Wall clock time and date at job start Tue Mar 31 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50709 * 109.46850 * 2 1 4 4 N 1.31581 * 119.87051 * 90.00362 * 3 2 1 5 5 C 1.33175 * 120.08724 * 179.97438 * 4 3 2 6 6 C 1.43206 * 120.08419 * 179.97438 * 5 4 3 7 7 N 5.84457 * 105.79174 * 36.85136 * 2 1 3 8 8 C 1.40612 * 119.82723 * 0.02562 * 5 4 3 9 9 C 1.43205 * 120.13076 * 179.97438 * 8 5 4 10 10 N 6.76655 * 109.47556 * 359.32609 * 2 1 3 11 11 N 1.33005 * 119.74123 * 0.25016 * 8 5 4 12 12 C 1.32492 * 119.90983 * 359.49418 * 11 8 5 13 13 N 1.38593 * 119.91709 * 180.22994 * 12 11 8 14 14 C 1.46505 * 119.99812 * 0.27830 * 13 12 11 15 15 C 1.52991 * 109.47014 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.47084 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.47304 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99825 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00235 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99700 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00189 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47201 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47262 * 120.00042 * 21 19 17 24 24 H 1.48500 * 109.47274 * 240.00304 * 21 19 17 25 25 H 1.09001 * 109.47276 * 300.00056 * 1 2 3 26 26 H 1.08998 * 109.47335 * 60.00520 * 1 2 3 27 27 H 1.09004 * 109.46865 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47276 * 239.99944 * 2 1 3 29 29 H 1.08998 * 109.47335 * 119.99480 * 2 1 3 30 30 H 0.96997 * 120.00121 * 180.27431 * 13 12 11 31 31 H 1.09000 * 109.47134 * 300.00054 * 14 13 12 32 32 H 1.09001 * 109.46693 * 60.00077 * 14 13 12 33 33 H 1.09000 * 109.47531 * 300.00199 * 15 14 13 34 34 H 1.09007 * 109.47260 * 60.00290 * 15 14 13 35 35 H 1.09002 * 109.46619 * 299.99683 * 16 15 14 36 36 H 1.08994 * 109.47425 * 60.00315 * 16 15 14 37 37 H 0.97003 * 120.00159 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2507 2.0388 1.1410 5 6 2.6951 3.2942 1.1460 6 6 2.9323 3.9667 2.3879 7 7 3.1205 4.5003 3.3729 8 6 2.9296 3.9580 -0.0712 9 6 3.4069 5.3081 -0.0733 10 7 3.7860 6.3789 -0.0750 11 7 2.7013 3.3288 -1.2205 12 6 2.2641 2.0781 -1.2135 13 7 2.0306 1.4207 -2.4111 14 6 2.2730 2.1068 -3.6826 15 6 1.9396 1.1655 -4.8417 16 6 2.1935 1.8818 -6.1696 17 6 1.8645 0.9548 -7.3114 18 1 1.5102 -0.0454 -7.1100 19 6 2.0157 1.3834 -8.6130 20 7 2.4476 2.6012 -8.8582 21 14 1.6072 0.2347 -10.0282 22 1 1.1454 -1.0698 -9.4893 23 1 0.5333 0.8355 -10.8594 24 1 2.8188 0.0247 -10.8608 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.7067 0.5064 -2.4073 31 1 1.6433 2.9945 -3.7423 32 1 3.3211 2.4001 -3.7431 33 1 2.5696 0.2780 -4.7818 34 1 0.8916 0.8718 -4.7814 35 1 1.5637 2.7694 -6.2297 36 1 3.2415 2.1750 -6.2298 37 1 2.5537 2.9030 -9.7740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157642944.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:10 Heat of formation + Delta-G solvation = 80.331204 kcal Electronic energy + Delta-G solvation = -20541.908493 eV Core-core repulsion = 17318.755893 eV Total energy + Delta-G solvation = -3223.152600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.69530 -38.82477 -37.96077 -37.58516 -36.22383 -35.77599 -34.22775 -32.73470 -31.36009 -28.66172 -27.12293 -26.08486 -24.34896 -23.33249 -22.34921 -21.03865 -20.16750 -19.45064 -18.38804 -17.75999 -17.12601 -16.48637 -16.14541 -15.83236 -15.69288 -14.90364 -14.84324 -14.81291 -14.70220 -14.46185 -14.32355 -14.21235 -14.11390 -13.81160 -13.68300 -13.26221 -12.96252 -12.82678 -12.48687 -12.47683 -12.37038 -12.27200 -11.85266 -11.67762 -11.45591 -11.16401 -11.13959 -10.57325 -10.51708 -9.06720 -8.16119 -6.26199 -1.14700 -0.33614 0.98690 1.23428 1.42741 1.44010 1.45518 1.57083 1.69974 1.71683 2.08223 2.24301 2.45192 2.63038 2.99028 3.18946 3.21730 3.51331 3.68573 4.16815 4.30730 4.31988 4.45133 4.47211 4.64549 4.93150 5.03665 5.11786 5.14479 5.23903 5.25505 5.51347 5.55856 5.57559 5.68439 5.79074 5.90926 5.94999 6.09384 6.25098 6.28045 6.67587 6.93024 7.43702 8.95791 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.021305 B = 0.003149 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.917703 B = 8890.951505 C =10095.038962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.071 4.071 3 C 0.089 3.911 4 N -0.369 5.369 5 C 0.110 3.890 6 C 0.287 3.713 7 N -0.412 5.412 8 C 0.255 3.745 9 C 0.272 3.728 10 N -0.389 5.389 11 N -0.493 5.493 12 C 0.399 3.601 13 N -0.668 5.668 14 C 0.131 3.869 15 C -0.106 4.106 16 C 0.023 3.977 17 C -0.535 4.535 18 H 0.068 0.932 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.961 3.039 22 H -0.256 1.256 23 H -0.283 1.283 24 H -0.284 1.284 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.432 0.568 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.071 0.929 35 H -0.007 1.007 36 H -0.007 1.007 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.543 -8.789 18.288 20.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.070 4.070 4 N -0.082 5.082 5 C -0.032 4.032 6 C -0.030 4.030 7 N -0.089 5.089 8 C 0.110 3.890 9 C -0.046 4.046 10 N -0.066 5.066 11 N -0.217 5.217 12 C 0.151 3.849 13 N -0.299 5.299 14 C 0.007 3.993 15 C -0.144 4.144 16 C -0.015 4.015 17 C -0.573 4.573 18 H 0.086 0.914 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.786 3.214 22 H -0.180 1.180 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.275 0.725 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.011 0.989 36 H 0.011 0.989 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.598 -6.104 19.458 20.557 hybrid contribution -0.216 -0.585 -1.573 1.692 sum -2.814 -6.689 17.885 19.301 Atomic orbital electron populations 1.21792 0.92737 1.03960 1.02314 1.20718 0.97304 0.86459 1.06464 1.22435 0.99489 0.99728 0.85310 1.68124 1.06285 1.04931 1.28824 1.16290 1.08932 0.92131 0.85809 1.24588 0.93486 0.93129 0.91801 1.81277 1.08830 1.08729 1.10107 1.16423 0.96487 0.87333 0.88711 1.24827 0.94156 0.91874 0.93735 1.81279 1.07191 1.11404 1.06735 1.67952 1.17824 1.09148 1.26815 1.19395 0.89020 0.87778 0.88673 1.44924 1.66547 1.16848 1.01572 1.21445 1.01143 0.95693 0.80992 1.21618 1.01965 0.98180 0.92590 1.18939 0.95163 0.95116 0.92273 1.21745 1.43523 1.00263 0.91811 0.91396 1.25960 0.95287 0.96614 1.02213 1.70106 1.47926 1.18970 1.20607 0.85461 0.77634 0.79429 0.78893 1.17981 1.20954 1.20967 0.92676 0.92564 0.89351 0.87370 0.87219 0.72493 0.91995 0.91981 0.91046 0.91055 0.98883 0.98866 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 71.98 0.71 -0.33 16 2 C -0.07 -0.50 5.79 29.85 0.17 -0.33 16 3 C 0.09 1.26 6.07 43.01 0.26 1.52 16 4 N -0.37 -6.37 10.33 -175.06 -1.81 -8.18 16 5 C 0.11 2.19 6.62 40.77 0.27 2.46 16 6 C 0.29 6.46 14.62 88.33 1.29 7.75 16 7 N -0.41 -10.73 18.54 19.00 0.35 -10.37 16 8 C 0.26 5.56 6.62 40.79 0.27 5.83 16 9 C 0.27 6.84 14.62 88.33 1.29 8.13 16 10 N -0.39 -11.20 18.54 19.00 0.35 -10.85 16 11 N -0.49 -11.22 9.63 -185.16 -1.78 -13.00 16 12 C 0.40 7.17 7.47 133.37 1.00 8.17 16 13 N -0.67 -11.30 5.60 -344.66 -1.93 -13.23 16 14 C 0.13 3.34 5.69 86.38 0.49 3.83 16 15 C -0.11 -3.25 5.27 30.59 0.16 -3.09 16 16 C 0.02 1.06 4.97 29.85 0.15 1.21 16 17 C -0.54 -27.59 9.11 25.60 0.23 -27.36 16 18 H 0.07 3.27 7.74 -2.91 -0.02 3.24 16 19 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 20 N -0.94 -54.77 13.29 21.45 0.28 -54.49 16 21 Si 0.96 41.70 29.54 68.60 2.03 43.73 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 28 H 0.11 0.35 6.54 -2.39 -0.02 0.33 16 29 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.43 4.66 6.43 -92.71 -0.60 4.06 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 35 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 36 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 37 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -65.91 339.41 4.78 -61.13 By element: Atomic # 1 Polarization: -3.34 SS G_CDS: 0.52 Total: -2.81 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 6.76 Total: 8.07 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -4.53 Total: -110.11 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -65.91 4.78 -61.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157642944.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.458 kcal (2) G-P(sol) polarization free energy of solvation -65.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds