Wall clock time and date at job start Tue Mar 31 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38590 * 120.80348 * 2 1 4 4 N 1.32335 * 119.10723 * 179.97438 * 3 2 1 5 5 C 1.31802 * 120.81626 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.12126 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47072 * 90.00516 * 6 5 4 8 8 N 1.46496 * 109.47078 * 180.02562 * 7 6 5 9 9 C 1.38828 * 120.00008 * 180.02562 * 8 7 6 10 10 C 1.39968 * 119.96938 * 0.02562 * 9 8 7 11 11 N 1.32124 * 120.31761 * 180.02562 * 10 9 8 12 12 C 1.31932 * 120.27243 * 359.68855 * 11 10 9 13 13 C 1.40683 * 119.93140 * 0.54936 * 12 11 10 14 14 C 1.41273 * 120.15694 * 179.75722 * 13 12 11 15 15 H 1.08010 * 119.99817 * 5.95050 * 14 13 12 16 16 C 1.40053 * 120.00425 * 185.68121 * 14 13 12 17 17 N 1.30736 * 119.99552 * 354.03027 * 16 14 13 18 18 Si 1.86794 * 120.00429 * 174.02730 * 16 14 13 19 19 H 1.48501 * 109.47072 * 90.00132 * 18 16 14 20 20 H 1.48503 * 109.47339 * 210.00132 * 18 16 14 21 21 H 1.48498 * 109.47274 * 330.00430 * 18 16 14 22 22 N 1.32240 * 119.97108 * 179.97438 * 9 8 7 23 23 N 1.31798 * 121.75194 * 0.28409 * 5 4 3 24 24 C 1.32339 * 120.81639 * 359.43390 * 23 5 4 25 25 H 1.08998 * 109.47258 * 89.99705 * 1 2 3 26 26 H 1.09006 * 109.47442 * 210.00304 * 1 2 3 27 27 H 1.09009 * 109.46890 * 329.99964 * 1 2 3 28 28 H 1.08002 * 120.44906 * 359.95381 * 3 2 1 29 29 H 1.08999 * 109.47118 * 330.00486 * 6 5 4 30 30 H 1.08996 * 109.47058 * 209.99914 * 6 5 4 31 31 H 1.08992 * 109.46931 * 59.99379 * 7 6 5 32 32 H 1.08996 * 109.46688 * 299.99625 * 7 6 5 33 33 H 0.97003 * 119.99953 * 359.97438 * 8 7 6 34 34 H 1.08001 * 119.83675 * 0.02562 * 10 9 8 35 35 H 1.08003 * 120.03590 * 180.29651 * 12 11 10 36 36 H 0.97002 * 119.99564 * 179.97438 * 17 16 14 37 37 H 1.08003 * 120.44084 * 180.25276 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1904 0.0000 4 7 3.5395 1.1512 0.0005 5 6 4.1809 -0.0002 0.0015 6 6 5.6879 -0.0002 0.0027 7 6 6.1968 0.0003 1.4456 8 7 7.6617 0.0009 1.4467 9 6 8.3549 0.0009 2.6495 10 6 7.6535 -0.0002 3.8608 11 7 8.3063 0.0003 5.0095 12 6 9.6255 -0.0044 5.0248 13 6 10.3416 0.0018 3.8139 14 6 11.7543 0.0020 3.8247 15 1 12.2872 -0.0995 4.7587 16 6 12.4639 0.1282 2.6239 17 7 11.8242 0.1284 1.4837 18 14 14.3240 0.2964 2.6513 19 1 14.9439 -1.0515 2.5872 20 1 14.7657 1.1004 1.4834 21 1 14.7414 0.9740 3.9050 22 7 9.6773 0.0009 2.6499 23 7 3.5393 -1.1515 -0.0035 24 6 2.2165 -1.1905 0.0015 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8901 0.5139 28 1 1.6973 2.1373 -0.0008 29 1 6.0516 0.8895 -0.5112 30 1 6.0515 -0.8904 -0.5104 31 1 5.8329 -0.8894 1.9595 32 1 5.8331 0.8905 1.9587 33 1 8.1474 0.0005 0.6070 34 1 6.5735 -0.0015 3.8563 35 1 10.1552 -0.0088 5.9660 36 1 12.3157 0.2161 0.6520 37 1 1.6970 -2.1374 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154867515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:46 Heat of formation + Delta-G solvation = 65.110278 kcal Electronic energy + Delta-G solvation = -20667.365429 eV Core-core repulsion = 17443.552800 eV Total energy + Delta-G solvation = -3223.812629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.11660 -40.80469 -37.60112 -35.83745 -35.24238 -34.73402 -33.65586 -32.32190 -30.34373 -27.81231 -27.53094 -25.64887 -24.83413 -24.21742 -22.87766 -22.46421 -19.40011 -18.80858 -18.51071 -17.67136 -17.11525 -16.80116 -16.48608 -16.13583 -16.02836 -15.38887 -15.30251 -14.82413 -14.81151 -14.43298 -14.01071 -13.92950 -13.36175 -13.25045 -13.17447 -12.99813 -12.76522 -12.69842 -12.52978 -12.01897 -11.90657 -11.83200 -11.71967 -11.39121 -11.33354 -10.24441 -10.21107 -10.12465 -9.33678 -8.52866 -8.33031 -6.63960 -0.17035 0.12497 0.83240 1.24447 1.43743 1.55647 1.60739 2.22457 2.28675 2.71914 2.83643 3.05125 3.20967 3.68304 3.87906 3.89199 3.94148 3.94250 4.10578 4.17730 4.22132 4.43400 4.48640 4.62926 4.67318 4.84482 4.84968 4.89987 4.96524 5.08912 5.14894 5.17339 5.21645 5.48752 5.69704 6.00349 6.09723 6.18767 6.64524 6.67126 6.98641 7.08280 7.44609 8.06324 8.35859 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.002938 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.173197 B = 9529.500848 C =10069.600380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.184 4.184 3 C 0.133 3.867 4 N -0.533 5.533 5 C 0.300 3.700 6 C -0.051 4.051 7 C 0.159 3.841 8 N -0.719 5.719 9 C 0.368 3.632 10 C -0.180 4.180 11 N -0.417 5.417 12 C -0.131 4.131 13 C 0.214 3.786 14 C -0.438 4.438 15 H 0.103 0.897 16 C 0.021 3.979 17 N -0.741 5.741 18 Si 0.995 3.005 19 H -0.260 1.260 20 H -0.268 1.268 21 H -0.253 1.253 22 N -0.538 5.538 23 N -0.533 5.533 24 C 0.133 3.867 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.196 0.804 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.400 0.600 34 H 0.138 0.862 35 H 0.145 0.855 36 H 0.283 0.717 37 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.087 0.134 -8.499 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.188 4.188 3 C -0.032 4.032 4 N -0.247 5.247 5 C 0.032 3.968 6 C -0.090 4.090 7 C 0.034 3.966 8 N -0.356 5.356 9 C 0.123 3.877 10 C -0.343 4.343 11 N -0.129 5.129 12 C -0.300 4.300 13 C 0.086 3.914 14 C -0.470 4.470 15 H 0.121 0.879 16 C -0.202 4.202 17 N -0.362 5.362 18 Si 0.814 3.186 19 H -0.185 1.185 20 H -0.193 1.193 21 H -0.176 1.176 22 N -0.266 5.266 23 N -0.247 5.247 24 C -0.032 4.032 25 H 0.108 0.892 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.213 0.787 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.236 0.764 34 H 0.155 0.845 35 H 0.162 0.838 36 H 0.094 0.906 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -17.338 0.147 -8.681 19.390 hybrid contribution -0.024 0.045 -0.261 0.266 sum -17.362 0.193 -8.941 19.530 Atomic orbital electron populations 1.20750 0.86139 1.04875 1.04058 1.22116 1.01075 0.94605 1.01023 1.23788 0.88753 1.00218 0.90458 1.68252 1.11722 1.30495 1.14240 1.22747 0.97230 0.84024 0.92763 1.20364 0.86510 1.05436 0.96687 1.20930 0.78981 1.00541 0.96196 1.44097 1.04720 1.82099 1.04634 1.19760 0.90893 0.89698 0.87319 1.22233 0.99043 1.25005 0.87976 1.67488 1.10121 1.05875 1.29380 1.23104 0.90123 1.18313 0.98460 1.19562 0.95424 0.89017 0.87409 1.20067 0.89753 1.41368 0.95837 0.87926 1.27136 1.06364 0.92549 0.94163 1.70194 1.39581 1.27336 0.99137 0.85010 0.74592 0.79462 0.79489 1.18507 1.19283 1.17603 1.69049 1.03807 1.25423 1.28306 1.68252 1.11715 1.30488 1.14239 1.23793 0.88754 1.00216 0.90449 0.89196 0.89608 0.89618 0.78710 0.88104 0.88081 0.93029 0.93058 0.76401 0.84502 0.83810 0.90605 0.78698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 10.06 71.24 0.72 0.16 16 2 C -0.18 -2.60 5.91 -19.70 -0.12 -2.72 16 3 C 0.13 2.35 11.01 84.70 0.93 3.29 16 4 N -0.53 -13.55 10.34 -187.84 -1.94 -15.49 16 5 C 0.30 8.09 6.90 138.75 0.96 9.04 16 6 C -0.05 -1.38 5.77 29.85 0.17 -1.21 16 7 C 0.16 5.32 4.88 86.38 0.42 5.74 16 8 N -0.72 -29.56 5.72 -344.63 -1.97 -31.54 16 9 C 0.37 18.91 7.66 133.37 1.02 19.93 16 10 C -0.18 -9.22 10.50 85.07 0.89 -8.32 16 11 N -0.42 -22.48 10.47 -192.22 -2.01 -24.50 16 12 C -0.13 -7.13 10.97 85.28 0.94 -6.19 16 13 C 0.21 12.28 6.54 40.15 0.26 12.55 16 14 C -0.44 -23.51 9.15 23.46 0.21 -23.29 16 15 H 0.10 5.03 7.86 -2.91 -0.02 5.00 16 16 C 0.02 1.07 5.49 85.30 0.47 1.54 16 17 N -0.74 -38.94 11.51 21.84 0.25 -38.69 16 18 Si 1.00 36.82 29.56 68.60 2.03 38.85 16 19 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 20 H -0.27 -9.51 7.11 99.48 0.71 -8.81 16 21 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 22 N -0.54 -30.79 8.10 -185.99 -1.51 -32.30 16 23 N -0.53 -13.53 10.34 -187.84 -1.94 -15.48 16 24 C 0.13 2.35 11.01 84.70 0.93 3.28 16 25 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.09 0.31 8.10 -2.38 -0.02 0.29 16 27 H 0.08 0.31 8.10 -2.38 -0.02 0.29 16 28 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 29 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.05 1.79 7.93 -2.39 -0.02 1.77 16 32 H 0.05 1.79 7.94 -2.39 -0.02 1.77 16 33 H 0.40 15.89 8.60 -92.71 -0.80 15.09 16 34 H 0.14 6.27 6.70 -2.91 -0.02 6.25 16 35 H 0.14 7.11 8.06 -2.91 -0.02 7.09 16 36 H 0.28 13.30 8.29 -92.71 -0.77 12.53 16 37 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -72.39 325.32 1.03 -71.36 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.31 Total: 34.00 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 7.81 Total: 13.78 kcal Atomic # 7 Polarization: -148.87 SS G_CDS: -9.12 Total: -157.99 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Total: -72.39 1.03 -71.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154867515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.471 kcal (2) G-P(sol) polarization free energy of solvation -72.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds