Wall clock time and date at job start Tue Mar 31 2020 05:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86799 * 120.00219 * 2 1 4 4 H 1.48495 * 109.46958 * 274.98397 * 3 2 1 5 5 H 1.48499 * 109.47168 * 34.98631 * 3 2 1 6 6 H 1.48502 * 109.46768 * 154.98711 * 3 2 1 7 7 C 1.40054 * 119.99564 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00400 * 186.32740 * 7 2 1 9 9 C 1.41315 * 120.00143 * 6.32424 * 7 2 1 10 10 C 1.40778 * 120.16910 * 173.80758 * 9 7 2 11 11 N 1.31863 * 119.88409 * 179.97438 * 10 9 7 12 12 C 1.32225 * 120.25080 * 359.97438 * 11 10 9 13 13 C 1.39668 * 120.34384 * 0.02562 * 12 11 10 14 14 N 1.39716 * 119.94630 * 179.97438 * 13 12 11 15 15 C 1.36109 * 126.07354 * 180.02562 * 14 13 12 16 16 C 1.34525 * 107.49041 * 180.02562 * 15 14 13 17 17 C 1.40600 * 108.09593 * 359.92371 * 16 15 14 18 18 N 1.30131 * 108.37259 * 0.10298 * 17 16 15 19 19 C 1.50977 * 123.44705 * 180.17806 * 17 16 15 20 20 C 1.53365 * 108.20155 * 16.71156 * 19 17 16 21 21 C 1.53022 * 109.75742 * 309.28584 * 20 19 17 22 22 H 1.09002 * 109.42758 * 311.68476 * 21 20 19 23 23 N 1.46897 * 109.42929 * 191.78254 * 21 20 19 24 24 C 1.50895 * 128.26936 * 179.87754 * 16 15 14 25 25 N 1.32176 * 120.10521 * 0.27269 * 13 12 11 26 26 H 0.97010 * 119.99759 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.05649 * 0.02562 * 10 9 7 28 28 H 1.07998 * 119.83116 * 180.02562 * 12 11 10 29 29 H 1.07998 * 126.24894 * 0.07930 * 15 14 13 30 30 H 1.09000 * 109.71731 * 257.03185 * 19 17 16 31 31 H 1.09004 * 109.71874 * 136.38833 * 19 17 16 32 32 H 1.09000 * 109.42410 * 189.19582 * 20 19 17 33 33 H 1.08998 * 109.42427 * 69.37515 * 20 19 17 34 34 H 1.00897 * 110.99595 * 180.02562 * 23 21 20 35 35 H 1.00894 * 111.00055 * 303.95160 * 23 21 20 36 36 H 1.08997 * 109.72190 * 76.96827 * 24 16 15 37 37 H 1.09001 * 109.75756 * 316.33691 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1071 -1.3947 5 1 1.4955 2.6199 0.8028 6 1 3.5876 1.4119 0.5920 7 6 2.0075 -1.2130 -0.0005 8 1 3.0825 -1.2160 0.1025 9 6 1.3073 -2.4330 -0.1359 10 6 2.0139 -3.6434 -0.2678 11 7 1.3549 -4.7786 -0.3932 12 6 0.0327 -4.7845 -0.3951 13 6 -0.6785 -3.5895 -0.2649 14 7 -2.0755 -3.6054 -0.2685 15 6 -2.8896 -2.5209 -0.1511 16 6 -4.1597 -2.9616 -0.2004 17 6 -4.1315 -4.3588 -0.3545 18 7 -2.8885 -4.7421 -0.3938 19 6 -5.3743 -5.2104 -0.4530 20 6 -6.5594 -4.2926 -0.7776 21 6 -6.5865 -3.1170 0.2016 22 1 -6.4809 -3.4908 1.2200 23 7 -7.8639 -2.4032 0.0729 24 6 -5.4325 -2.1560 -0.1113 25 7 -0.0319 -2.4430 -0.1443 26 1 -0.4850 0.8402 0.0004 27 1 3.0940 -3.6423 -0.2654 28 1 -0.5002 -5.7182 -0.4979 29 1 -2.5736 -1.4942 -0.0397 30 1 -5.5499 -5.7159 0.4966 31 1 -5.2526 -5.9482 -1.2461 32 1 -7.4884 -4.8564 -0.6928 33 1 -6.4573 -3.9148 -1.7949 34 1 -7.9069 -1.6213 0.7092 35 1 -8.0165 -2.1036 -0.8784 36 1 -5.6183 -1.6554 -1.0615 37 1 -5.3450 -1.4154 0.6836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157983919.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:35 Heat of formation + Delta-G solvation = 111.415459 kcal Electronic energy + Delta-G solvation = -21731.138664 eV Core-core repulsion = 18509.333978 eV Total energy + Delta-G solvation = -3221.804686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.16594 -39.10795 -37.29454 -34.28662 -33.58261 -32.18567 -31.41375 -30.72912 -28.84485 -27.17592 -26.00412 -24.46762 -22.59876 -21.86282 -21.04714 -20.21831 -18.85574 -17.65433 -16.92582 -15.91065 -15.52694 -15.34394 -15.17192 -15.05197 -14.84769 -14.28909 -13.57513 -13.36652 -13.19280 -12.99255 -12.78178 -12.37445 -11.96274 -11.77787 -11.71879 -11.55524 -11.50506 -10.99801 -10.97114 -10.78235 -10.58696 -10.09344 -10.00610 -9.80892 -9.75682 -8.85111 -8.83857 -8.34901 -7.79005 -7.39027 -6.78529 -4.93405 1.71779 2.58093 2.87759 2.90872 2.94523 3.00358 3.03627 3.13566 3.68751 4.41120 4.45363 4.60310 4.81723 5.06187 5.21302 5.40858 5.45454 5.50308 5.54262 5.61633 5.77724 5.80869 5.87490 5.95444 5.97981 6.01913 6.16896 6.25716 6.46159 6.49165 6.62074 6.75786 6.82149 6.97572 7.12089 7.31953 7.32218 7.68116 7.81575 8.13193 8.24834 8.43348 8.99710 9.50627 9.90010 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.004764 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.518073 B = 5876.505856 C = 7289.735964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.066 3.934 3 Si 0.918 3.082 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.405 4.405 8 H 0.098 0.902 9 C 0.230 3.770 10 C -0.065 4.065 11 N -0.412 5.412 12 C -0.104 4.104 13 C 0.339 3.661 14 N -0.305 5.305 15 C 0.105 3.895 16 C -0.258 4.258 17 C 0.075 3.925 18 N -0.280 5.280 19 C -0.031 4.031 20 C -0.107 4.107 21 C 0.092 3.908 22 H 0.083 0.917 23 N -0.846 5.846 24 C -0.064 4.064 25 N -0.477 5.477 26 H 0.279 0.721 27 H 0.142 0.858 28 H 0.140 0.860 29 H 0.183 0.817 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.340 0.660 35 H 0.338 0.662 36 H 0.063 0.937 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.982 0.820 -0.328 11.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.161 4.161 3 Si 0.741 3.259 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.437 4.437 8 H 0.116 0.884 9 C 0.103 3.897 10 C -0.237 4.237 11 N -0.124 5.124 12 C -0.264 4.264 13 C 0.103 3.897 14 N -0.081 5.081 15 C -0.038 4.038 16 C -0.270 4.270 17 C -0.094 4.094 18 N -0.099 5.099 19 C -0.071 4.071 20 C -0.145 4.145 21 C -0.019 4.019 22 H 0.101 0.899 23 N -0.373 5.373 24 C -0.104 4.104 25 N -0.199 5.199 26 H 0.090 0.910 27 H 0.160 0.840 28 H 0.157 0.843 29 H 0.201 0.799 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.081 0.919 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.627 -0.737 -0.194 10.655 hybrid contribution 0.582 2.462 -0.223 2.540 sum -10.046 1.725 -0.417 10.201 Atomic orbital electron populations 1.70038 1.07651 1.28679 1.26835 1.26169 0.95021 1.01728 0.93183 0.86125 0.80556 0.79831 0.79385 1.19156 1.19845 1.18079 1.19724 0.95276 0.88914 1.39791 0.88409 1.19136 0.86589 0.93794 0.90219 1.23283 0.99704 0.89091 1.11573 1.67799 1.07590 1.29872 1.07094 1.22123 0.90145 0.96320 1.17802 1.19051 0.80235 0.93411 0.96971 1.45766 1.03685 1.04210 1.54443 1.22534 0.89069 0.94908 0.97332 1.19830 0.94272 0.93836 1.19019 1.22383 0.93237 0.93977 0.99849 1.77024 1.00889 1.07612 1.24411 1.20030 0.88198 0.95984 1.02883 1.21542 0.97699 0.96124 0.99136 1.21495 0.86444 0.93764 1.00196 0.89932 1.59025 1.34136 1.32785 1.11390 1.20745 0.91734 0.96910 1.01057 1.68730 1.09110 1.22066 1.19987 0.91020 0.84042 0.84274 0.79946 0.89876 0.89901 0.90366 0.91802 0.84729 0.84993 0.91884 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.05 11.51 55.55 0.64 -16.41 16 2 C 0.07 1.52 5.49 -17.34 -0.10 1.42 16 3 Si 0.92 16.83 29.57 -169.99 -5.03 11.80 16 4 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 5 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 6 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 7 C -0.41 -9.84 9.15 -37.73 -0.35 -10.18 16 8 H 0.10 2.15 7.86 -52.49 -0.41 1.74 16 9 C 0.23 5.97 6.54 -84.82 -0.55 5.41 16 10 C -0.07 -1.59 10.98 -16.58 -0.18 -1.78 16 11 N -0.41 -10.31 10.47 -12.16 -0.13 -10.44 16 12 C -0.10 -2.61 10.85 -16.85 -0.18 -2.79 16 13 C 0.34 8.62 7.56 -154.31 -1.17 7.45 16 14 N -0.30 -6.99 3.81 -12.09 -0.05 -7.04 16 15 C 0.10 2.16 11.07 -16.97 -0.19 1.97 16 16 C -0.26 -4.42 5.89 -104.95 -0.62 -5.04 16 17 C 0.08 1.30 7.10 -82.29 -0.58 0.72 16 18 N -0.28 -5.86 11.83 33.78 0.40 -5.46 16 19 C -0.03 -0.39 6.31 -27.56 -0.17 -0.56 16 20 C -0.11 -1.13 5.40 -26.53 -0.14 -1.27 16 21 C 0.09 1.01 3.19 -67.50 -0.22 0.79 16 22 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 23 N -0.85 -7.60 9.25 -4.49 -0.04 -7.64 16 24 C -0.06 -0.82 5.85 -27.59 -0.16 -0.98 16 25 N -0.48 -12.64 7.59 -9.99 -0.08 -12.72 16 26 H 0.28 5.98 8.29 -40.82 -0.34 5.64 16 27 H 0.14 3.03 8.06 -52.49 -0.42 2.61 16 28 H 0.14 3.30 7.68 -52.49 -0.40 2.90 16 29 H 0.18 3.82 8.06 -52.49 -0.42 3.40 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.34 2.67 9.03 -39.29 -0.35 2.31 16 35 H 0.34 2.67 8.98 -39.29 -0.35 2.32 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 315.60 15.07 4.76 4.76 Total: -1.00 -28.80 315.60 -8.59 -37.39 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.46 Total: 10.60 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -4.61 Total: -4.84 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.75 Total: -59.71 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.80 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.80 -8.59 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157983919.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.804 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds