Wall clock time and date at job start Tue Mar 31 2020 05:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31476 * 119.81651 * 2 1 4 4 C 1.32748 * 121.73219 * 180.26760 * 3 2 1 5 5 N 1.38368 * 119.43289 * 179.74697 * 4 3 2 6 6 C 1.46970 * 110.99688 * 359.72614 * 5 4 3 7 7 C 1.53378 * 109.77172 * 165.18980 * 6 5 4 8 8 N 1.46732 * 108.24913 * 50.19400 * 7 6 5 9 9 N 1.28026 * 128.73839 * 163.23098 * 8 7 6 10 10 N 1.28946 * 110.08283 * 180.21169 * 9 8 7 11 11 C 1.34120 * 108.96678 * 359.93781 * 10 9 8 12 12 C 1.34275 * 106.21706 * 359.96791 * 11 10 9 13 13 C 1.47449 * 110.95250 * 235.71565 * 5 4 3 14 14 C 1.39709 * 121.13331 * 359.46698 * 4 3 2 15 15 C 1.36561 * 119.49485 * 0.26171 * 14 4 3 16 16 C 1.40758 * 119.81125 * 179.74129 * 2 1 3 17 17 C 1.41195 * 120.57277 * 359.97438 * 16 2 1 18 18 H 1.07992 * 120.00453 * 334.76097 * 17 16 2 19 19 C 1.39880 * 119.99978 * 154.75805 * 17 16 2 20 20 N 1.30896 * 119.99621 * 343.67139 * 19 17 16 21 21 Si 1.86796 * 120.00243 * 163.66920 * 19 17 16 22 22 H 1.48503 * 109.47096 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47089 * 119.99979 * 21 19 17 24 24 H 1.48497 * 109.47146 * 240.00499 * 21 19 17 25 25 H 1.08992 * 109.47361 * 270.25627 * 1 2 3 26 26 H 1.08998 * 109.46750 * 30.26338 * 1 2 3 27 27 H 1.09002 * 109.46702 * 150.25701 * 1 2 3 28 28 H 1.08993 * 109.41353 * 45.12027 * 6 5 4 29 29 H 1.08997 * 109.41426 * 285.26010 * 6 5 4 30 30 H 1.08999 * 109.70277 * 169.88143 * 7 6 5 31 31 H 1.08996 * 109.70505 * 290.50351 * 7 6 5 32 32 H 1.08000 * 126.88970 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.80168 * 54.06672 * 13 5 4 34 34 H 1.08998 * 109.79269 * 293.31343 * 13 5 4 35 35 H 1.08002 * 120.24796 * 180.27831 * 14 4 3 36 36 H 1.08000 * 120.79390 * 179.97438 * 15 14 4 37 37 H 0.97001 * 119.99750 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1608 1.1407 0.0000 4 6 3.4875 1.1851 -0.0053 5 7 4.1268 2.4122 -0.0103 6 6 3.1532 3.5132 -0.0154 7 6 3.8547 4.8278 0.3481 8 7 5.0448 4.9632 -0.4993 9 7 5.7426 6.0094 -0.7394 10 7 6.7111 5.7215 -1.5405 11 6 6.6516 4.4167 -1.8451 12 6 5.5917 3.9251 -1.1833 13 6 5.0539 2.5191 -1.1519 14 6 4.2495 0.0141 0.0000 15 6 3.6199 -1.1977 0.0054 16 6 2.2068 -1.2213 0.0055 17 6 1.5091 -2.4488 0.0116 18 1 0.5069 -2.4983 0.4110 19 6 2.1158 -3.6007 -0.4998 20 7 3.1747 -3.4990 -1.2626 21 14 1.4151 -5.2841 -0.0940 22 1 0.2246 -5.1273 0.7796 23 1 1.0200 -5.9715 -1.3496 24 1 2.4434 -6.0916 0.6100 25 1 -0.3633 0.0046 1.0276 26 1 -0.3633 0.8876 -0.5179 27 1 -0.3633 -0.8923 -0.5099 28 1 2.3696 3.3072 0.7136 29 1 2.7108 3.6011 -1.0077 30 1 3.1801 5.6655 0.1711 31 1 4.1505 4.8087 1.3970 32 1 7.3219 3.8709 -2.4926 33 1 4.5229 2.3071 -2.0799 34 1 5.8751 1.8133 -1.0278 35 1 5.3282 0.0669 0.0002 36 1 4.1882 -2.1161 0.0092 37 1 3.5952 -4.2978 -1.6175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154829751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:24 Heat of formation + Delta-G solvation = 143.240946 kcal Electronic energy + Delta-G solvation = -21931.793511 eV Core-core repulsion = 18711.368882 eV Total energy + Delta-G solvation = -3220.424629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.27715 -39.43768 -37.28105 -34.53114 -33.78475 -31.94809 -31.50816 -30.24593 -29.59077 -27.11842 -25.89641 -24.64462 -23.36937 -22.48339 -21.17874 -20.42010 -19.45445 -17.48663 -17.32703 -16.75794 -16.09086 -15.65004 -15.13689 -14.77344 -14.23065 -14.11077 -13.84282 -13.63432 -13.11688 -12.91781 -12.53279 -12.35899 -12.02307 -11.82928 -11.69752 -11.47062 -11.38381 -11.29266 -11.16171 -11.02537 -10.79985 -10.71771 -9.98709 -9.89350 -9.60382 -9.20952 -8.76956 -8.42158 -8.25804 -7.29261 -6.97779 -4.55711 1.71927 2.35653 2.47180 2.65944 2.76646 2.94127 2.96999 2.99769 3.73547 3.92425 4.35632 4.44054 4.51693 4.86048 5.01441 5.10103 5.29362 5.37946 5.51232 5.56607 5.63662 5.77816 5.89241 6.02473 6.15477 6.24661 6.28814 6.44882 6.52895 6.57136 6.70702 6.79360 6.86145 7.05934 7.12629 7.19759 7.62949 7.79991 7.92221 8.28789 8.52659 8.58416 8.61934 9.37068 9.91131 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.034727 B = 0.003922 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.091789 B = 7136.887469 C = 7765.867110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.018 3.982 3 N -0.489 5.489 4 C 0.152 3.848 5 N -0.464 5.464 6 C 0.052 3.948 7 C 0.118 3.882 8 N -0.280 5.280 9 N -0.090 5.090 10 N -0.280 5.280 11 C -0.049 4.049 12 C -0.008 4.008 13 C 0.126 3.874 14 C -0.144 4.144 15 C -0.118 4.118 16 C 0.062 3.938 17 C -0.441 4.441 18 H 0.086 0.914 19 C 0.073 3.927 20 N -0.788 5.788 21 Si 0.912 3.088 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.270 1.270 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.052 0.948 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.190 0.810 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.129 0.871 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.396 5.064 0.664 5.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.125 4.125 3 N -0.201 5.201 4 C -0.077 4.077 5 N -0.184 5.184 6 C -0.077 4.077 7 C -0.004 4.004 8 N -0.076 5.076 9 N -0.069 5.069 10 N -0.146 5.146 11 C -0.206 4.206 12 C -0.140 4.140 13 C -0.002 4.002 14 C -0.166 4.166 15 C -0.143 4.143 16 C 0.057 3.943 17 C -0.470 4.470 18 H 0.104 0.896 19 C -0.146 4.146 20 N -0.412 5.412 21 Si 0.736 3.264 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.195 1.195 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.137 0.863 29 H 0.070 0.930 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.207 0.793 33 H 0.084 0.916 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.147 0.853 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.547 7.305 1.252 7.432 hybrid contribution -0.246 -2.813 -0.694 2.908 sum 0.301 4.492 0.558 4.537 Atomic orbital electron populations 1.20246 0.90999 1.01203 1.00364 1.20817 0.94882 0.87511 1.09262 1.66598 1.08025 1.31329 1.14169 1.18572 0.88470 0.87737 1.12968 1.59662 1.18274 1.01475 1.38997 1.22233 0.94561 0.87448 1.03421 1.22605 0.82780 1.00325 0.94647 1.47473 1.22045 1.06032 1.32021 1.78044 1.02440 1.11244 1.15222 1.75286 1.14639 1.13841 1.10831 1.22976 0.99907 0.92272 1.05413 1.22153 0.98518 0.93092 1.00278 1.20965 0.96951 0.88951 0.93367 1.20801 0.98455 0.92365 1.04956 1.21318 0.94798 0.96429 1.01794 1.18302 0.92362 0.93136 0.90472 1.19589 1.01737 0.91787 1.33916 0.89553 1.25996 0.94244 1.01851 0.92493 1.69809 1.17524 1.32074 1.21841 0.86188 0.80188 0.80663 0.79408 1.18155 1.19797 1.19534 0.93335 0.93390 0.91324 0.86288 0.93014 0.87560 0.87805 0.79336 0.91597 0.87443 0.88022 0.85315 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 9.58 36.01 0.34 -1.00 16 2 C 0.02 0.40 6.86 -81.79 -0.56 -0.16 16 3 N -0.49 -10.52 8.34 -8.04 -0.07 -10.58 16 4 C 0.15 3.10 6.38 -155.12 -0.99 2.11 16 5 N -0.46 -7.89 4.68 -173.83 -0.81 -8.70 16 6 C 0.05 0.77 4.87 -3.59 -0.02 0.75 16 7 C 0.12 1.44 7.48 -3.72 -0.03 1.42 16 8 N -0.28 -4.22 3.79 -56.88 -0.22 -4.43 16 9 N -0.09 -1.50 13.26 60.35 0.80 -0.70 16 10 N -0.28 -4.68 12.43 30.10 0.37 -4.30 16 11 C -0.05 -0.70 12.03 -17.95 -0.22 -0.92 16 12 C -0.01 -0.12 6.71 -82.29 -0.55 -0.67 16 13 C 0.13 1.91 5.42 -4.74 -0.03 1.89 16 14 C -0.14 -3.03 9.21 -39.64 -0.36 -3.39 16 15 C -0.12 -2.75 8.73 -39.02 -0.34 -3.09 16 16 C 0.06 1.49 5.58 -106.65 -0.59 0.89 16 17 C -0.44 -10.38 8.14 -37.85 -0.31 -10.69 16 18 H 0.09 1.94 6.86 -52.49 -0.36 1.58 16 19 C 0.07 1.65 5.19 -17.34 -0.09 1.56 16 20 N -0.79 -18.35 10.95 55.54 0.61 -17.74 16 21 Si 0.91 16.87 29.59 -169.99 -5.03 11.84 16 22 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 23 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 24 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.30 6.76 -51.93 -0.35 0.94 16 28 H 0.12 1.80 7.26 -51.93 -0.38 1.43 16 29 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 30 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.19 2.03 8.06 -52.49 -0.42 1.61 16 33 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 34 H 0.11 1.51 7.14 -51.93 -0.37 1.14 16 35 H 0.10 1.91 7.23 -52.49 -0.38 1.53 16 36 H 0.13 3.09 6.26 -52.49 -0.33 2.76 16 37 H 0.28 6.00 8.30 -40.82 -0.34 5.66 16 LS Contribution 307.12 15.07 4.63 4.63 Total: -1.00 -27.22 307.12 -7.71 -34.93 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -4.25 Total: 6.36 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -3.74 Total: -11.30 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.69 Total: -46.45 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.03 Total: 11.84 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.22 -7.71 -34.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154829751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.174 kcal (2) G-P(sol) polarization free energy of solvation -27.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds