Wall clock time and date at job start Tue Mar 31 2020 05:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 114.00352 * 2 1 4 4 C 1.50699 * 109.47444 * 179.97438 * 3 2 1 5 5 C 1.38274 * 120.35222 * 0.26458 * 4 3 2 6 6 C 1.39752 * 118.48892 * 180.25951 * 5 4 3 7 7 N 1.38525 * 120.49492 * 179.75345 * 6 5 4 8 8 C 1.36935 * 120.00031 * 359.72377 * 7 6 5 9 9 H 1.08005 * 119.99877 * 359.97438 * 8 7 6 10 10 C 1.38856 * 120.00284 * 179.72667 * 8 7 6 11 11 N 1.31528 * 119.99572 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00060 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.46985 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46893 * 119.99597 * 12 10 8 15 15 H 1.48493 * 109.47057 * 239.99656 * 12 10 8 16 16 N 1.32925 * 119.01509 * 359.48066 * 6 5 4 17 17 C 1.32517 * 120.60991 * 0.25472 * 16 6 5 18 18 C 1.48313 * 119.17640 * 180.02562 * 17 16 6 19 19 C 1.39372 * 120.12602 * 179.72270 * 18 17 16 20 20 C 1.38014 * 119.87301 * 179.71487 * 19 18 17 21 21 C 1.38324 * 120.12253 * 0.55476 * 20 19 18 22 22 C 1.38318 * 120.25251 * 359.71909 * 21 20 19 23 23 C 1.38012 * 120.12940 * 0.02562 * 22 21 20 24 24 N 1.32377 * 120.35595 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.46574 * 300.00213 * 1 2 3 26 26 H 1.08994 * 109.46971 * 59.99676 * 1 2 3 27 27 H 1.08994 * 109.47312 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47269 * 60.00077 * 3 2 1 29 29 H 1.08996 * 109.47161 * 299.99853 * 3 2 1 30 30 H 1.08004 * 120.75821 * 359.97438 * 5 4 3 31 31 H 0.97005 * 120.00155 * 179.72163 * 7 6 5 32 32 H 0.97004 * 120.00095 * 180.02562 * 11 10 8 33 33 H 1.08008 * 120.06282 * 359.97438 * 19 18 17 34 34 H 1.07999 * 119.93569 * 180.25416 * 20 19 18 35 35 H 1.08002 * 119.86951 * 179.69602 * 21 20 19 36 36 H 1.08004 * 119.93717 * 180.02562 * 22 21 20 37 37 H 1.07995 * 120.06771 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.1149 -0.0583 -0.0044 6 6 5.5109 -0.1233 0.0020 7 7 6.1575 -1.3484 0.0024 8 6 5.4284 -2.5075 0.0023 9 1 4.3492 -2.4665 0.0023 10 6 6.0766 -3.7355 -0.0030 11 7 7.3909 -3.7853 -0.0084 12 14 5.0819 -5.3166 -0.0024 13 1 3.6333 -4.9901 0.0035 14 1 5.4059 -6.1056 -1.2180 15 1 5.4158 -6.1110 1.2069 16 7 6.2090 1.0078 0.0020 17 6 5.5929 2.1810 0.0013 18 6 6.4032 3.4232 0.0008 19 6 5.7757 4.6677 -0.0059 20 6 6.5348 5.8203 -0.0003 21 6 7.9158 5.7420 0.0003 22 6 8.5439 4.5097 0.0011 23 6 7.7950 3.3504 0.0009 24 7 4.2697 2.2722 0.0002 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.5201 -0.9598 -0.0084 31 1 7.1269 -1.3852 0.0027 32 1 7.8438 -4.6431 -0.0125 33 1 4.6974 4.7300 -0.0111 34 1 6.0496 6.7852 -0.0013 35 1 8.5058 6.6467 -0.0003 36 1 9.6225 4.4545 0.0020 37 1 8.2865 2.3888 0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155531240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:09 Heat of formation + Delta-G solvation = 14.059050 kcal Electronic energy + Delta-G solvation = -21195.178433 eV Core-core repulsion = 17936.859305 eV Total energy + Delta-G solvation = -3258.319128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.65455 -39.73274 -38.79469 -37.59015 -34.67450 -34.14496 -32.27905 -31.69289 -30.57534 -28.68815 -27.18078 -26.72327 -25.00051 -23.59973 -22.43141 -22.09896 -20.07393 -18.84009 -17.98295 -17.53769 -16.91585 -16.84692 -16.55914 -16.21278 -15.84084 -15.67610 -15.51574 -15.35265 -15.13818 -14.52326 -14.19453 -13.80737 -13.73856 -13.56557 -13.27184 -13.10312 -12.62755 -12.51710 -12.24371 -12.13835 -12.07350 -11.88010 -11.28097 -11.22213 -10.92232 -10.46979 -9.91051 -9.77921 -9.69941 -9.06438 -8.62662 -5.95914 -0.22151 0.57295 0.58181 0.98408 1.39852 1.47086 1.55558 2.16912 2.51215 2.73059 2.81509 3.01593 3.39778 3.42419 3.66616 4.11765 4.20393 4.23157 4.32641 4.35019 4.44535 4.55265 4.62069 4.64207 4.69004 4.76570 4.79702 4.90182 4.96740 5.11129 5.24349 5.26204 5.49084 5.62241 5.64418 5.78236 5.89847 6.12788 6.21066 6.34897 6.69555 7.19644 7.28152 7.71405 8.55233 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.005045 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.573725 B = 5549.099250 C = 7642.220237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.130 3.870 4 C 0.180 3.820 5 C -0.301 4.301 6 C 0.365 3.635 7 N -0.532 5.532 8 C -0.326 4.326 9 H 0.110 0.890 10 C -0.017 4.017 11 N -0.916 5.916 12 Si 1.007 2.993 13 H -0.256 1.256 14 H -0.273 1.273 15 H -0.272 1.272 16 N -0.616 5.616 17 C 0.379 3.621 18 C -0.059 4.059 19 C -0.082 4.082 20 C -0.127 4.127 21 C -0.100 4.100 22 C -0.132 4.132 23 C -0.095 4.095 24 N -0.591 5.591 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.134 0.866 31 H 0.395 0.605 32 H 0.282 0.718 33 H 0.135 0.865 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.147 0.853 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.118 14.055 0.009 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C 0.053 3.947 4 C 0.041 3.959 5 C -0.332 4.332 6 C 0.117 3.883 7 N -0.140 5.140 8 C -0.456 4.456 9 H 0.127 0.873 10 C -0.218 4.218 11 N -0.554 5.554 12 Si 0.829 3.171 13 H -0.179 1.179 14 H -0.198 1.198 15 H -0.198 1.198 16 N -0.346 5.346 17 C 0.111 3.889 18 C -0.061 4.061 19 C -0.102 4.102 20 C -0.145 4.145 21 C -0.118 4.118 22 C -0.150 4.150 23 C -0.115 4.115 24 N -0.318 5.318 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.152 0.848 31 H 0.229 0.771 32 H 0.091 0.909 33 H 0.153 0.847 34 H 0.176 0.824 35 H 0.178 0.822 36 H 0.165 0.835 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.465 14.130 0.007 15.539 hybrid contribution -0.201 -2.009 -0.003 2.019 sum -6.666 12.121 0.004 13.833 Atomic orbital electron populations 1.22977 0.78486 1.03996 1.01438 1.87894 1.22170 1.27419 1.95730 1.20868 0.85826 0.85047 1.02947 1.21176 0.96529 0.87922 0.90250 1.21636 0.93426 1.00390 1.17732 1.18711 0.89709 0.86032 0.93850 1.40812 1.08532 1.01387 1.63221 1.20147 0.93135 0.82828 1.49480 0.87270 1.26365 0.96986 1.02851 0.95620 1.69795 1.08948 1.28639 1.47984 0.84650 0.78455 0.75780 0.78213 1.17921 1.19779 1.19759 1.67692 1.41248 0.97817 1.27819 1.21231 0.87305 0.90410 0.89933 1.18330 0.92620 0.89810 1.05365 1.21417 1.01168 0.90789 0.96819 1.21470 0.94263 0.98472 1.00295 1.21691 0.94958 0.98268 0.96885 1.21385 1.00979 0.91787 1.00869 1.21365 0.92748 0.99730 0.97675 1.67835 1.05379 1.31728 1.26850 0.92420 0.92428 0.88681 0.89344 0.89336 0.84838 0.77067 0.90871 0.84747 0.82400 0.82246 0.83539 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 113.37 1.25 1.80 16 2 O -0.41 -13.17 9.25 -148.98 -1.38 -14.54 16 3 C 0.13 4.01 6.50 71.24 0.46 4.48 16 4 C 0.18 7.50 6.82 42.48 0.29 7.79 16 5 C -0.30 -14.42 8.70 22.64 0.20 -14.22 16 6 C 0.37 19.03 7.67 133.22 1.02 20.06 16 7 N -0.53 -29.13 5.43 -188.68 -1.02 -30.16 16 8 C -0.33 -17.62 9.56 84.04 0.80 -16.81 16 9 H 0.11 5.73 5.73 -2.91 -0.02 5.72 16 10 C -0.02 -0.86 5.50 84.89 0.47 -0.39 16 11 N -0.92 -50.22 13.05 21.65 0.28 -49.94 16 12 Si 1.01 40.67 29.55 68.60 2.03 42.69 16 13 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 14 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 15 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 16 N -0.62 -30.67 9.48 -186.68 -1.77 -32.44 16 17 C 0.38 16.91 7.56 137.55 1.04 17.95 16 18 C -0.06 -2.18 5.88 -20.05 -0.12 -2.30 16 19 C -0.08 -2.41 9.56 22.49 0.22 -2.20 16 20 C -0.13 -2.73 10.03 22.24 0.22 -2.51 16 21 C -0.10 -1.98 10.04 22.31 0.22 -1.76 16 22 C -0.13 -3.27 10.03 22.24 0.22 -3.05 16 23 C -0.10 -3.22 9.56 22.49 0.22 -3.00 16 24 N -0.59 -24.81 9.38 -177.55 -1.67 -26.48 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 29 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.13 6.50 5.10 -2.91 -0.01 6.48 16 31 H 0.40 22.45 8.02 -92.70 -0.74 21.71 16 32 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 33 H 0.13 3.86 7.51 -2.91 -0.02 3.84 16 34 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 35 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 37 H 0.11 4.23 7.51 -2.91 -0.02 4.21 16 Total: -1.00 -66.82 322.95 3.35 -63.48 By element: Atomic # 1 Polarization: 41.21 SS G_CDS: 0.36 Total: 41.57 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 6.51 Total: 5.83 kcal Atomic # 7 Polarization: -134.84 SS G_CDS: -4.18 Total: -139.02 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -1.38 Total: -14.54 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Total: -66.82 3.35 -63.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.534 kcal (2) G-P(sol) polarization free energy of solvation -66.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds