 4.61 5.58 85.41 0.48 5.09 16 24 N -0.49 -19.03 8.90 -179.57 -1.60 -20.63 16 25 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.08 1.72 8.07 -2.39 -0.02 1.70 16 28 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 29 H 0.11 4.72 4.47 -2.91 -0.01 4.70 16 30 H 0.30 13.20 8.30 -92.71 -0.77 12.43 16 31 H 0.05 1.61 8.07 -2.39 -0.02 1.59 16 32 H 0.10 3.39 7.98 -2.39 -0.02 3.37 16 33 H 0.14 2.91 8.14 -2.38 -0.02 2.89 16 34 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 35 H 0.22 4.75 8.06 -2.91 -0.02 4.72 16 36 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.08 2.61 7.35 -2.39 -0.02 2.59 16 Total: -1.00 -58.68 306.88 2.77 -55.91 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 1.02 Total: 22.96 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 5.58 Total: -11.60 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -5.52 Total: -106.87 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 1.69 Total: 39.61 kcal Total: -58.68 2.77 -55.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154829482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.103 kcal (2) G-P(sol) polarization free energy of solvation -58.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds