Wall clock time and date at job start Tue Mar 31 2020 05:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35911 * 116.99941 * 2 1 4 4 C 1.39141 * 120.47464 * 0.25160 * 3 2 1 5 5 C 1.38535 * 118.37144 * 180.26673 * 4 3 2 6 6 C 1.38252 * 119.22485 * 359.74735 * 5 4 3 7 7 N 1.31843 * 120.88255 * 359.97438 * 6 5 4 8 8 C 1.31842 * 121.78683 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.66398 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.47197 * 90.00062 * 9 8 7 11 11 C 1.39080 * 120.00106 * 180.02562 * 10 9 8 12 12 C 1.38748 * 119.65666 * 359.96898 * 11 10 9 13 13 C 1.40776 * 118.66635 * 180.02562 * 12 11 10 14 14 C 1.41548 * 120.99071 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00032 * 330.83053 * 14 13 12 16 16 C 1.40030 * 120.00359 * 150.83368 * 14 13 12 17 17 N 1.30743 * 120.00143 * 161.63396 * 16 14 13 18 18 Si 1.86802 * 119.99661 * 341.63848 * 16 14 13 19 19 H 1.48501 * 109.47188 * 95.39325 * 18 16 14 20 20 H 1.48501 * 109.46750 * 215.39244 * 18 16 14 21 21 H 1.48500 * 109.46841 * 335.39422 * 18 16 14 22 22 C 1.41187 * 118.01708 * 0.02562 * 13 12 11 23 23 C 1.36557 * 119.14390 * 0.02562 * 22 13 12 24 24 N 1.32100 * 121.27032 * 359.97438 * 23 22 13 25 25 H 1.08999 * 109.46908 * 300.00381 * 1 2 3 26 26 H 1.08995 * 109.46721 * 59.99719 * 1 2 3 27 27 H 1.08998 * 109.47221 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.81121 * 0.02562 * 4 3 2 29 29 H 1.08009 * 120.38825 * 179.73047 * 5 4 3 30 30 H 1.07997 * 119.55648 * 180.02562 * 6 5 4 31 31 H 1.09008 * 109.47148 * 330.00489 * 9 8 7 32 32 H 1.08995 * 109.47592 * 210.00376 * 9 8 7 33 33 H 0.96998 * 119.99598 * 359.97438 * 10 9 8 34 34 H 1.08000 * 120.66271 * 0.05507 * 12 11 10 35 35 H 0.96999 * 119.99865 * 179.97438 * 17 16 14 36 36 H 1.07996 * 120.42858 * 180.02562 * 22 13 12 37 37 H 1.08003 * 119.36919 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2980 2.3841 0.0053 5 6 1.9717 3.5946 -0.0006 6 6 3.3542 3.5976 -0.0061 7 7 4.0334 2.4675 -0.0053 8 6 3.4306 1.2950 0.0002 9 6 4.2542 0.0330 0.0003 10 7 4.5266 -0.3723 1.3815 11 6 5.2754 -1.5164 1.6357 12 6 5.7603 -2.2691 0.5758 13 6 6.5153 -3.4235 0.8570 14 6 7.0334 -4.2276 -0.1864 15 1 6.5178 -4.2809 -1.1339 16 6 8.2143 -4.9541 0.0098 17 7 8.5061 -5.9535 -0.7810 18 14 9.3726 -4.4954 1.4017 19 1 9.0830 -5.3428 2.5864 20 1 10.7765 -4.7124 0.9691 21 1 9.1790 -3.0663 1.7561 22 6 6.7395 -3.7559 2.2107 23 6 6.2208 -2.9543 3.1870 24 7 5.5164 -1.8776 2.8878 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 0.2185 2.3518 0.0098 29 1 1.4234 4.5251 -0.0012 30 1 3.8849 4.5381 -0.0103 31 1 5.1961 0.2138 -0.5178 32 1 3.7055 -0.7590 -0.5093 33 1 4.1853 0.1577 2.1187 34 1 5.5630 -1.9749 -0.4445 35 1 9.3243 -6.4565 -0.6452 36 1 7.3137 -4.6328 2.4708 37 1 6.3897 -3.2054 4.2238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158325135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:38 Heat of formation + Delta-G solvation = 35.158522 kcal Electronic energy + Delta-G solvation = -21270.681451 eV Core-core repulsion = 18013.277265 eV Total energy + Delta-G solvation = -3257.404186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.91193 -38.62470 -38.29964 -35.40230 -33.79602 -32.39594 -31.32450 -30.97583 -28.50033 -27.67929 -26.04009 -25.68762 -23.06816 -22.48102 -21.01382 -20.97363 -18.30723 -17.69723 -17.29310 -16.67521 -16.11201 -15.79282 -15.36491 -14.84990 -14.62844 -14.25105 -14.03760 -13.81457 -13.63917 -13.37762 -13.11329 -12.95420 -12.64499 -12.18482 -12.15784 -11.68871 -11.50674 -11.36391 -10.94144 -10.70114 -10.52243 -9.97769 -9.71065 -9.69746 -9.31890 -9.01643 -8.57392 -8.10802 -7.98383 -6.94171 -6.62202 -4.58513 0.84743 1.06319 2.70726 2.90006 2.97448 3.18438 3.28152 3.40570 3.46311 4.03846 4.06893 4.33899 4.39785 4.48654 4.69613 4.75017 4.87473 4.89194 5.04684 5.23950 5.35291 5.55733 5.64449 5.78088 5.87016 6.01768 6.11159 6.26517 6.53589 6.61730 6.77856 6.81798 6.99256 7.17617 7.35856 7.69917 7.84314 7.85714 8.05956 8.33865 8.59008 8.67930 8.83853 9.59927 10.07769 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.025516 B = 0.003737 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.085187 B = 7490.342782 C = 7623.534681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.297 6.297 3 C 0.097 3.903 4 C -0.171 4.171 5 C -0.131 4.131 6 C 0.057 3.943 7 N -0.431 5.431 8 C 0.093 3.907 9 C 0.198 3.802 10 N -0.731 5.731 11 C 0.410 3.590 12 C -0.323 4.323 13 C 0.140 3.860 14 C -0.443 4.443 15 H 0.091 0.909 16 C 0.089 3.911 17 N -0.804 5.804 18 Si 0.916 3.084 19 H -0.269 1.269 20 H -0.292 1.292 21 H -0.245 1.245 22 C -0.318 4.318 23 C 0.149 3.851 24 N -0.622 5.622 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.105 0.895 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.159 0.841 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.390 0.610 34 H 0.105 0.895 35 H 0.286 0.714 36 H 0.104 0.896 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.600 14.668 0.234 20.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.208 6.208 3 C 0.048 3.952 4 C -0.197 4.197 5 C -0.151 4.151 6 C -0.100 4.100 7 N -0.140 5.140 8 C -0.047 4.047 9 C 0.072 3.928 10 N -0.367 5.367 11 C 0.181 3.819 12 C -0.350 4.350 13 C 0.131 3.869 14 C -0.473 4.473 15 H 0.109 0.891 16 C -0.131 4.131 17 N -0.429 5.429 18 Si 0.743 3.257 19 H -0.195 1.195 20 H -0.220 1.220 21 H -0.169 1.169 22 C -0.343 4.343 23 C -0.003 4.003 24 N -0.345 5.345 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.123 0.877 28 H 0.157 0.843 29 H 0.155 0.845 30 H 0.176 0.824 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.224 0.776 34 H 0.123 0.877 35 H 0.096 0.904 36 H 0.122 0.878 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.817 14.783 0.557 19.573 hybrid contribution -0.517 -0.079 0.067 0.527 sum -13.334 14.704 0.624 19.859 Atomic orbital electron populations 1.23138 0.78270 1.04573 1.01074 1.86251 1.21353 1.25419 1.87763 1.19997 0.93223 0.85338 0.96627 1.21704 1.00787 0.92129 1.05111 1.22009 0.95790 0.98188 0.99086 1.22682 0.91405 0.96501 0.99445 1.67597 1.40002 0.97475 1.08913 1.20855 0.88231 0.94354 1.01269 1.19785 0.97926 0.89888 0.85175 1.43941 1.59936 1.27573 1.05237 1.17941 0.88451 0.85728 0.89785 1.21128 1.16368 1.00677 0.96835 1.17678 0.88215 0.89023 0.91963 1.19467 1.07206 1.20231 1.00421 0.89058 1.26167 0.98814 0.91661 0.96505 1.69664 1.23939 1.13189 1.36071 0.86249 0.77169 0.82138 0.80186 1.19490 1.21962 1.16860 1.21499 1.13709 1.04718 0.94333 1.21294 0.92019 0.89330 0.97652 1.66806 1.26385 1.21577 1.19732 0.92624 0.92642 0.87703 0.84273 0.84523 0.82385 0.90657 0.90492 0.77628 0.87683 0.90383 0.87797 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.83 101.05 0.99 1.19 16 2 O -0.30 -3.78 9.54 -19.46 -0.19 -3.97 16 3 C 0.10 1.23 6.67 -39.07 -0.26 0.97 16 4 C -0.17 -1.64 9.14 -39.14 -0.36 -2.00 16 5 C -0.13 -1.14 10.11 -39.47 -0.40 -1.54 16 6 C 0.06 0.61 11.18 -17.54 -0.20 0.41 16 7 N -0.43 -6.16 10.27 -9.36 -0.10 -6.26 16 8 C 0.09 1.37 6.16 -82.42 -0.51 0.86 16 9 C 0.20 3.38 4.96 -5.20 -0.03 3.35 16 10 N -0.73 -14.26 5.72 -61.65 -0.35 -14.62 16 11 C 0.41 9.60 7.65 -154.98 -1.19 8.42 16 12 C -0.32 -8.03 9.12 -38.43 -0.35 -8.38 16 13 C 0.14 3.70 5.13 -106.56 -0.55 3.16 16 14 C -0.44 -12.27 9.63 -37.65 -0.36 -12.64 16 15 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 16 C 0.09 2.36 5.42 -17.34 -0.09 2.27 16 17 N -0.80 -21.57 13.92 55.55 0.77 -20.80 16 18 Si 0.92 21.35 24.54 -169.99 -4.17 17.18 16 19 H -0.27 -6.03 6.71 56.52 0.38 -5.65 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.25 -5.98 6.85 56.52 0.39 -5.60 16 22 C -0.32 -8.00 7.24 -39.07 -0.28 -8.28 16 23 C 0.15 3.52 11.10 -18.04 -0.20 3.32 16 24 N -0.62 -14.96 10.37 -12.82 -0.13 -15.09 16 25 H 0.06 0.37 7.69 -51.93 -0.40 -0.03 16 26 H 0.05 0.34 7.71 -51.93 -0.40 -0.06 16 27 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.14 0.94 6.45 -52.49 -0.34 0.60 16 29 H 0.14 0.74 8.06 -52.48 -0.42 0.31 16 30 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.08 1.34 7.93 -51.92 -0.41 0.93 16 32 H 0.08 1.33 7.30 -51.93 -0.38 0.95 16 33 H 0.39 7.30 8.59 -40.82 -0.35 6.95 16 34 H 0.11 2.47 6.71 -52.49 -0.35 2.12 16 35 H 0.29 6.92 8.29 -40.82 -0.34 6.58 16 36 H 0.10 2.55 4.76 -52.49 -0.25 2.30 16 37 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 LS Contribution 314.18 15.07 4.73 4.73 Total: -1.00 -31.69 314.18 -7.37 -39.06 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -4.17 Total: 8.64 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -3.78 Total: -8.88 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.19 Total: -56.76 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -0.19 Total: -3.97 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.17 Total: 17.18 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.69 -7.37 -39.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158325135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.222 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds