Wall clock time and date at job start Tue Mar 31 2020 05:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30727 * 1 3 3 Si 1.86794 * 119.99969 * 2 1 4 4 H 1.48496 * 109.47284 * 274.98715 * 3 2 1 5 5 H 1.48502 * 109.47012 * 34.98732 * 3 2 1 6 6 H 1.48502 * 109.47417 * 154.98579 * 3 2 1 7 7 C 1.40056 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00292 * 186.32474 * 7 2 1 9 9 C 1.41317 * 120.00041 * 6.32215 * 7 2 1 10 10 C 1.40776 * 120.16946 * 173.81013 * 9 7 2 11 11 N 1.31855 * 119.88635 * 180.02562 * 10 9 7 12 12 C 1.32226 * 120.25219 * 0.02562 * 11 10 9 13 13 C 1.39667 * 120.33965 * 0.02562 * 12 11 10 14 14 N 1.39719 * 119.94282 * 179.97438 * 13 12 11 15 15 C 1.36111 * 126.06811 * 179.97438 * 14 13 12 16 16 C 1.34532 * 107.48960 * 179.97438 * 15 14 13 17 17 C 1.40606 * 108.08886 * 0.08241 * 16 15 14 18 18 N 1.30126 * 108.37500 * 359.89620 * 17 16 15 19 19 C 1.50986 * 123.44406 * 179.72045 * 17 16 15 20 20 C 1.53363 * 108.20729 * 343.40003 * 19 17 16 21 21 C 1.53028 * 109.75563 * 50.67471 * 20 19 17 22 22 H 1.09000 * 109.38589 * 48.26956 * 21 20 19 23 23 N 1.46895 * 109.43182 * 168.14695 * 21 20 19 24 24 C 1.50886 * 128.27327 * 180.16254 * 16 15 14 25 25 N 1.32174 * 120.10639 * 0.23035 * 13 12 11 26 26 H 0.96998 * 120.00518 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.05566 * 0.02562 * 10 9 7 28 28 H 1.08000 * 119.82986 * 179.97438 * 12 11 10 29 29 H 1.07997 * 126.25834 * 359.97438 * 15 14 13 30 30 H 1.08997 * 109.71694 * 103.08198 * 19 17 16 31 31 H 1.09003 * 109.71118 * 223.72084 * 19 17 16 32 32 H 1.09004 * 109.42232 * 290.59338 * 20 19 17 33 33 H 1.08992 * 109.42533 * 170.76361 * 20 19 17 34 34 H 1.00894 * 110.99900 * 180.25234 * 23 21 20 35 35 H 1.00904 * 111.00132 * 304.20317 * 23 21 20 36 36 H 1.08994 * 109.72588 * 283.05340 * 24 16 15 37 37 H 1.08997 * 109.71744 * 43.70911 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.3833 2.1073 -1.3947 5 1 1.4953 2.6199 0.8028 6 1 3.5875 1.4121 0.5920 7 6 2.0076 -1.2129 -0.0005 8 1 3.0826 -1.2158 0.1025 9 6 1.3075 -2.4330 -0.1359 10 6 2.0142 -3.6433 -0.2677 11 7 1.3553 -4.7784 -0.3941 12 6 0.0330 -4.7843 -0.3980 13 6 -0.6782 -3.5892 -0.2690 14 7 -2.0753 -3.6050 -0.2748 15 6 -2.8894 -2.5205 -0.1577 16 6 -4.1595 -2.9609 -0.2104 17 6 -4.1311 -4.3583 -0.3627 18 7 -2.8881 -4.7415 -0.4021 19 6 -5.3739 -5.2109 -0.4541 20 6 -6.5606 -4.3842 0.0560 21 6 -6.5844 -3.0250 -0.6467 22 1 -6.4737 -3.1712 -1.7212 23 7 -7.8633 -2.3559 -0.3736 24 6 -5.4323 -2.1547 -0.1289 25 7 -0.0317 -2.4429 -0.1465 26 1 -0.4851 0.8400 -0.0004 27 1 3.0942 -3.6421 -0.2653 28 1 -0.4997 -5.7179 -0.5024 29 1 -2.5735 -1.4941 -0.0433 30 1 -5.5459 -5.5003 -1.4908 31 1 -5.2545 -6.1021 0.1621 32 1 -6.4626 -4.2346 1.1313 33 1 -7.4890 -4.9160 -0.1520 34 1 -7.9059 -1.4572 -0.8302 35 1 -8.6412 -2.9375 -0.6468 36 1 -5.6224 -1.8708 0.9061 37 1 -5.3413 -1.2604 -0.7453 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157983920.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:37 Heat of formation + Delta-G solvation = 93.929286 kcal Electronic energy + Delta-G solvation = -21718.988358 eV Core-core repulsion = 18496.425415 eV Total energy + Delta-G solvation = -3222.562943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.66500 -40.90331 -38.30628 -36.08585 -35.07390 -33.63518 -32.92339 -32.17858 -30.39301 -28.71040 -27.66811 -25.74410 -24.38875 -23.36383 -22.08861 -21.77137 -20.17837 -19.20118 -18.66345 -17.32657 -17.19980 -16.81330 -16.62332 -16.32473 -16.06123 -15.96599 -14.94007 -14.92077 -14.54714 -14.29645 -13.72249 -13.58119 -13.55503 -13.32625 -13.18963 -13.02636 -12.80933 -12.64157 -12.08566 -12.06060 -11.87976 -11.83337 -11.68490 -11.36654 -11.22662 -10.55548 -9.97757 -9.65592 -9.52710 -9.05446 -8.54784 -6.81200 -0.00965 0.79177 1.26720 1.31368 1.41197 1.53992 1.57099 1.70139 2.15264 2.67861 3.25208 3.58128 3.61315 3.81450 3.92755 3.94306 4.03827 4.07237 4.24309 4.33897 4.43802 4.61428 4.68432 4.70409 4.75596 4.85443 4.90924 5.01607 5.04030 5.06268 5.18719 5.27414 5.40323 5.48666 5.70079 5.92665 6.05157 6.32030 6.37961 6.57007 6.65587 6.72589 7.11511 7.63931 8.19042 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019064 B = 0.004754 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.396420 B = 5888.851168 C = 7305.477022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.021 3.979 3 Si 1.000 3.000 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.247 1.247 7 C -0.417 4.417 8 H 0.117 0.883 9 C 0.196 3.804 10 C -0.076 4.076 11 N -0.419 5.419 12 C -0.129 4.129 13 C 0.334 3.666 14 N -0.328 5.328 15 C 0.073 3.927 16 C -0.238 4.238 17 C 0.083 3.917 18 N -0.311 5.311 19 C -0.031 4.031 20 C -0.101 4.101 21 C 0.100 3.900 22 H 0.039 0.961 23 N -0.848 5.848 24 C -0.025 4.025 25 N -0.502 5.502 26 H 0.289 0.711 27 H 0.167 0.833 28 H 0.143 0.857 29 H 0.171 0.829 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.349 0.651 35 H 0.353 0.647 36 H 0.076 0.924 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.382 0.974 -1.382 13.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.203 4.203 3 Si 0.819 3.181 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.170 1.170 7 C -0.448 4.448 8 H 0.135 0.865 9 C 0.069 3.931 10 C -0.248 4.248 11 N -0.131 5.131 12 C -0.288 4.288 13 C 0.098 3.902 14 N -0.106 5.106 15 C -0.068 4.068 16 C -0.249 4.249 17 C -0.088 4.088 18 N -0.130 5.130 19 C -0.070 4.070 20 C -0.139 4.139 21 C -0.011 4.011 22 H 0.057 0.943 23 N -0.380 5.380 24 C -0.063 4.063 25 N -0.225 5.225 26 H 0.099 0.901 27 H 0.184 0.816 28 H 0.160 0.840 29 H 0.188 0.812 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.162 0.838 35 H 0.168 0.832 36 H 0.094 0.906 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.487 0.070 -0.725 12.508 hybrid contribution 0.121 1.252 -0.929 1.564 sum -12.366 1.323 -1.654 12.546 Atomic orbital electron populations 1.70115 1.09403 1.30386 1.26070 1.27196 0.95795 1.05152 0.92195 0.84909 0.79285 0.74541 0.79400 1.18837 1.19246 1.16957 1.20261 0.96395 0.89205 1.38943 0.86489 1.19667 0.87047 0.95112 0.91226 1.23633 1.00802 0.88657 1.11686 1.67768 1.07755 1.30232 1.07304 1.22168 0.90395 0.96542 1.19707 1.19262 0.81640 0.93262 0.96081 1.45778 1.03059 1.05302 1.56416 1.22604 0.90200 0.94325 0.99631 1.20359 0.94627 0.94299 1.15606 1.23312 0.93578 0.94789 0.97097 1.76992 1.02212 1.07704 1.26094 1.20337 0.86399 0.96436 1.03878 1.21539 0.97502 0.94260 1.00591 1.21197 0.89184 0.93693 0.97072 0.94331 1.58624 1.03219 1.08370 1.67809 1.19961 0.88114 0.96245 1.02013 1.68771 1.09588 1.22623 1.21548 0.90050 0.81567 0.83974 0.81189 0.88109 0.88612 0.91728 0.88037 0.83821 0.83241 0.90601 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.27 11.51 21.84 0.25 -36.02 16 2 C 0.02 0.97 5.49 85.30 0.47 1.44 16 3 Si 1.00 33.83 29.56 68.60 2.03 35.86 16 4 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 5 H -0.27 -8.77 7.11 99.48 0.71 -8.06 16 6 H -0.25 -7.87 7.11 99.48 0.71 -7.16 16 7 C -0.42 -20.46 9.15 23.47 0.21 -20.24 16 8 H 0.12 5.08 7.86 -2.91 -0.02 5.06 16 9 C 0.20 10.54 6.54 40.20 0.26 10.80 16 10 C -0.08 -3.82 10.98 85.31 0.94 -2.89 16 11 N -0.42 -21.80 10.47 -192.37 -2.01 -23.81 16 12 C -0.13 -6.81 10.85 84.98 0.92 -5.89 16 13 C 0.33 17.97 7.56 133.01 1.01 18.98 16 14 N -0.33 -15.87 3.81 -192.16 -0.73 -16.60 16 15 C 0.07 3.18 11.07 83.18 0.92 4.10 16 16 C -0.24 -8.30 5.89 -20.08 -0.12 -8.42 16 17 C 0.08 2.85 7.10 43.48 0.31 3.16 16 18 N -0.31 -13.43 11.83 -47.03 -0.56 -13.98 16 19 C -0.03 -0.70 6.31 30.06 0.19 -0.51 16 20 C -0.10 -1.82 5.42 30.73 0.17 -1.65 16 21 C 0.10 1.93 3.19 45.06 0.14 2.07 16 22 H 0.04 0.76 8.10 -2.39 -0.02 0.74 16 23 N -0.85 -12.56 9.25 -168.11 -1.55 -14.11 16 24 C -0.02 -0.63 5.86 30.04 0.18 -0.46 16 25 N -0.50 -27.99 7.59 -185.53 -1.41 -29.40 16 26 H 0.29 12.59 8.29 -92.71 -0.77 11.82 16 27 H 0.17 7.22 8.06 -2.91 -0.02 7.19 16 28 H 0.14 7.15 7.68 -2.91 -0.02 7.12 16 29 H 0.17 7.67 8.06 -2.91 -0.02 7.65 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 31 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 1.33 8.10 -2.39 -0.02 1.32 16 33 H 0.10 1.23 8.07 -2.39 -0.02 1.21 16 34 H 0.35 4.46 9.04 -89.70 -0.81 3.65 16 35 H 0.35 3.68 8.93 -89.69 -0.80 2.88 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -65.75 315.49 1.12 -64.62 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: -0.49 Total: 32.95 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 5.60 Total: 0.50 kcal Atomic # 7 Polarization: -127.92 SS G_CDS: -6.01 Total: -133.93 kcal Atomic # 14 Polarization: 33.83 SS G_CDS: 2.03 Total: 35.86 kcal Total: -65.75 1.12 -64.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157983920.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.554 kcal (2) G-P(sol) polarization free energy of solvation -65.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds