Wall clock time and date at job start Tue Mar 31 2020 05:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86797 * 119.99854 * 2 1 4 4 H 1.48508 * 109.47138 * 240.00028 * 3 2 1 5 5 H 1.48501 * 109.47465 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47241 * 120.00128 * 3 2 1 7 7 C 1.40049 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00024 * 172.97622 * 7 2 1 9 9 C 1.41265 * 119.99787 * 353.24963 * 7 2 1 10 10 C 1.40734 * 120.16080 * 186.11427 * 9 7 2 11 11 N 1.31905 * 119.93387 * 180.02562 * 10 9 7 12 12 C 1.32157 * 120.27134 * 359.97438 * 11 10 9 13 13 C 1.39912 * 120.32554 * 359.97438 * 12 11 10 14 14 N 1.38889 * 119.97327 * 180.02562 * 13 12 11 15 15 C 1.46500 * 119.99636 * 92.04402 * 14 13 12 16 16 C 1.53001 * 109.47051 * 90.00437 * 15 14 13 17 17 N 1.46897 * 109.47088 * 179.97438 * 16 15 14 18 18 C 1.39762 * 120.00162 * 272.04864 * 14 13 12 19 19 C 1.39326 * 120.49206 * 175.37489 * 18 14 13 20 20 C 1.38499 * 118.35363 * 179.73473 * 19 18 14 21 21 C 1.38274 * 119.23859 * 0.53965 * 20 19 18 22 22 N 1.31857 * 120.93623 * 359.72433 * 21 20 19 23 23 C 1.31815 * 121.79644 * 359.97438 * 22 21 20 24 24 N 1.32298 * 120.05982 * 359.72324 * 13 12 11 25 25 H 0.97001 * 120.00005 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.03402 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.84108 * 179.97438 * 12 11 10 28 28 H 1.08997 * 109.47349 * 210.00163 * 15 14 13 29 29 H 1.08998 * 109.47704 * 330.00073 * 15 14 13 30 30 H 1.08998 * 109.47433 * 299.99607 * 16 15 14 31 31 H 1.09002 * 109.47245 * 60.00054 * 16 15 14 32 32 H 1.00901 * 111.00091 * 179.97438 * 17 16 15 33 33 H 1.00893 * 111.00573 * 303.95379 * 17 16 15 34 34 H 1.08000 * 120.82576 * 0.02562 * 19 18 14 35 35 H 1.07994 * 120.37612 * 180.24372 * 20 19 18 36 36 H 1.08008 * 119.53011 * 179.74526 * 21 20 19 37 37 H 1.08004 * 119.66899 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0951 1.6964 -1.2126 5 1 1.2763 2.7465 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0815 -1.2163 -0.1138 9 6 1.3087 -2.4319 0.1449 10 6 2.0162 -3.6415 0.2750 11 7 1.3590 -4.7773 0.4090 12 6 0.0375 -4.7848 0.4222 13 6 -0.6770 -3.5887 0.2948 14 7 -2.0658 -3.6050 0.3102 15 6 -2.7864 -3.4270 1.5732 16 6 -3.0564 -1.9383 1.8009 17 7 -3.7796 -1.7599 3.0670 18 6 -2.7757 -3.7912 -0.8792 19 6 -4.1642 -3.9053 -0.8634 20 6 -4.8233 -4.0833 -2.0684 21 6 -4.0874 -4.1528 -3.2370 22 7 -2.7732 -4.0467 -3.2178 23 6 -2.1070 -3.8706 -2.0941 24 7 -0.0310 -2.4414 0.1657 25 1 -0.4850 0.8400 -0.0004 26 1 3.0961 -3.6399 0.2643 27 1 -0.4936 -5.7188 0.5320 28 1 -3.7331 -3.9655 1.5304 29 1 -2.1836 -3.8166 2.3935 30 1 -2.1098 -1.3997 1.8438 31 1 -3.6593 -1.5488 0.9806 32 1 -3.9696 -0.7843 3.2406 33 1 -4.6307 -2.3017 3.0769 34 1 -4.7133 -3.8515 0.0650 35 1 -5.8993 -4.1717 -2.0944 36 1 -4.5963 -4.2957 -4.1789 37 1 -1.0304 -3.7877 -2.1182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158001791.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:02 Heat of formation + Delta-G solvation = 76.445065 kcal Electronic energy + Delta-G solvation = -22325.185106 eV Core-core repulsion = 19101.863990 eV Total energy + Delta-G solvation = -3223.321116 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.63187 -40.58756 -38.25106 -36.00906 -35.41435 -33.82316 -33.06312 -31.80963 -30.90274 -28.47304 -27.60925 -25.02875 -24.38987 -24.01044 -23.28243 -21.86207 -19.66131 -18.86311 -18.24563 -17.49178 -17.34079 -17.14067 -16.82488 -16.49316 -16.12449 -15.36176 -15.14187 -15.04499 -14.75911 -14.66219 -14.25980 -13.85608 -13.53719 -13.39567 -13.36222 -13.04756 -12.95552 -12.63471 -12.28403 -12.11518 -11.73018 -11.60365 -11.49335 -10.97575 -10.50602 -10.39655 -9.78729 -9.71405 -9.54769 -8.65369 -8.26471 -6.71011 0.31412 0.43921 0.51982 1.00623 1.38026 1.49381 1.51530 1.89754 2.14742 2.68488 2.97308 3.58190 3.68013 3.71047 3.78673 3.98872 4.01096 4.05912 4.12873 4.17846 4.34427 4.38517 4.46777 4.57485 4.70119 4.81935 4.85373 5.03851 5.06833 5.14271 5.16856 5.25544 5.56307 5.70412 6.01142 6.08977 6.17576 6.34693 6.53243 6.60149 6.73281 7.16289 7.23794 7.79975 8.22630 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013666 B = 0.006170 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.323356 B = 4537.029530 C = 4807.924099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.023 3.977 3 Si 0.990 3.010 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.429 4.429 8 H 0.106 0.894 9 C 0.185 3.815 10 C -0.080 4.080 11 N -0.430 5.430 12 C -0.119 4.119 13 C 0.328 3.672 14 N -0.555 5.555 15 C 0.139 3.861 16 C 0.061 3.939 17 N -0.845 5.845 18 C 0.172 3.828 19 C -0.152 4.152 20 C -0.109 4.109 21 C 0.021 3.979 22 N -0.479 5.479 23 C 0.014 3.986 24 N -0.474 5.474 25 H 0.281 0.719 26 H 0.154 0.846 27 H 0.141 0.859 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.023 0.977 32 H 0.351 0.649 33 H 0.352 0.648 34 H 0.162 0.838 35 H 0.180 0.820 36 H 0.181 0.819 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.930 -0.641 1.382 12.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.201 4.201 3 Si 0.810 3.190 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.460 4.460 8 H 0.124 0.876 9 C 0.059 3.941 10 C -0.249 4.249 11 N -0.141 5.141 12 C -0.280 4.280 13 C 0.090 3.910 14 N -0.263 5.263 15 C 0.016 3.984 16 C -0.071 4.071 17 N -0.378 5.378 18 C 0.068 3.932 19 C -0.182 4.182 20 C -0.129 4.129 21 C -0.139 4.139 22 N -0.188 5.188 23 C -0.147 4.147 24 N -0.193 5.193 25 H 0.092 0.908 26 H 0.171 0.829 27 H 0.158 0.842 28 H 0.128 0.872 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.179 0.821 35 H 0.197 0.803 36 H 0.198 0.802 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.930 -0.854 1.113 11.020 hybrid contribution -0.288 1.183 0.109 1.222 sum -11.218 0.329 1.222 11.289 Atomic orbital electron populations 1.70186 1.08945 1.29657 1.26556 1.27072 0.95765 1.04767 0.92508 0.85123 0.78630 0.74873 0.80415 1.18002 1.19546 1.17921 1.20083 0.96085 0.89720 1.40113 0.87571 1.19717 0.88460 0.94585 0.91356 1.23446 1.00330 0.89012 1.12159 1.67701 1.08818 1.30018 1.07608 1.22873 0.90526 0.97566 1.17072 1.19319 0.85262 0.90598 0.95838 1.43406 1.01001 1.76384 1.05515 1.21439 0.97585 0.95871 0.83525 1.21913 0.98067 0.96924 0.90233 1.58539 1.29271 1.15735 1.34215 1.18991 0.93043 0.94903 0.86234 1.21438 0.90350 1.05307 1.01112 1.22325 1.02814 0.96454 0.91259 1.23083 0.88652 1.01803 1.00318 1.67405 1.11857 1.10408 1.29110 1.21794 0.98651 1.06316 0.87941 1.69251 1.08543 1.25556 1.15997 0.90789 0.82870 0.84203 0.87156 0.91446 0.93696 0.95908 0.83593 0.83423 0.82105 0.80253 0.80250 0.87969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.26 11.51 21.84 0.25 -37.01 16 2 C 0.02 1.11 5.49 85.30 0.47 1.58 16 3 Si 0.99 35.82 29.56 68.60 2.03 37.85 16 4 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 5 H -0.27 -9.46 7.11 99.48 0.71 -8.76 16 6 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 7 C -0.43 -21.78 9.15 23.45 0.21 -21.56 16 8 H 0.11 4.89 7.86 -2.91 -0.02 4.86 16 9 C 0.19 9.94 6.54 40.17 0.26 10.21 16 10 C -0.08 -4.02 10.97 85.29 0.94 -3.09 16 11 N -0.43 -21.44 10.47 -192.23 -2.01 -23.45 16 12 C -0.12 -5.70 11.17 85.05 0.95 -4.75 16 13 C 0.33 15.67 4.54 133.32 0.61 16.27 16 14 N -0.56 -21.84 2.70 -512.46 -1.38 -23.22 16 15 C 0.14 4.40 5.53 86.38 0.48 4.88 16 16 C 0.06 1.98 7.11 86.30 0.61 2.59 16 17 N -0.85 -20.62 9.62 -186.72 -1.80 -22.42 16 18 C 0.17 6.41 6.53 38.30 0.25 6.66 16 19 C -0.15 -4.10 9.34 22.59 0.21 -3.89 16 20 C -0.11 -2.46 10.10 22.34 0.23 -2.24 16 21 C 0.02 0.59 11.18 84.70 0.95 1.54 16 22 N -0.48 -18.48 10.35 -195.27 -2.02 -20.50 16 23 C 0.01 0.61 10.48 84.85 0.89 1.50 16 24 N -0.47 -25.29 8.10 -185.94 -1.51 -26.79 16 25 H 0.28 13.10 8.29 -92.71 -0.77 12.33 16 26 H 0.15 6.89 8.06 -2.91 -0.02 6.87 16 27 H 0.14 6.07 8.06 -2.91 -0.02 6.05 16 28 H 0.11 2.56 6.08 -2.39 -0.01 2.54 16 29 H 0.07 2.32 8.05 -2.39 -0.02 2.31 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.35 7.69 9.08 -89.69 -0.81 6.88 16 33 H 0.35 6.27 8.99 -89.70 -0.81 5.47 16 34 H 0.16 3.22 6.18 -2.91 -0.02 3.21 16 35 H 0.18 2.27 8.06 -2.91 -0.02 2.24 16 36 H 0.18 3.65 8.06 -2.91 -0.02 3.63 16 37 H 0.10 5.21 7.01 -2.91 -0.02 5.19 16 Total: -1.00 -66.93 321.84 0.11 -66.82 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: -0.50 Total: 39.01 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 7.05 Total: 9.71 kcal Atomic # 7 Polarization: -144.93 SS G_CDS: -8.47 Total: -153.40 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Total: -66.93 0.11 -66.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158001791.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.266 kcal (2) G-P(sol) polarization free energy of solvation -66.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds