Wall clock time and date at job start Tue Mar 31 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38590 * 120.80348 * 2 1 4 4 N 1.32335 * 119.10723 * 179.97438 * 3 2 1 5 5 C 1.31802 * 120.81626 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.12126 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47072 * 90.00516 * 6 5 4 8 8 N 1.46496 * 109.47078 * 180.02562 * 7 6 5 9 9 C 1.38828 * 120.00008 * 180.02562 * 8 7 6 10 10 C 1.39968 * 119.96938 * 0.02562 * 9 8 7 11 11 N 1.32124 * 120.31761 * 180.02562 * 10 9 8 12 12 C 1.31932 * 120.27243 * 359.68855 * 11 10 9 13 13 C 1.40683 * 119.93140 * 0.54936 * 12 11 10 14 14 C 1.41273 * 120.15694 * 179.75722 * 13 12 11 15 15 H 1.08010 * 119.99817 * 5.95050 * 14 13 12 16 16 C 1.40053 * 120.00425 * 185.68121 * 14 13 12 17 17 N 1.30736 * 119.99552 * 354.03027 * 16 14 13 18 18 Si 1.86794 * 120.00429 * 174.02730 * 16 14 13 19 19 H 1.48501 * 109.47072 * 90.00132 * 18 16 14 20 20 H 1.48503 * 109.47339 * 210.00132 * 18 16 14 21 21 H 1.48498 * 109.47274 * 330.00430 * 18 16 14 22 22 N 1.32240 * 119.97108 * 179.97438 * 9 8 7 23 23 N 1.31798 * 121.75194 * 0.28409 * 5 4 3 24 24 C 1.32339 * 120.81639 * 359.43390 * 23 5 4 25 25 H 1.08998 * 109.47258 * 89.99705 * 1 2 3 26 26 H 1.09006 * 109.47442 * 210.00304 * 1 2 3 27 27 H 1.09009 * 109.46890 * 329.99964 * 1 2 3 28 28 H 1.08002 * 120.44906 * 359.95381 * 3 2 1 29 29 H 1.08999 * 109.47118 * 330.00486 * 6 5 4 30 30 H 1.08996 * 109.47058 * 209.99914 * 6 5 4 31 31 H 1.08992 * 109.46931 * 59.99379 * 7 6 5 32 32 H 1.08996 * 109.46688 * 299.99625 * 7 6 5 33 33 H 0.97003 * 119.99953 * 359.97438 * 8 7 6 34 34 H 1.08001 * 119.83675 * 0.02562 * 10 9 8 35 35 H 1.08003 * 120.03590 * 180.29651 * 12 11 10 36 36 H 0.97002 * 119.99564 * 179.97438 * 17 16 14 37 37 H 1.08003 * 120.44084 * 180.25276 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1904 0.0000 4 7 3.5395 1.1512 0.0005 5 6 4.1809 -0.0002 0.0015 6 6 5.6879 -0.0002 0.0027 7 6 6.1968 0.0003 1.4456 8 7 7.6617 0.0009 1.4467 9 6 8.3549 0.0009 2.6495 10 6 7.6535 -0.0002 3.8608 11 7 8.3063 0.0003 5.0095 12 6 9.6255 -0.0044 5.0248 13 6 10.3416 0.0018 3.8139 14 6 11.7543 0.0020 3.8247 15 1 12.2872 -0.0995 4.7587 16 6 12.4639 0.1282 2.6239 17 7 11.8242 0.1284 1.4837 18 14 14.3240 0.2964 2.6513 19 1 14.9439 -1.0515 2.5872 20 1 14.7657 1.1004 1.4834 21 1 14.7414 0.9740 3.9050 22 7 9.6773 0.0009 2.6499 23 7 3.5393 -1.1515 -0.0035 24 6 2.2165 -1.1905 0.0015 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8901 0.5139 28 1 1.6973 2.1373 -0.0008 29 1 6.0516 0.8895 -0.5112 30 1 6.0515 -0.8904 -0.5104 31 1 5.8329 -0.8894 1.9595 32 1 5.8331 0.8905 1.9587 33 1 8.1474 0.0005 0.6070 34 1 6.5735 -0.0015 3.8563 35 1 10.1552 -0.0088 5.9660 36 1 12.3157 0.2161 0.6520 37 1 1.6970 -2.1374 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154867515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:46 Heat of formation + Delta-G solvation = 87.127896 kcal Electronic energy + Delta-G solvation = -20666.410673 eV Core-core repulsion = 17443.552800 eV Total energy + Delta-G solvation = -3222.857874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.30027 -38.85585 -36.13236 -34.32864 -33.90038 -33.81611 -31.93047 -30.81279 -28.76213 -26.66791 -25.77846 -24.87965 -23.59120 -22.40076 -21.60860 -20.84752 -17.97807 -17.49174 -17.09577 -16.32555 -15.45844 -15.16313 -14.85513 -14.76015 -14.67004 -14.65900 -13.93600 -13.79073 -13.36995 -13.18960 -12.89557 -12.81051 -12.79314 -11.85112 -11.49045 -11.44315 -11.26205 -11.16257 -11.05829 -11.02157 -10.64308 -10.35584 -9.81539 -9.57661 -9.40184 -9.37817 -9.33974 -8.30921 -7.34740 -6.67780 -6.40869 -4.61656 0.62766 0.89053 2.74621 3.06849 3.09457 3.16149 3.32247 3.44817 3.65114 3.90547 3.97019 4.27305 4.34769 4.48739 4.51775 4.75849 5.08493 5.12276 5.16850 5.18605 5.30330 5.49411 5.63493 5.67666 5.92152 6.04385 6.15348 6.15951 6.23066 6.37877 6.57328 6.78438 6.83369 7.07925 7.17716 7.64074 7.92647 7.99260 8.08347 8.48061 8.59997 8.89944 9.46185 10.04687 10.22904 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.002938 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.173197 B = 9529.500848 C =10069.600380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.203 4.203 3 C 0.148 3.852 4 N -0.509 5.509 5 C 0.324 3.676 6 C -0.064 4.064 7 C 0.152 3.848 8 N -0.731 5.731 9 C 0.375 3.625 10 C -0.169 4.169 11 N -0.408 5.408 12 C -0.108 4.108 13 C 0.246 3.754 14 C -0.416 4.416 15 H 0.090 0.910 16 C 0.068 3.932 17 N -0.710 5.710 18 Si 0.911 3.089 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.260 1.260 22 N -0.508 5.508 23 N -0.509 5.509 24 C 0.148 3.852 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.167 0.833 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.397 0.603 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.274 0.726 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.168 0.029 -7.725 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.207 4.207 3 C -0.018 4.018 4 N -0.222 5.222 5 C 0.057 3.943 6 C -0.103 4.103 7 C 0.025 3.975 8 N -0.368 5.368 9 C 0.132 3.868 10 C -0.330 4.330 11 N -0.120 5.120 12 C -0.278 4.278 13 C 0.117 3.883 14 C -0.449 4.449 15 H 0.108 0.892 16 C -0.159 4.159 17 N -0.331 5.331 18 Si 0.734 3.266 19 H -0.193 1.193 20 H -0.201 1.201 21 H -0.183 1.183 22 N -0.235 5.235 23 N -0.222 5.222 24 C -0.018 4.018 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.184 0.816 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.232 0.768 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.085 0.915 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -16.363 0.045 -7.900 18.170 hybrid contribution -0.106 0.086 -0.437 0.458 sum -16.469 0.131 -8.336 18.459 Atomic orbital electron populations 1.20636 0.89180 1.03530 1.02762 1.21718 0.99129 0.95767 1.04080 1.23185 0.89576 0.98237 0.90812 1.68301 1.09899 1.30542 1.13428 1.22977 0.97516 0.83353 0.90471 1.20563 0.85601 1.05089 0.99041 1.20889 0.81405 1.01252 0.93915 1.43980 1.03315 1.83561 1.05948 1.19458 0.91207 0.90477 0.85692 1.21904 0.98117 1.24946 0.88073 1.67497 1.10030 1.05725 1.28699 1.22903 0.89877 1.16953 0.98046 1.19092 0.94255 0.88150 0.86764 1.19610 0.89764 1.41208 0.94349 0.89190 1.26132 1.00945 0.93610 0.95187 1.70116 1.37066 1.27676 0.98206 0.86274 0.81930 0.79203 0.79154 1.19337 1.20104 1.18341 1.69031 1.02627 1.23825 1.27986 1.68300 1.09895 1.30543 1.13433 1.23189 0.89577 0.98235 0.90809 0.90718 0.90930 0.90934 0.81589 0.88447 0.88442 0.92479 0.92481 0.76775 0.86451 0.85271 0.91517 0.81585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.47 10.06 36.01 0.36 -0.11 16 2 C -0.20 -1.67 5.91 -104.36 -0.62 -2.29 16 3 C 0.15 1.44 11.01 -17.20 -0.19 1.25 16 4 N -0.51 -6.60 10.34 -10.72 -0.11 -6.71 16 5 C 0.32 4.38 6.90 -157.19 -1.08 3.30 16 6 C -0.06 -0.86 5.77 -27.88 -0.16 -1.02 16 7 C 0.15 2.51 4.88 -4.04 -0.02 2.49 16 8 N -0.73 -14.74 5.72 -60.28 -0.34 -15.08 16 9 C 0.37 9.41 7.66 -155.01 -1.19 8.22 16 10 C -0.17 -4.24 10.50 -16.78 -0.18 -4.41 16 11 N -0.41 -10.80 10.47 -12.11 -0.13 -10.93 16 12 C -0.11 -2.87 10.97 -16.59 -0.18 -3.05 16 13 C 0.25 6.89 6.54 -84.84 -0.55 6.33 16 14 C -0.42 -11.06 9.15 -37.75 -0.35 -11.40 16 15 H 0.09 2.20 7.86 -52.48 -0.41 1.78 16 16 C 0.07 1.69 5.49 -17.34 -0.10 1.60 16 17 N -0.71 -18.51 11.51 55.55 0.64 -17.87 16 18 Si 0.91 18.25 29.56 -169.99 -5.03 13.23 16 19 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 22 N -0.51 -14.17 8.10 -10.14 -0.08 -14.25 16 23 N -0.51 -6.59 10.34 -10.72 -0.11 -6.70 16 24 C 0.15 1.44 11.01 -17.20 -0.19 1.25 16 25 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 27 H 0.07 0.27 8.10 -51.92 -0.42 -0.15 16 28 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 0.98 7.93 -51.93 -0.41 0.56 16 32 H 0.06 0.98 7.94 -51.93 -0.41 0.57 16 33 H 0.40 7.72 8.60 -40.82 -0.35 7.37 16 34 H 0.12 2.67 6.70 -52.49 -0.35 2.31 16 35 H 0.13 3.12 8.06 -52.48 -0.42 2.70 16 36 H 0.27 6.44 8.29 -40.82 -0.34 6.10 16 37 H 0.17 1.08 8.06 -52.48 -0.42 0.65 16 LS Contribution 325.32 15.07 4.90 4.90 Total: -1.00 -32.84 325.32 -9.15 -41.99 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -4.45 Total: 9.28 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -4.44 Total: 2.15 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -0.14 Total: -71.54 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.84 -9.15 -41.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154867515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.114 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds