Wall clock time and date at job start Tue Mar 31 2020 05:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86797 * 119.99854 * 2 1 4 4 H 1.48508 * 109.47138 * 240.00028 * 3 2 1 5 5 H 1.48501 * 109.47465 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47241 * 120.00128 * 3 2 1 7 7 C 1.40049 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00024 * 172.97622 * 7 2 1 9 9 C 1.41265 * 119.99787 * 353.24963 * 7 2 1 10 10 C 1.40734 * 120.16080 * 186.11427 * 9 7 2 11 11 N 1.31905 * 119.93387 * 180.02562 * 10 9 7 12 12 C 1.32157 * 120.27134 * 359.97438 * 11 10 9 13 13 C 1.39912 * 120.32554 * 359.97438 * 12 11 10 14 14 N 1.38889 * 119.97327 * 180.02562 * 13 12 11 15 15 C 1.46500 * 119.99636 * 92.04402 * 14 13 12 16 16 C 1.53001 * 109.47051 * 90.00437 * 15 14 13 17 17 N 1.46897 * 109.47088 * 179.97438 * 16 15 14 18 18 C 1.39762 * 120.00162 * 272.04864 * 14 13 12 19 19 C 1.39326 * 120.49206 * 175.37489 * 18 14 13 20 20 C 1.38499 * 118.35363 * 179.73473 * 19 18 14 21 21 C 1.38274 * 119.23859 * 0.53965 * 20 19 18 22 22 N 1.31857 * 120.93623 * 359.72433 * 21 20 19 23 23 C 1.31815 * 121.79644 * 359.97438 * 22 21 20 24 24 N 1.32298 * 120.05982 * 359.72324 * 13 12 11 25 25 H 0.97001 * 120.00005 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.03402 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.84108 * 179.97438 * 12 11 10 28 28 H 1.08997 * 109.47349 * 210.00163 * 15 14 13 29 29 H 1.08998 * 109.47704 * 330.00073 * 15 14 13 30 30 H 1.08998 * 109.47433 * 299.99607 * 16 15 14 31 31 H 1.09002 * 109.47245 * 60.00054 * 16 15 14 32 32 H 1.00901 * 111.00091 * 179.97438 * 17 16 15 33 33 H 1.00893 * 111.00573 * 303.95379 * 17 16 15 34 34 H 1.08000 * 120.82576 * 0.02562 * 19 18 14 35 35 H 1.07994 * 120.37612 * 180.24372 * 20 19 18 36 36 H 1.08008 * 119.53011 * 179.74526 * 21 20 19 37 37 H 1.08004 * 119.66899 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0951 1.6964 -1.2126 5 1 1.2763 2.7465 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0815 -1.2163 -0.1138 9 6 1.3087 -2.4319 0.1449 10 6 2.0162 -3.6415 0.2750 11 7 1.3590 -4.7773 0.4090 12 6 0.0375 -4.7848 0.4222 13 6 -0.6770 -3.5887 0.2948 14 7 -2.0658 -3.6050 0.3102 15 6 -2.7864 -3.4270 1.5732 16 6 -3.0564 -1.9383 1.8009 17 7 -3.7796 -1.7599 3.0670 18 6 -2.7757 -3.7912 -0.8792 19 6 -4.1642 -3.9053 -0.8634 20 6 -4.8233 -4.0833 -2.0684 21 6 -4.0874 -4.1528 -3.2370 22 7 -2.7732 -4.0467 -3.2178 23 6 -2.1070 -3.8706 -2.0941 24 7 -0.0310 -2.4414 0.1657 25 1 -0.4850 0.8400 -0.0004 26 1 3.0961 -3.6399 0.2643 27 1 -0.4936 -5.7188 0.5320 28 1 -3.7331 -3.9655 1.5304 29 1 -2.1836 -3.8166 2.3935 30 1 -2.1098 -1.3997 1.8438 31 1 -3.6593 -1.5488 0.9806 32 1 -3.9696 -0.7843 3.2406 33 1 -4.6307 -2.3017 3.0769 34 1 -4.7133 -3.8515 0.0650 35 1 -5.8993 -4.1717 -2.0944 36 1 -4.5963 -4.2957 -4.1789 37 1 -1.0304 -3.7877 -2.1182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158001791.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:03 Heat of formation + Delta-G solvation = 96.460992 kcal Electronic energy + Delta-G solvation = -22324.317150 eV Core-core repulsion = 19101.863990 eV Total energy + Delta-G solvation = -3222.453160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.14872 -38.95904 -36.81101 -34.30079 -34.02176 -32.17022 -31.58309 -30.23280 -29.47951 -26.94980 -25.91811 -23.54670 -22.96724 -22.27019 -21.84941 -20.38681 -17.95522 -17.35523 -16.73680 -16.14472 -15.74482 -15.44491 -15.30030 -14.95821 -14.78136 -14.06732 -13.80027 -13.62544 -13.28849 -13.12429 -12.73497 -12.51605 -12.10457 -11.76646 -11.69891 -11.54610 -11.42806 -10.96474 -10.91514 -10.56804 -10.16284 -9.95367 -9.68404 -9.26168 -9.22777 -9.02491 -8.59100 -7.95902 -7.79214 -7.08618 -6.56541 -4.83292 1.60687 1.80243 2.23535 2.80101 2.95186 2.96596 3.07444 3.33332 3.74830 4.29416 4.46592 4.80863 5.01916 5.02982 5.19888 5.28949 5.40904 5.44617 5.53088 5.70928 5.74592 5.79796 5.88513 6.12554 6.18647 6.26111 6.42601 6.47273 6.51716 6.63424 6.85563 6.92539 6.96179 7.18722 7.35261 7.50974 7.68343 7.82799 7.91580 8.32306 8.48909 8.53719 9.08603 9.63201 9.97828 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013666 B = 0.006170 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.323356 B = 4537.029530 C = 4807.924099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.066 3.934 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.405 4.405 8 H 0.093 0.907 9 C 0.215 3.785 10 C -0.061 4.061 11 N -0.421 5.421 12 C -0.108 4.108 13 C 0.321 3.679 14 N -0.548 5.548 15 C 0.137 3.863 16 C 0.043 3.957 17 N -0.849 5.849 18 C 0.191 3.809 19 C -0.164 4.164 20 C -0.129 4.129 21 C 0.022 3.978 22 N -0.449 5.449 23 C 0.052 3.948 24 N -0.451 5.451 25 H 0.277 0.723 26 H 0.137 0.863 27 H 0.126 0.874 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.026 0.974 32 H 0.342 0.658 33 H 0.332 0.668 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.145 0.855 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.023 -1.015 1.183 9.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.162 4.162 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.437 4.437 8 H 0.112 0.888 9 C 0.088 3.912 10 C -0.232 4.232 11 N -0.132 5.132 12 C -0.269 4.269 13 C 0.084 3.916 14 N -0.254 5.254 15 C 0.013 3.987 16 C -0.089 4.089 17 N -0.378 5.378 18 C 0.086 3.914 19 C -0.195 4.195 20 C -0.149 4.149 21 C -0.137 4.137 22 N -0.157 5.157 23 C -0.112 4.112 24 N -0.170 5.170 25 H 0.088 0.912 26 H 0.155 0.845 27 H 0.143 0.857 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.044 0.956 32 H 0.154 0.846 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.163 0.837 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.024 -1.206 0.902 8.164 hybrid contribution -0.994 1.380 0.250 1.719 sum -9.018 0.175 1.151 9.093 Atomic orbital electron populations 1.70077 1.07337 1.28553 1.26238 1.26147 0.95018 1.01516 0.93509 0.86276 0.80109 0.79757 0.80220 1.18609 1.20123 1.18617 1.19654 0.95221 0.89154 1.39653 0.88846 1.19255 0.87709 0.93514 0.90677 1.23228 0.99504 0.89212 1.11231 1.67717 1.08153 1.29947 1.07398 1.22567 0.90536 0.96705 1.17081 1.19120 0.83450 0.91293 0.97727 1.43368 1.02327 1.75542 1.04213 1.21302 0.96533 0.95646 0.85197 1.22296 1.00120 0.97522 0.88933 1.58657 1.28202 1.14589 1.36354 1.18849 0.91491 0.93714 0.87393 1.20993 0.92169 1.07447 0.98878 1.21773 1.00426 0.99799 0.92946 1.22343 0.89879 1.03657 0.97788 1.67501 1.09616 1.09274 1.29322 1.22339 1.00257 1.02397 0.86157 1.69209 1.08378 1.24237 1.15134 0.91173 0.84512 0.85694 0.91230 0.90057 0.88613 0.95592 0.84584 0.85690 0.85417 0.85519 0.83725 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.18 11.51 55.55 0.64 -16.54 16 2 C 0.07 1.53 5.49 -17.34 -0.10 1.44 16 3 Si 0.91 17.32 29.56 -169.99 -5.03 12.30 16 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.41 -9.90 9.15 -37.75 -0.35 -10.24 16 8 H 0.09 2.09 7.86 -52.49 -0.41 1.67 16 9 C 0.21 5.47 6.54 -84.83 -0.55 4.91 16 10 C -0.06 -1.46 10.97 -16.58 -0.18 -1.64 16 11 N -0.42 -10.04 10.47 -12.11 -0.13 -10.17 16 12 C -0.11 -2.47 11.17 -16.79 -0.19 -2.66 16 13 C 0.32 7.31 4.54 -154.92 -0.70 6.61 16 14 N -0.55 -10.62 2.70 -113.33 -0.31 -10.93 16 15 C 0.14 2.24 5.53 -4.04 -0.02 2.22 16 16 C 0.04 0.71 7.11 -3.83 -0.03 0.68 16 17 N -0.85 -11.11 9.62 -10.37 -0.10 -11.21 16 18 C 0.19 3.58 6.53 -83.59 -0.55 3.03 16 19 C -0.16 -2.51 9.34 -39.08 -0.37 -2.88 16 20 C -0.13 -1.78 10.10 -39.47 -0.40 -2.17 16 21 C 0.02 0.33 11.18 -17.53 -0.20 0.14 16 22 N -0.45 -8.64 10.35 -13.07 -0.14 -8.77 16 23 C 0.05 1.07 10.48 -17.32 -0.18 0.89 16 24 N -0.45 -11.36 8.10 -10.12 -0.08 -11.44 16 25 H 0.28 6.25 8.29 -40.82 -0.34 5.92 16 26 H 0.14 2.94 8.06 -52.49 -0.42 2.52 16 27 H 0.13 2.63 8.06 -52.49 -0.42 2.21 16 28 H 0.07 0.93 6.08 -51.93 -0.32 0.61 16 29 H 0.08 1.41 8.05 -51.93 -0.42 0.99 16 30 H 0.10 2.00 8.14 -51.93 -0.42 1.57 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.34 4.03 9.08 -39.29 -0.36 3.67 16 33 H 0.33 3.50 8.99 -39.30 -0.35 3.15 16 34 H 0.13 1.63 6.18 -52.49 -0.32 1.31 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.15 1.78 8.06 -52.48 -0.42 1.36 16 37 H 0.15 3.44 7.01 -52.48 -0.37 3.07 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -28.17 321.84 -8.31 -36.48 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -4.22 Total: 15.11 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -3.80 Total: 0.33 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -0.11 Total: -69.07 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.17 -8.31 -36.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158001791.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.941 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds