Wall clock time and date at job start Tue Mar 31 2020 05:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35911 * 116.99941 * 2 1 4 4 C 1.39141 * 120.47464 * 0.25160 * 3 2 1 5 5 C 1.38535 * 118.37144 * 180.26673 * 4 3 2 6 6 C 1.38252 * 119.22485 * 359.74735 * 5 4 3 7 7 N 1.31843 * 120.88255 * 359.97438 * 6 5 4 8 8 C 1.31842 * 121.78683 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.66398 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.47197 * 90.00062 * 9 8 7 11 11 C 1.39080 * 120.00106 * 180.02562 * 10 9 8 12 12 C 1.38748 * 119.65666 * 359.96898 * 11 10 9 13 13 C 1.40776 * 118.66635 * 180.02562 * 12 11 10 14 14 C 1.41548 * 120.99071 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00032 * 330.83053 * 14 13 12 16 16 C 1.40030 * 120.00359 * 150.83368 * 14 13 12 17 17 N 1.30743 * 120.00143 * 161.63396 * 16 14 13 18 18 Si 1.86802 * 119.99661 * 341.63848 * 16 14 13 19 19 H 1.48501 * 109.47188 * 95.39325 * 18 16 14 20 20 H 1.48501 * 109.46750 * 215.39244 * 18 16 14 21 21 H 1.48500 * 109.46841 * 335.39422 * 18 16 14 22 22 C 1.41187 * 118.01708 * 0.02562 * 13 12 11 23 23 C 1.36557 * 119.14390 * 0.02562 * 22 13 12 24 24 N 1.32100 * 121.27032 * 359.97438 * 23 22 13 25 25 H 1.08999 * 109.46908 * 300.00381 * 1 2 3 26 26 H 1.08995 * 109.46721 * 59.99719 * 1 2 3 27 27 H 1.08998 * 109.47221 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.81121 * 0.02562 * 4 3 2 29 29 H 1.08009 * 120.38825 * 179.73047 * 5 4 3 30 30 H 1.07997 * 119.55648 * 180.02562 * 6 5 4 31 31 H 1.09008 * 109.47148 * 330.00489 * 9 8 7 32 32 H 1.08995 * 109.47592 * 210.00376 * 9 8 7 33 33 H 0.96998 * 119.99598 * 359.97438 * 10 9 8 34 34 H 1.08000 * 120.66271 * 0.05507 * 12 11 10 35 35 H 0.96999 * 119.99865 * 179.97438 * 17 16 14 36 36 H 1.07996 * 120.42858 * 180.02562 * 22 13 12 37 37 H 1.08003 * 119.36919 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2980 2.3841 0.0053 5 6 1.9717 3.5946 -0.0006 6 6 3.3542 3.5976 -0.0061 7 7 4.0334 2.4675 -0.0053 8 6 3.4306 1.2950 0.0002 9 6 4.2542 0.0330 0.0003 10 7 4.5266 -0.3723 1.3815 11 6 5.2754 -1.5164 1.6357 12 6 5.7603 -2.2691 0.5758 13 6 6.5153 -3.4235 0.8570 14 6 7.0334 -4.2276 -0.1864 15 1 6.5178 -4.2809 -1.1339 16 6 8.2143 -4.9541 0.0098 17 7 8.5061 -5.9535 -0.7810 18 14 9.3726 -4.4954 1.4017 19 1 9.0830 -5.3428 2.5864 20 1 10.7765 -4.7124 0.9691 21 1 9.1790 -3.0663 1.7561 22 6 6.7395 -3.7559 2.2107 23 6 6.2208 -2.9543 3.1870 24 7 5.5164 -1.8776 2.8878 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 0.2185 2.3518 0.0098 29 1 1.4234 4.5251 -0.0012 30 1 3.8849 4.5381 -0.0103 31 1 5.1961 0.2138 -0.5178 32 1 3.7055 -0.7590 -0.5093 33 1 4.1853 0.1577 2.1187 34 1 5.5630 -1.9749 -0.4445 35 1 9.3243 -6.4565 -0.6452 36 1 7.3137 -4.6328 2.4708 37 1 6.3897 -3.2054 4.2238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158325135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:37 Heat of formation + Delta-G solvation = 12.949269 kcal Electronic energy + Delta-G solvation = -21271.644517 eV Core-core repulsion = 18013.277265 eV Total energy + Delta-G solvation = -3258.367252 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.79427 -40.48692 -39.15939 -36.98769 -35.72208 -33.48891 -33.08173 -32.15411 -30.09351 -28.36746 -27.88858 -27.21749 -23.87248 -23.80027 -22.93784 -22.52761 -19.63679 -19.11676 -18.17736 -18.16665 -17.45575 -17.00193 -16.80889 -16.45878 -16.04397 -15.47306 -15.31775 -15.15731 -15.04792 -14.77551 -14.56594 -14.35820 -14.04058 -13.72717 -13.32237 -13.06878 -12.81646 -12.72949 -12.42106 -12.38434 -12.30324 -11.67196 -11.24605 -10.79922 -10.76722 -10.57220 -10.10672 -9.93284 -9.45615 -8.95674 -8.40744 -6.68677 -0.01922 0.25504 0.77853 0.95732 1.29437 1.43958 1.52299 2.14750 2.21677 2.33020 2.68471 2.89074 3.23365 3.55636 3.62810 3.78457 4.04268 4.10058 4.23936 4.31342 4.35740 4.46944 4.53364 4.61557 4.68026 4.71352 4.75704 4.85570 4.89814 5.02154 5.08862 5.26207 5.42039 5.47358 5.74937 5.90531 6.21358 6.24050 6.28825 6.64320 6.75538 6.88448 6.97072 7.70078 8.11972 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.025516 B = 0.003737 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.085187 B = 7490.342782 C = 7623.534681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.089 3.911 4 C -0.164 4.164 5 C -0.110 4.110 6 C 0.048 3.952 7 N -0.465 5.465 8 C 0.058 3.942 9 C 0.203 3.797 10 N -0.717 5.717 11 C 0.411 3.589 12 C -0.342 4.342 13 C 0.126 3.874 14 C -0.478 4.478 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.835 5.835 18 Si 0.971 3.029 19 H -0.249 1.249 20 H -0.274 1.274 21 H -0.263 1.263 22 C -0.334 4.334 23 C 0.153 3.847 24 N -0.625 5.625 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.110 0.890 28 H 0.174 0.826 29 H 0.182 0.818 30 H 0.185 0.815 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.396 0.604 34 H 0.104 0.896 35 H 0.298 0.702 36 H 0.111 0.889 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.036 16.994 1.922 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.241 6.241 3 C 0.040 3.960 4 C -0.191 4.191 5 C -0.130 4.130 6 C -0.110 4.110 7 N -0.175 5.175 8 C -0.080 4.080 9 C 0.078 3.922 10 N -0.352 5.352 11 C 0.180 3.820 12 C -0.369 4.369 13 C 0.118 3.882 14 C -0.508 4.508 15 H 0.077 0.923 16 C -0.161 4.161 17 N -0.461 5.461 18 Si 0.794 3.206 19 H -0.173 1.173 20 H -0.200 1.200 21 H -0.188 1.188 22 C -0.358 4.358 23 C 0.001 3.999 24 N -0.349 5.349 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.128 0.872 28 H 0.191 0.809 29 H 0.199 0.801 30 H 0.202 0.798 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.230 0.770 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.281 17.104 2.222 22.392 hybrid contribution -0.271 -0.620 -0.491 0.835 sum -14.552 16.484 1.732 22.056 Atomic orbital electron populations 1.23431 0.75975 1.05665 1.02826 1.86203 1.23885 1.26096 1.87900 1.20047 0.92686 0.86489 0.96790 1.22125 1.02371 0.91103 1.03453 1.22497 0.95073 0.99611 0.95797 1.23261 0.92847 0.96210 0.98723 1.67467 1.41574 0.98286 1.10125 1.20367 0.89006 0.93435 1.05183 1.19679 0.97581 0.91564 0.83404 1.44043 1.58370 1.26086 1.06663 1.18150 0.88082 0.86395 0.89387 1.21229 1.17130 1.01045 0.97474 1.17863 0.88453 0.89230 0.92676 1.19461 1.08767 1.22664 0.99910 0.92288 1.26822 0.99370 0.91233 0.98652 1.69666 1.25069 1.13910 1.37450 0.85425 0.76113 0.80839 0.78261 1.17335 1.20041 1.18771 1.21607 1.14771 1.05602 0.93869 1.21903 0.90426 0.88336 0.99267 1.66989 1.26457 1.21857 1.19560 0.90974 0.90607 0.87177 0.80895 0.80106 0.79778 0.92325 0.91484 0.76970 0.87836 0.89129 0.87155 0.81866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.83 113.37 1.11 1.33 16 2 O -0.33 -8.22 9.54 -92.55 -0.88 -9.10 16 3 C 0.09 2.16 6.67 22.60 0.15 2.31 16 4 C -0.16 -2.59 9.14 22.56 0.21 -2.39 16 5 C -0.11 -1.46 10.11 22.34 0.23 -1.24 16 6 C 0.05 0.90 11.18 84.69 0.95 1.85 16 7 N -0.46 -13.09 10.27 -183.51 -1.88 -14.97 16 8 C 0.06 1.73 6.16 42.67 0.26 1.99 16 9 C 0.20 7.27 4.96 85.63 0.43 7.70 16 10 N -0.72 -28.50 5.72 -348.97 -2.00 -30.50 16 11 C 0.41 19.49 7.65 132.91 1.02 20.51 16 12 C -0.34 -17.67 9.12 23.01 0.21 -17.46 16 13 C 0.13 6.90 5.13 -21.12 -0.11 6.79 16 14 C -0.48 -27.80 9.63 23.52 0.23 -27.58 16 15 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 16 C 0.06 3.07 5.42 85.29 0.46 3.54 16 17 N -0.84 -45.82 13.92 21.84 0.30 -45.51 16 18 Si 0.97 43.80 24.54 68.60 1.68 45.49 16 19 H -0.25 -10.36 6.71 99.48 0.67 -9.69 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.26 -12.61 6.85 99.48 0.68 -11.93 16 22 C -0.33 -16.68 7.24 22.60 0.16 -16.51 16 23 C 0.15 6.98 11.10 84.26 0.94 7.91 16 24 N -0.63 -29.50 10.37 -194.47 -2.02 -31.52 16 25 H 0.07 0.75 7.69 -2.39 -0.02 0.73 16 26 H 0.08 0.72 7.71 -2.39 -0.02 0.71 16 27 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.17 1.48 6.45 -2.91 -0.02 1.47 16 29 H 0.18 0.82 8.06 -2.91 -0.02 0.79 16 30 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.06 2.25 7.93 -2.38 -0.02 2.23 16 32 H 0.07 2.49 7.30 -2.39 -0.02 2.47 16 33 H 0.40 14.83 8.59 -92.71 -0.80 14.03 16 34 H 0.10 5.22 6.71 -2.91 -0.02 5.20 16 35 H 0.30 14.52 8.29 -92.71 -0.77 13.75 16 36 H 0.11 5.30 4.76 -2.91 -0.01 5.29 16 37 H 0.16 6.01 8.06 -2.91 -0.02 5.99 16 Total: -1.00 -71.49 314.18 1.70 -69.80 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.25 Total: 27.57 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 6.24 Total: -11.26 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -5.59 Total: -122.50 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.88 Total: -9.10 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.68 Total: 45.49 kcal Total: -71.49 1.70 -69.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158325135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.746 kcal (2) G-P(sol) polarization free energy of solvation -71.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds