Wall clock time and date at job start Tue Mar 31 2020 05:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 114.00352 * 2 1 4 4 C 1.50699 * 109.47444 * 179.97438 * 3 2 1 5 5 C 1.38274 * 120.35222 * 0.26458 * 4 3 2 6 6 C 1.39752 * 118.48892 * 180.25951 * 5 4 3 7 7 N 1.38525 * 120.49492 * 179.75345 * 6 5 4 8 8 C 1.36935 * 120.00031 * 359.72377 * 7 6 5 9 9 H 1.08005 * 119.99877 * 359.97438 * 8 7 6 10 10 C 1.38856 * 120.00284 * 179.72667 * 8 7 6 11 11 N 1.31528 * 119.99572 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00060 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.46985 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46893 * 119.99597 * 12 10 8 15 15 H 1.48493 * 109.47057 * 239.99656 * 12 10 8 16 16 N 1.32925 * 119.01509 * 359.48066 * 6 5 4 17 17 C 1.32517 * 120.60991 * 0.25472 * 16 6 5 18 18 C 1.48313 * 119.17640 * 180.02562 * 17 16 6 19 19 C 1.39372 * 120.12602 * 179.72270 * 18 17 16 20 20 C 1.38014 * 119.87301 * 179.71487 * 19 18 17 21 21 C 1.38324 * 120.12253 * 0.55476 * 20 19 18 22 22 C 1.38318 * 120.25251 * 359.71909 * 21 20 19 23 23 C 1.38012 * 120.12940 * 0.02562 * 22 21 20 24 24 N 1.32377 * 120.35595 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.46574 * 300.00213 * 1 2 3 26 26 H 1.08994 * 109.46971 * 59.99676 * 1 2 3 27 27 H 1.08994 * 109.47312 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47269 * 60.00077 * 3 2 1 29 29 H 1.08996 * 109.47161 * 299.99853 * 3 2 1 30 30 H 1.08004 * 120.75821 * 359.97438 * 5 4 3 31 31 H 0.97005 * 120.00155 * 179.72163 * 7 6 5 32 32 H 0.97004 * 120.00095 * 180.02562 * 11 10 8 33 33 H 1.08008 * 120.06282 * 359.97438 * 19 18 17 34 34 H 1.07999 * 119.93569 * 180.25416 * 20 19 18 35 35 H 1.08002 * 119.86951 * 179.69602 * 21 20 19 36 36 H 1.08004 * 119.93717 * 180.02562 * 22 21 20 37 37 H 1.07995 * 120.06771 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.1149 -0.0583 -0.0044 6 6 5.5109 -0.1233 0.0020 7 7 6.1575 -1.3484 0.0024 8 6 5.4284 -2.5075 0.0023 9 1 4.3492 -2.4665 0.0023 10 6 6.0766 -3.7355 -0.0030 11 7 7.3909 -3.7853 -0.0084 12 14 5.0819 -5.3166 -0.0024 13 1 3.6333 -4.9901 0.0035 14 1 5.4059 -6.1056 -1.2180 15 1 5.4158 -6.1110 1.2069 16 7 6.2090 1.0078 0.0020 17 6 5.5929 2.1810 0.0013 18 6 6.4032 3.4232 0.0008 19 6 5.7757 4.6677 -0.0059 20 6 6.5348 5.8203 -0.0003 21 6 7.9158 5.7420 0.0003 22 6 8.5439 4.5097 0.0011 23 6 7.7950 3.3504 0.0009 24 7 4.2697 2.2722 0.0002 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.5201 -0.9598 -0.0084 31 1 7.1269 -1.3852 0.0027 32 1 7.8438 -4.6431 -0.0125 33 1 4.6974 4.7300 -0.0111 34 1 6.0496 6.7852 -0.0013 35 1 8.5058 6.6467 -0.0003 36 1 9.6225 4.4545 0.0020 37 1 8.2865 2.3888 0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155531240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:10 Heat of formation + Delta-G solvation = 30.567159 kcal Electronic energy + Delta-G solvation = -21194.462588 eV Core-core repulsion = 17936.859305 eV Total energy + Delta-G solvation = -3257.603282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.03 seconds Orbital eigenvalues (eV) -39.97730 -38.51547 -37.55312 -35.79683 -32.96831 -32.50002 -30.79846 -30.42792 -29.11998 -27.32895 -25.60153 -25.26692 -23.54887 -22.31608 -20.85953 -20.71624 -18.24287 -17.33183 -16.40451 -16.17504 -15.73288 -15.59767 -14.99036 -14.81249 -14.26563 -14.04308 -14.03741 -13.94272 -13.48532 -13.24237 -13.07799 -12.64178 -12.36898 -11.99956 -11.76530 -11.52954 -11.21025 -10.98909 -10.89052 -10.75725 -10.69496 -10.47206 -9.79629 -9.50764 -9.24648 -9.11763 -8.64802 -8.16401 -8.14501 -7.32847 -6.75135 -3.98899 1.18150 1.71297 2.28800 2.53136 3.09754 3.10024 3.15450 3.75315 3.88596 4.07809 4.51269 4.71971 4.94574 5.08980 5.16677 5.18709 5.26416 5.39009 5.39340 5.41195 5.53907 5.72200 5.76012 5.80733 5.81877 6.10803 6.16460 6.31684 6.38332 6.51307 6.66389 6.75209 6.81485 7.00601 7.17980 7.24840 7.32316 7.43780 7.68183 8.10845 8.59416 9.04520 9.16510 9.55523 10.40433 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.005045 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.573725 B = 5549.099250 C = 7642.220237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.381 6.381 3 C 0.124 3.876 4 C 0.175 3.825 5 C -0.274 4.274 6 C 0.374 3.626 7 N -0.509 5.509 8 C -0.304 4.304 9 H 0.110 0.890 10 C 0.028 3.972 11 N -0.877 5.877 12 Si 0.938 3.062 13 H -0.263 1.263 14 H -0.277 1.277 15 H -0.277 1.277 16 N -0.595 5.595 17 C 0.388 3.612 18 C -0.020 4.020 19 C -0.078 4.078 20 C -0.136 4.136 21 C -0.117 4.117 22 C -0.134 4.134 23 C -0.077 4.077 24 N -0.600 5.600 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.140 0.860 31 H 0.406 0.594 32 H 0.279 0.721 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.803 11.232 0.008 12.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.299 6.299 3 C 0.047 3.953 4 C 0.038 3.962 5 C -0.306 4.306 6 C 0.125 3.875 7 N -0.116 5.116 8 C -0.435 4.435 9 H 0.128 0.872 10 C -0.178 4.178 11 N -0.513 5.513 12 Si 0.764 3.236 13 H -0.187 1.187 14 H -0.203 1.203 15 H -0.203 1.203 16 N -0.324 5.324 17 C 0.119 3.881 18 C -0.022 4.022 19 C -0.098 4.098 20 C -0.154 4.154 21 C -0.136 4.136 22 C -0.152 4.152 23 C -0.096 4.096 24 N -0.328 5.328 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.158 0.842 31 H 0.242 0.758 32 H 0.089 0.911 33 H 0.152 0.848 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.122 11.260 0.006 12.370 hybrid contribution -0.600 -1.497 -0.003 1.612 sum -5.721 9.763 0.003 11.316 Atomic orbital electron populations 1.22716 0.81155 1.02716 0.99706 1.87930 1.19273 1.27307 1.95411 1.20807 0.89162 0.84418 1.00929 1.20357 0.93883 0.88951 0.93027 1.21590 0.94151 0.99390 1.15422 1.18282 0.88736 0.85834 0.94690 1.40797 1.09159 1.00879 1.60763 1.19924 0.93013 0.82239 1.48304 0.87218 1.25423 0.96008 1.00030 0.96335 1.69694 1.07446 1.27818 1.46337 0.85662 0.79723 0.80099 0.78163 1.18723 1.20282 1.20272 1.67603 1.40677 0.97363 1.26792 1.20357 0.86467 0.89700 0.91616 1.18209 0.92152 0.90175 1.01629 1.21307 1.00818 0.90921 0.96749 1.21039 0.93926 0.98063 1.02420 1.21176 0.94788 0.97484 1.00133 1.21070 0.99739 0.92357 1.02060 1.21395 0.92949 0.99182 0.96118 1.67639 1.05615 1.32011 1.27569 0.94204 0.94211 0.89594 0.91621 0.91616 0.84188 0.75835 0.91101 0.84762 0.86208 0.86515 0.86114 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.28 9.25 -35.23 -0.33 -6.61 16 3 C 0.12 2.02 6.50 36.01 0.23 2.25 16 4 C 0.18 3.63 6.82 -82.34 -0.56 3.07 16 5 C -0.27 -6.31 8.70 -39.00 -0.34 -6.65 16 6 C 0.37 9.20 7.67 -154.80 -1.19 8.01 16 7 N -0.51 -13.04 5.43 -10.99 -0.06 -13.10 16 8 C -0.30 -7.79 9.56 -15.04 -0.14 -7.93 16 9 H 0.11 2.73 5.73 -52.48 -0.30 2.43 16 10 C 0.03 0.71 5.50 -17.45 -0.10 0.61 16 11 N -0.88 -22.97 13.05 55.49 0.72 -22.25 16 12 Si 0.94 19.36 29.55 -169.99 -5.02 14.34 16 13 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 14 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 16 N -0.59 -14.01 9.48 -10.36 -0.10 -14.10 16 17 C 0.39 8.40 7.56 -156.98 -1.19 7.21 16 18 C -0.02 -0.36 5.88 -104.91 -0.62 -0.98 16 19 C -0.08 -1.22 9.56 -39.24 -0.38 -1.60 16 20 C -0.14 -1.75 10.03 -39.63 -0.40 -2.15 16 21 C -0.12 -1.43 10.04 -39.52 -0.40 -1.83 16 22 C -0.13 -1.82 10.03 -39.63 -0.40 -2.22 16 23 C -0.08 -1.28 9.56 -39.24 -0.38 -1.66 16 24 N -0.60 -12.56 9.38 -7.47 -0.07 -12.63 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.14 3.25 5.10 -52.48 -0.27 2.98 16 31 H 0.41 10.64 8.02 -40.82 -0.33 10.31 16 32 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.13 2.05 7.51 -52.48 -0.39 1.65 16 34 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 37 H 0.14 2.39 7.51 -52.49 -0.39 2.00 16 LS Contribution 322.95 15.07 4.87 4.87 Total: -1.00 -28.73 322.95 -8.91 -37.65 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -4.20 Total: 14.20 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -4.73 Total: -2.35 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.50 Total: -62.09 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.33 Total: -6.61 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.73 -8.91 -37.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.213 kcal (2) G-P(sol) polarization free energy of solvation -28.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.03 seconds