Wall clock time and date at job start Tue Mar 31 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30382 * 119.31167 * 2 1 4 4 C 1.33782 * 122.06401 * 180.30900 * 3 2 1 5 5 C 1.35645 * 120.48317 * 359.70871 * 4 3 2 6 6 C 1.50703 * 120.68235 * 180.02562 * 5 4 3 7 7 N 1.46891 * 109.47148 * 259.97499 * 6 5 4 8 8 C 1.41965 * 118.62873 * 359.97438 * 5 4 3 9 9 N 1.31445 * 120.92855 * 180.02562 * 8 5 4 10 10 N 1.35952 * 119.31463 * 179.72441 * 2 1 3 11 11 C 1.39649 * 120.34686 * 359.97438 * 10 2 1 12 12 C 1.38556 * 119.57876 * 128.97835 * 11 10 2 13 13 C 1.40841 * 118.79832 * 180.27462 * 12 11 10 14 14 C 1.41526 * 120.99939 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00330 * 330.04199 * 14 13 12 16 16 C 1.40040 * 119.99918 * 150.03678 * 14 13 12 17 17 N 1.30731 * 120.00097 * 348.13335 * 16 14 13 18 18 Si 1.86800 * 119.99930 * 168.13082 * 16 14 13 19 19 H 1.48498 * 109.47309 * 90.00055 * 18 16 14 20 20 H 1.48500 * 109.47298 * 210.00257 * 18 16 14 21 21 H 1.48510 * 109.47038 * 330.00322 * 18 16 14 22 22 C 1.41160 * 117.99847 * 0.02562 * 13 12 11 23 23 C 1.37622 * 119.01198 * 359.97438 * 22 13 12 24 24 N 1.32052 * 121.10442 * 0.02562 * 23 22 13 25 25 H 1.09001 * 109.47431 * 264.65568 * 1 2 3 26 26 H 1.08999 * 109.47284 * 24.65782 * 1 2 3 27 27 H 1.08998 * 109.47226 * 144.65967 * 1 2 3 28 28 H 1.07998 * 119.75439 * 179.72566 * 4 3 2 29 29 H 1.08999 * 109.46977 * 19.97568 * 6 5 4 30 30 H 1.09006 * 109.47075 * 139.97452 * 6 5 4 31 31 H 1.00900 * 111.00211 * 180.02562 * 7 6 5 32 32 H 1.00905 * 110.99980 * 303.95950 * 7 6 5 33 33 H 0.97002 * 120.00288 * 359.97281 * 9 8 5 34 34 H 1.08002 * 120.59933 * 0.29722 * 12 11 10 35 35 H 0.96999 * 120.00299 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.49044 * 179.97438 * 22 13 12 37 37 H 1.07997 * 119.44615 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1453 1.1369 0.0000 4 6 3.4815 1.2011 -0.0061 5 6 4.2250 0.0666 -0.0067 6 6 5.7305 0.1337 -0.0130 7 7 6.2248 -0.0883 -1.3783 8 6 3.5556 -1.1853 -0.0001 9 7 4.2313 -2.3128 0.0002 10 7 2.1726 -1.1854 0.0057 11 6 1.4672 -2.3906 0.0120 12 6 1.7756 -3.3685 -0.9199 13 6 1.0499 -4.5754 -0.9024 14 6 1.3256 -5.6053 -1.8331 15 1 1.7008 -5.3592 -2.8155 16 6 1.1121 -6.9436 -1.4802 17 7 0.8838 -7.2623 -0.2330 18 14 1.1533 -8.2733 -2.7915 19 1 2.5387 -8.7898 -2.9294 20 1 0.2480 -9.3833 -2.3996 21 1 0.7059 -7.7039 -4.0881 22 6 0.0385 -4.7264 0.0707 23 6 -0.1955 -3.6985 0.9553 24 7 0.5079 -2.5820 0.9052 25 1 -0.3634 -0.0957 1.0232 26 1 -0.3634 0.9339 -0.4287 27 1 -0.3633 -0.8383 -0.5944 28 1 3.9718 2.1634 -0.0104 29 1 6.0518 1.1156 0.3346 30 1 6.1313 -0.6348 0.6481 31 1 7.2326 -0.0485 -1.4089 32 1 5.8864 -0.9643 -1.7474 33 1 5.2012 -2.2970 -0.0046 34 1 2.5585 -3.2082 -1.6464 35 1 0.7355 -8.1892 0.0114 36 1 -0.5430 -5.6352 0.1202 37 1 -0.9679 -3.8064 1.7024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156830622.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:20 Heat of formation + Delta-G solvation = 101.374641 kcal Electronic energy + Delta-G solvation = -22076.063581 eV Core-core repulsion = 18853.823493 eV Total energy + Delta-G solvation = -3222.240089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.10066 -38.41868 -36.12215 -35.21190 -34.04943 -32.79603 -30.87019 -30.53842 -28.82631 -28.43156 -26.07218 -24.35470 -23.76494 -22.07995 -21.43570 -20.73138 -18.18439 -17.77153 -16.44353 -16.33938 -15.73344 -15.62570 -15.12437 -14.83307 -14.34716 -14.18518 -14.02112 -13.55035 -13.22706 -12.79408 -12.67708 -12.55922 -12.40961 -12.08524 -11.77792 -11.47066 -11.30924 -11.18833 -11.01181 -10.49118 -10.18202 -10.01680 -9.78570 -9.49744 -8.87290 -8.78951 -8.29077 -8.10846 -7.85644 -7.09288 -6.92226 -4.69805 0.97743 2.30250 2.51462 2.63974 2.79870 2.98845 3.02788 3.09508 3.80756 3.87166 4.31540 4.48745 4.67071 4.76785 4.96836 5.07822 5.21036 5.41524 5.50685 5.71083 5.73666 5.81550 5.88403 6.15460 6.20950 6.41414 6.51371 6.62290 6.76595 6.90832 6.95348 6.99264 7.02208 7.21804 7.32245 7.48640 7.75718 7.97650 8.22515 8.31431 8.57305 8.64276 8.69986 9.24438 10.02384 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019401 B = 0.005128 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.887594 B = 5458.618155 C = 6465.795520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.432 3.568 3 N -0.574 5.574 4 C 0.163 3.837 5 C -0.267 4.267 6 C 0.127 3.873 7 N -0.846 5.846 8 C 0.426 3.574 9 N -0.751 5.751 10 N -0.431 5.431 11 C 0.308 3.692 12 C -0.200 4.200 13 C 0.135 3.865 14 C -0.451 4.451 15 H 0.082 0.918 16 C 0.077 3.923 17 N -0.789 5.789 18 Si 0.915 3.085 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.201 4.201 23 C 0.100 3.900 24 N -0.576 5.576 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.154 0.846 29 H 0.084 0.916 30 H 0.031 0.969 31 H 0.340 0.660 32 H 0.343 0.657 33 H 0.337 0.663 34 H 0.108 0.892 35 H 0.284 0.716 36 H 0.128 0.872 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 8.992 -0.405 9.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.169 3.831 3 N -0.298 5.298 4 C 0.022 3.978 5 C -0.278 4.278 6 C -0.005 4.005 7 N -0.377 5.377 8 C 0.153 3.847 9 N -0.382 5.382 10 N -0.129 5.129 11 C 0.087 3.913 12 C -0.226 4.226 13 C 0.126 3.874 14 C -0.482 4.482 15 H 0.100 0.900 16 C -0.142 4.142 17 N -0.414 5.414 18 Si 0.739 3.261 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.223 4.223 23 C -0.052 4.052 24 N -0.294 5.294 25 H 0.121 0.879 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.171 0.829 29 H 0.102 0.898 30 H 0.049 0.951 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.127 0.873 35 H 0.095 0.905 36 H 0.145 0.855 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.270 9.767 0.207 9.851 hybrid contribution 2.205 -2.272 -0.518 3.208 sum 3.475 7.495 -0.311 8.267 Atomic orbital electron populations 1.20878 0.84958 1.04016 1.05422 1.23498 0.96418 0.79664 0.83480 1.68173 1.09988 1.23308 1.28339 1.22082 0.88704 0.97955 0.89010 1.21012 0.96782 0.93039 1.17009 1.20244 0.89494 1.01181 0.89553 1.58802 1.14721 1.42360 1.21800 1.18531 0.83228 0.90578 0.92378 1.69871 1.13137 1.25633 1.29557 1.42421 1.04249 1.06127 1.60069 1.17616 0.93961 0.84918 0.94797 1.21509 1.02941 0.96119 1.02025 1.17709 0.88053 0.90507 0.91136 1.19546 1.38298 0.90068 1.00295 0.89982 1.25930 0.92065 1.00191 0.96013 1.69728 1.33492 1.20741 1.17454 0.86199 0.79152 0.79471 0.81315 1.19328 1.19917 1.18311 1.22203 1.00365 0.99835 0.99935 1.21739 0.97172 0.88578 0.97732 1.66709 1.11440 1.26497 1.24735 0.87854 0.89187 0.89425 0.82892 0.89803 0.95130 0.84741 0.84401 0.84649 0.87346 0.90483 0.85462 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.40 8.72 36.00 0.31 -1.09 16 2 C 0.43 7.70 7.56 -154.68 -1.17 6.53 16 3 N -0.57 -9.55 10.25 -10.49 -0.11 -9.65 16 4 C 0.16 2.47 10.80 -17.63 -0.19 2.28 16 5 C -0.27 -4.29 5.44 -104.12 -0.57 -4.86 16 6 C 0.13 1.60 6.29 -4.98 -0.03 1.57 16 7 N -0.85 -10.16 9.61 -11.41 -0.11 -10.27 16 8 C 0.43 8.40 7.30 -155.42 -1.14 7.27 16 9 N -0.75 -15.57 12.09 31.43 0.38 -15.19 16 10 N -0.43 -8.82 2.86 -58.77 -0.17 -8.99 16 11 C 0.31 7.04 5.32 -154.54 -0.82 6.21 16 12 C -0.20 -4.92 8.53 -38.48 -0.33 -5.25 16 13 C 0.13 3.44 5.54 -106.55 -0.59 2.85 16 14 C -0.45 -11.45 9.11 -37.65 -0.34 -11.79 16 15 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 16 C 0.08 1.85 5.25 -17.34 -0.09 1.76 16 17 N -0.79 -19.46 11.06 55.55 0.61 -18.84 16 18 Si 0.91 17.86 29.58 -169.99 -5.03 12.83 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 20 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 21 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 22 C -0.20 -4.84 8.74 -38.70 -0.34 -5.18 16 23 C 0.10 2.20 11.15 -17.68 -0.20 2.01 16 24 N -0.58 -12.84 8.57 -12.49 -0.11 -12.95 16 25 H 0.10 1.50 8.05 -51.93 -0.42 1.08 16 26 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.09 1.42 6.93 -51.93 -0.36 1.06 16 28 H 0.15 1.82 8.03 -52.49 -0.42 1.39 16 29 H 0.08 0.88 8.01 -51.93 -0.42 0.47 16 30 H 0.03 0.39 7.23 -51.93 -0.38 0.02 16 31 H 0.34 3.15 9.08 -39.29 -0.36 2.79 16 32 H 0.34 4.58 8.62 -39.29 -0.34 4.24 16 33 H 0.34 6.08 6.76 -40.82 -0.28 5.80 16 34 H 0.11 2.71 7.52 -52.49 -0.39 2.32 16 35 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 36 H 0.13 3.11 6.48 -52.49 -0.34 2.77 16 37 H 0.13 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 314.17 15.07 4.73 4.73 Total: -1.00 -28.66 314.17 -9.37 -38.03 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -4.09 Total: 17.99 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -5.49 Total: 2.31 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: 0.50 Total: -75.90 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.66 -9.37 -38.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156830622.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.400 kcal (2) G-P(sol) polarization free energy of solvation -28.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds