Wall clock time and date at job start Tue Mar 31 2020 05:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86799 * 120.00219 * 2 1 4 4 H 1.48495 * 109.46958 * 274.98397 * 3 2 1 5 5 H 1.48499 * 109.47168 * 34.98631 * 3 2 1 6 6 H 1.48502 * 109.46768 * 154.98711 * 3 2 1 7 7 C 1.40054 * 119.99564 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00400 * 186.32740 * 7 2 1 9 9 C 1.41315 * 120.00143 * 6.32424 * 7 2 1 10 10 C 1.40778 * 120.16910 * 173.80758 * 9 7 2 11 11 N 1.31863 * 119.88409 * 179.97438 * 10 9 7 12 12 C 1.32225 * 120.25080 * 359.97438 * 11 10 9 13 13 C 1.39668 * 120.34384 * 0.02562 * 12 11 10 14 14 N 1.39716 * 119.94630 * 179.97438 * 13 12 11 15 15 C 1.36109 * 126.07354 * 180.02562 * 14 13 12 16 16 C 1.34525 * 107.49041 * 180.02562 * 15 14 13 17 17 C 1.40600 * 108.09593 * 359.92371 * 16 15 14 18 18 N 1.30131 * 108.37259 * 0.10298 * 17 16 15 19 19 C 1.50977 * 123.44705 * 180.17806 * 17 16 15 20 20 C 1.53365 * 108.20155 * 16.71156 * 19 17 16 21 21 C 1.53022 * 109.75742 * 309.28584 * 20 19 17 22 22 H 1.09002 * 109.42758 * 311.68476 * 21 20 19 23 23 N 1.46897 * 109.42929 * 191.78254 * 21 20 19 24 24 C 1.50895 * 128.26936 * 179.87754 * 16 15 14 25 25 N 1.32176 * 120.10521 * 0.27269 * 13 12 11 26 26 H 0.97010 * 119.99759 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.05649 * 0.02562 * 10 9 7 28 28 H 1.07998 * 119.83116 * 180.02562 * 12 11 10 29 29 H 1.07998 * 126.24894 * 0.07930 * 15 14 13 30 30 H 1.09000 * 109.71731 * 257.03185 * 19 17 16 31 31 H 1.09004 * 109.71874 * 136.38833 * 19 17 16 32 32 H 1.09000 * 109.42410 * 189.19582 * 20 19 17 33 33 H 1.08998 * 109.42427 * 69.37515 * 20 19 17 34 34 H 1.00897 * 110.99595 * 180.02562 * 23 21 20 35 35 H 1.00894 * 111.00055 * 303.95160 * 23 21 20 36 36 H 1.08997 * 109.72190 * 76.96827 * 24 16 15 37 37 H 1.09001 * 109.75756 * 316.33691 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1071 -1.3947 5 1 1.4955 2.6199 0.8028 6 1 3.5876 1.4119 0.5920 7 6 2.0075 -1.2130 -0.0005 8 1 3.0825 -1.2160 0.1025 9 6 1.3073 -2.4330 -0.1359 10 6 2.0139 -3.6434 -0.2678 11 7 1.3549 -4.7786 -0.3932 12 6 0.0327 -4.7845 -0.3951 13 6 -0.6785 -3.5895 -0.2649 14 7 -2.0755 -3.6054 -0.2685 15 6 -2.8896 -2.5209 -0.1511 16 6 -4.1597 -2.9616 -0.2004 17 6 -4.1315 -4.3588 -0.3545 18 7 -2.8885 -4.7421 -0.3938 19 6 -5.3743 -5.2104 -0.4530 20 6 -6.5594 -4.2926 -0.7776 21 6 -6.5865 -3.1170 0.2016 22 1 -6.4809 -3.4908 1.2200 23 7 -7.8639 -2.4032 0.0729 24 6 -5.4325 -2.1560 -0.1113 25 7 -0.0319 -2.4430 -0.1443 26 1 -0.4850 0.8402 0.0004 27 1 3.0940 -3.6423 -0.2654 28 1 -0.5002 -5.7182 -0.4979 29 1 -2.5736 -1.4942 -0.0397 30 1 -5.5499 -5.7159 0.4966 31 1 -5.2526 -5.9482 -1.2461 32 1 -7.4884 -4.8564 -0.6928 33 1 -6.4573 -3.9148 -1.7949 34 1 -7.9069 -1.6213 0.7092 35 1 -8.0165 -2.1036 -0.8784 36 1 -5.6183 -1.6554 -1.0615 37 1 -5.3450 -1.4154 0.6836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157983919.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:34 Heat of formation + Delta-G solvation = 92.634410 kcal Electronic energy + Delta-G solvation = -21731.953072 eV Core-core repulsion = 18509.333978 eV Total energy + Delta-G solvation = -3222.619093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.67486 -40.91401 -38.36800 -36.09630 -35.09327 -33.66277 -32.92140 -32.09285 -30.41130 -28.62054 -27.60955 -25.77320 -24.38913 -23.37889 -22.17001 -21.77481 -20.27818 -19.27722 -18.66529 -17.28346 -17.18109 -16.88322 -16.62967 -16.53871 -16.02897 -15.54799 -15.00168 -14.75973 -14.50904 -14.16694 -14.12871 -13.70706 -13.56689 -13.39152 -13.16714 -13.00398 -12.80482 -12.58653 -12.08063 -12.05110 -11.88330 -11.71028 -11.69596 -11.36947 -11.31225 -10.56276 -9.99424 -9.68804 -9.58732 -9.05905 -8.56038 -6.82236 -0.01899 0.78106 1.26040 1.30509 1.40275 1.53093 1.56124 1.69391 2.14289 2.66730 3.30656 3.60051 3.60850 3.78776 3.92229 3.92637 3.99040 4.08942 4.26013 4.34185 4.40238 4.59084 4.67823 4.70771 4.72440 4.84365 4.91062 5.00437 5.02625 5.03915 5.23383 5.26329 5.39346 5.47919 5.68485 5.91780 6.03933 6.30024 6.36891 6.56060 6.65008 6.68861 7.10542 7.62794 8.17714 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.004764 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.518073 B = 5876.505856 C = 7289.735964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.021 3.979 3 Si 1.000 3.000 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.247 1.247 7 C -0.417 4.417 8 H 0.117 0.883 9 C 0.196 3.804 10 C -0.076 4.076 11 N -0.419 5.419 12 C -0.129 4.129 13 C 0.334 3.666 14 N -0.328 5.328 15 C 0.072 3.928 16 C -0.237 4.237 17 C 0.084 3.916 18 N -0.312 5.312 19 C -0.031 4.031 20 C -0.100 4.100 21 C 0.100 3.900 22 H 0.077 0.923 23 N -0.841 5.841 24 C -0.062 4.062 25 N -0.502 5.502 26 H 0.288 0.712 27 H 0.167 0.833 28 H 0.143 0.857 29 H 0.170 0.830 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.349 0.651 35 H 0.347 0.653 36 H 0.075 0.925 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.567 2.032 -0.344 12.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.203 4.203 3 Si 0.819 3.181 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.170 1.170 7 C -0.448 4.448 8 H 0.135 0.865 9 C 0.069 3.931 10 C -0.248 4.248 11 N -0.131 5.131 12 C -0.288 4.288 13 C 0.097 3.903 14 N -0.106 5.106 15 C -0.069 4.069 16 C -0.248 4.248 17 C -0.087 4.087 18 N -0.131 5.131 19 C -0.070 4.070 20 C -0.138 4.138 21 C -0.012 4.012 22 H 0.095 0.905 23 N -0.369 5.369 24 C -0.103 4.103 25 N -0.225 5.225 26 H 0.099 0.901 27 H 0.184 0.816 28 H 0.160 0.840 29 H 0.187 0.813 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.093 0.907 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.253 0.460 -0.210 12.263 hybrid contribution 0.933 2.123 -0.211 2.328 sum -11.320 2.583 -0.421 11.618 Atomic orbital electron populations 1.70125 1.09401 1.30336 1.26139 1.27198 0.95801 1.05151 0.92171 0.84908 0.79299 0.74525 0.79401 1.18852 1.19223 1.16954 1.20259 0.96401 0.89207 1.38949 0.86494 1.19669 0.87055 0.95111 0.91218 1.23637 1.00807 0.88654 1.11671 1.67772 1.07757 1.30236 1.07299 1.22172 0.90399 0.96559 1.19669 1.19267 0.81680 0.93257 0.96085 1.45783 1.03044 1.05310 1.56431 1.22639 0.90319 0.94271 0.99697 1.20348 0.94555 0.94305 1.15598 1.23318 0.93539 0.94846 0.96960 1.77010 1.02264 1.07699 1.26101 1.20317 0.86323 0.96057 1.04316 1.21529 0.97538 0.95791 0.98974 1.21372 0.86298 0.93531 0.99954 0.90475 1.59003 1.32297 1.33335 1.12306 1.20941 0.90193 0.97132 1.02006 1.68774 1.09579 1.22605 1.21568 0.90085 0.81566 0.83983 0.81305 0.88187 0.88665 0.88094 0.91661 0.83818 0.84000 0.90656 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.04 11.51 21.84 0.25 -35.79 16 2 C 0.02 0.97 5.49 85.30 0.47 1.44 16 3 Si 1.00 33.60 29.57 68.60 2.03 35.63 16 4 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 5 H -0.27 -8.68 7.11 99.48 0.71 -7.97 16 6 H -0.25 -7.82 7.11 99.48 0.71 -7.11 16 7 C -0.42 -20.38 9.15 23.47 0.21 -20.16 16 8 H 0.12 5.06 7.86 -2.91 -0.02 5.04 16 9 C 0.20 10.50 6.54 40.20 0.26 10.76 16 10 C -0.08 -3.81 10.98 85.31 0.94 -2.87 16 11 N -0.42 -21.75 10.47 -192.37 -2.01 -23.77 16 12 C -0.13 -6.79 10.85 84.98 0.92 -5.86 16 13 C 0.33 17.87 7.56 133.01 1.01 18.87 16 14 N -0.33 -15.76 3.81 -192.17 -0.73 -16.49 16 15 C 0.07 3.07 11.07 83.18 0.92 3.99 16 16 C -0.24 -8.03 5.89 -20.08 -0.12 -8.14 16 17 C 0.08 2.85 7.10 43.47 0.31 3.16 16 18 N -0.31 -13.37 11.83 -47.04 -0.56 -13.93 16 19 C -0.03 -0.69 6.31 30.06 0.19 -0.50 16 20 C -0.10 -1.78 5.40 30.72 0.17 -1.61 16 21 C 0.10 1.88 3.19 45.05 0.14 2.03 16 22 H 0.08 1.58 8.10 -2.39 -0.02 1.56 16 23 N -0.84 -12.21 9.25 -168.10 -1.56 -13.77 16 24 C -0.06 -1.47 5.85 30.04 0.18 -1.30 16 25 N -0.50 -27.86 7.59 -185.53 -1.41 -29.27 16 26 H 0.29 12.47 8.29 -92.70 -0.77 11.70 16 27 H 0.17 7.20 8.06 -2.91 -0.02 7.17 16 28 H 0.14 7.13 7.68 -2.91 -0.02 7.11 16 29 H 0.17 7.52 8.06 -2.91 -0.02 7.50 16 30 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 34 H 0.35 4.35 9.03 -89.70 -0.81 3.54 16 35 H 0.35 4.22 8.98 -89.70 -0.81 3.42 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -65.00 315.60 1.12 -63.89 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: -0.49 Total: 33.69 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 5.60 Total: -0.20 kcal Atomic # 7 Polarization: -126.99 SS G_CDS: -6.02 Total: -133.01 kcal Atomic # 14 Polarization: 33.60 SS G_CDS: 2.03 Total: 35.63 kcal Total: -65.00 1.12 -63.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157983919.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.521 kcal (2) G-P(sol) polarization free energy of solvation -65.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds