Wall clock time and date at job start Tue Mar 31 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30382 * 119.31167 * 2 1 4 4 C 1.33782 * 122.06401 * 180.30900 * 3 2 1 5 5 C 1.35645 * 120.48317 * 359.70871 * 4 3 2 6 6 C 1.50703 * 120.68235 * 180.02562 * 5 4 3 7 7 N 1.46891 * 109.47148 * 259.97499 * 6 5 4 8 8 C 1.41965 * 118.62873 * 359.97438 * 5 4 3 9 9 N 1.31445 * 120.92855 * 180.02562 * 8 5 4 10 10 N 1.35952 * 119.31463 * 179.72441 * 2 1 3 11 11 C 1.39649 * 120.34686 * 359.97438 * 10 2 1 12 12 C 1.38556 * 119.57876 * 128.97835 * 11 10 2 13 13 C 1.40841 * 118.79832 * 180.27462 * 12 11 10 14 14 C 1.41526 * 120.99939 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00330 * 330.04199 * 14 13 12 16 16 C 1.40040 * 119.99918 * 150.03678 * 14 13 12 17 17 N 1.30731 * 120.00097 * 348.13335 * 16 14 13 18 18 Si 1.86800 * 119.99930 * 168.13082 * 16 14 13 19 19 H 1.48498 * 109.47309 * 90.00055 * 18 16 14 20 20 H 1.48500 * 109.47298 * 210.00257 * 18 16 14 21 21 H 1.48510 * 109.47038 * 330.00322 * 18 16 14 22 22 C 1.41160 * 117.99847 * 0.02562 * 13 12 11 23 23 C 1.37622 * 119.01198 * 359.97438 * 22 13 12 24 24 N 1.32052 * 121.10442 * 0.02562 * 23 22 13 25 25 H 1.09001 * 109.47431 * 264.65568 * 1 2 3 26 26 H 1.08999 * 109.47284 * 24.65782 * 1 2 3 27 27 H 1.08998 * 109.47226 * 144.65967 * 1 2 3 28 28 H 1.07998 * 119.75439 * 179.72566 * 4 3 2 29 29 H 1.08999 * 109.46977 * 19.97568 * 6 5 4 30 30 H 1.09006 * 109.47075 * 139.97452 * 6 5 4 31 31 H 1.00900 * 111.00211 * 180.02562 * 7 6 5 32 32 H 1.00905 * 110.99980 * 303.95950 * 7 6 5 33 33 H 0.97002 * 120.00288 * 359.97281 * 9 8 5 34 34 H 1.08002 * 120.59933 * 0.29722 * 12 11 10 35 35 H 0.96999 * 120.00299 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.49044 * 179.97438 * 22 13 12 37 37 H 1.07997 * 119.44615 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1453 1.1369 0.0000 4 6 3.4815 1.2011 -0.0061 5 6 4.2250 0.0666 -0.0067 6 6 5.7305 0.1337 -0.0130 7 7 6.2248 -0.0883 -1.3783 8 6 3.5556 -1.1853 -0.0001 9 7 4.2313 -2.3128 0.0002 10 7 2.1726 -1.1854 0.0057 11 6 1.4672 -2.3906 0.0120 12 6 1.7756 -3.3685 -0.9199 13 6 1.0499 -4.5754 -0.9024 14 6 1.3256 -5.6053 -1.8331 15 1 1.7008 -5.3592 -2.8155 16 6 1.1121 -6.9436 -1.4802 17 7 0.8838 -7.2623 -0.2330 18 14 1.1533 -8.2733 -2.7915 19 1 2.5387 -8.7898 -2.9294 20 1 0.2480 -9.3833 -2.3996 21 1 0.7059 -7.7039 -4.0881 22 6 0.0385 -4.7264 0.0707 23 6 -0.1955 -3.6985 0.9553 24 7 0.5079 -2.5820 0.9052 25 1 -0.3634 -0.0957 1.0232 26 1 -0.3634 0.9339 -0.4287 27 1 -0.3633 -0.8383 -0.5944 28 1 3.9718 2.1634 -0.0104 29 1 6.0518 1.1156 0.3346 30 1 6.1313 -0.6348 0.6481 31 1 7.2326 -0.0485 -1.4089 32 1 5.8864 -0.9643 -1.7474 33 1 5.2012 -2.2970 -0.0046 34 1 2.5585 -3.2082 -1.6464 35 1 0.7355 -8.1892 0.0114 36 1 -0.5430 -5.6352 0.1202 37 1 -0.9679 -3.8064 1.7024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156830622.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:19 Heat of formation + Delta-G solvation = 83.404414 kcal Electronic energy + Delta-G solvation = -22076.842829 eV Core-core repulsion = 18853.823493 eV Total energy + Delta-G solvation = -3223.019336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.55112 -40.12871 -37.37851 -36.72836 -35.77679 -34.03779 -32.70594 -31.94923 -30.54539 -29.63582 -27.93343 -25.55648 -25.22479 -23.71598 -23.08072 -22.26052 -19.85701 -19.11277 -18.07840 -17.78456 -17.21155 -17.08065 -16.65398 -16.25766 -15.97171 -15.62650 -15.29298 -15.01754 -14.59864 -14.41259 -14.26500 -13.84494 -13.73028 -13.37639 -13.10413 -13.02599 -12.95668 -12.82038 -12.51101 -12.16909 -11.92453 -11.50771 -11.23952 -11.14424 -10.38452 -10.10455 -9.96355 -9.75979 -9.54459 -8.72935 -8.59089 -6.62011 -0.36759 0.70483 0.84717 0.90885 1.30334 1.38408 1.48259 1.52846 2.17510 2.50370 2.69312 3.06677 3.39723 3.55022 3.65707 3.77617 3.87521 4.09196 4.13975 4.36488 4.53041 4.67220 4.68117 4.71753 4.77533 4.88539 4.89511 5.04485 5.15796 5.19397 5.25479 5.36554 5.45973 5.81447 5.90644 5.97501 6.20266 6.43393 6.45665 6.68533 6.76443 6.87189 7.26908 7.43503 8.24299 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019401 B = 0.005128 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.887594 B = 5458.618155 C = 6465.795520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.415 3.585 3 N -0.565 5.565 4 C 0.161 3.839 5 C -0.269 4.269 6 C 0.131 3.869 7 N -0.847 5.847 8 C 0.413 3.587 9 N -0.790 5.790 10 N -0.446 5.446 11 C 0.319 3.681 12 C -0.221 4.221 13 C 0.111 3.889 14 C -0.485 4.485 15 H 0.077 0.923 16 C 0.041 3.959 17 N -0.817 5.817 18 Si 0.987 3.013 19 H -0.267 1.267 20 H -0.260 1.260 21 H -0.257 1.257 22 C -0.217 4.217 23 C 0.106 3.894 24 N -0.570 5.570 25 H 0.108 0.892 26 H 0.120 0.880 27 H 0.070 0.930 28 H 0.195 0.805 29 H 0.114 0.886 30 H 0.027 0.973 31 H 0.356 0.644 32 H 0.333 0.667 33 H 0.346 0.654 34 H 0.092 0.908 35 H 0.293 0.707 36 H 0.121 0.879 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 10.351 -0.251 10.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.153 3.847 3 N -0.287 5.287 4 C 0.022 3.978 5 C -0.280 4.280 6 C -0.001 4.001 7 N -0.378 5.378 8 C 0.141 3.859 9 N -0.423 5.423 10 N -0.145 5.145 11 C 0.096 3.904 12 C -0.247 4.247 13 C 0.102 3.898 14 C -0.516 4.516 15 H 0.095 0.905 16 C -0.176 4.176 17 N -0.443 5.443 18 Si 0.807 3.193 19 H -0.191 1.191 20 H -0.184 1.184 21 H -0.180 1.180 22 C -0.240 4.240 23 C -0.047 4.047 24 N -0.288 5.288 25 H 0.127 0.873 26 H 0.138 0.862 27 H 0.089 0.911 28 H 0.211 0.789 29 H 0.132 0.868 30 H 0.045 0.955 31 H 0.171 0.829 32 H 0.145 0.855 33 H 0.163 0.837 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.138 0.862 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.454 11.180 0.371 11.281 hybrid contribution 2.196 -2.546 -0.513 3.401 sum 3.650 8.634 -0.143 9.375 Atomic orbital electron populations 1.20930 0.83242 1.04874 1.05616 1.24109 0.97624 0.79135 0.83813 1.68270 1.10895 1.22271 1.27312 1.22704 0.88149 0.99371 0.87620 1.21303 0.98570 0.91550 1.16540 1.20318 0.87232 1.02712 0.89810 1.58800 1.16063 1.41666 1.21317 1.19052 0.83122 0.91964 0.91779 1.69823 1.14046 1.27016 1.31441 1.42589 1.04686 1.06015 1.61167 1.17694 0.93460 0.85511 0.93700 1.21423 1.03268 0.97055 1.02910 1.18052 0.88713 0.91102 0.91923 1.19785 1.40068 0.91387 1.00400 0.90532 1.26753 0.91000 1.01735 0.98120 1.69763 1.33633 1.21848 1.19046 0.85125 0.79270 0.76549 0.78333 1.19144 1.18414 1.18045 1.22192 1.00601 1.00400 1.00769 1.22257 0.97248 0.87698 0.97475 1.66901 1.11279 1.26396 1.24214 0.87335 0.86153 0.91147 0.78869 0.86790 0.95518 0.82909 0.85523 0.83674 0.88976 0.89574 0.86152 0.81674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.52 8.72 71.23 0.62 -1.90 16 2 C 0.41 14.32 7.56 137.87 1.04 15.36 16 3 N -0.56 -17.45 10.25 -187.09 -1.92 -19.37 16 4 C 0.16 4.44 10.80 83.80 0.90 5.34 16 5 C -0.27 -8.20 5.44 -19.54 -0.11 -8.30 16 6 C 0.13 3.02 6.29 85.56 0.54 3.56 16 7 N -0.85 -18.94 9.61 -190.01 -1.83 -20.77 16 8 C 0.41 16.30 7.30 134.29 0.98 17.28 16 9 N -0.79 -33.61 12.09 -54.48 -0.66 -34.27 16 10 N -0.45 -18.28 2.86 -339.83 -0.97 -19.25 16 11 C 0.32 14.82 5.32 132.68 0.71 15.53 16 12 C -0.22 -11.35 8.53 22.98 0.20 -11.15 16 13 C 0.11 5.90 5.54 -21.11 -0.12 5.78 16 14 C -0.49 -25.68 9.11 23.52 0.21 -25.46 16 15 H 0.08 3.96 7.87 -2.91 -0.02 3.94 16 16 C 0.04 1.98 5.25 85.29 0.45 2.43 16 17 N -0.82 -40.97 11.06 21.84 0.24 -40.73 16 18 Si 0.99 36.81 29.58 68.60 2.03 38.84 16 19 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 20 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 21 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 22 C -0.22 -10.74 8.74 22.84 0.20 -10.54 16 23 C 0.11 4.63 11.15 84.51 0.94 5.57 16 24 N -0.57 -25.37 8.57 -193.42 -1.66 -27.03 16 25 H 0.11 2.97 8.05 -2.39 -0.02 2.95 16 26 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.07 2.26 6.93 -2.39 -0.02 2.24 16 28 H 0.19 3.69 8.03 -2.91 -0.02 3.67 16 29 H 0.11 1.96 8.01 -2.39 -0.02 1.94 16 30 H 0.03 0.65 7.23 -2.38 -0.02 0.63 16 31 H 0.36 5.90 9.08 -89.69 -0.81 5.08 16 32 H 0.33 8.76 8.62 -89.69 -0.77 7.99 16 33 H 0.35 12.80 6.76 -92.71 -0.63 12.17 16 34 H 0.09 4.91 7.52 -2.91 -0.02 4.89 16 35 H 0.29 13.18 8.29 -92.71 -0.77 12.42 16 36 H 0.12 6.04 6.48 -2.91 -0.02 6.02 16 37 H 0.17 5.93 8.06 -2.91 -0.02 5.91 16 Total: -1.00 -63.46 314.17 0.74 -62.72 By element: Atomic # 1 Polarization: 47.42 SS G_CDS: -1.06 Total: 46.36 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 6.57 Total: 13.49 kcal Atomic # 7 Polarization: -154.62 SS G_CDS: -6.79 Total: -161.41 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Total: -63.46 0.74 -62.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156830622.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.120 kcal (2) G-P(sol) polarization free energy of solvation -63.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds