Wall clock time and date at job start Tue Mar 31 2020 05:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31453 * 119.81209 * 2 1 4 4 C 1.32755 * 121.73178 * 180.02562 * 3 2 1 5 5 N 1.38469 * 119.42887 * 180.02562 * 4 3 2 6 6 C 1.39084 * 120.00397 * 6.56696 * 5 4 3 7 7 N 1.32711 * 120.08794 * 354.41804 * 6 5 4 8 8 C 1.32185 * 119.91356 * 180.27983 * 7 6 5 9 9 C 1.38249 * 120.10290 * 359.73325 * 8 7 6 10 10 N 1.32242 * 120.18588 * 0.02562 * 9 8 7 11 11 C 1.31958 * 120.08153 * 359.97438 * 10 9 8 12 12 C 1.50701 * 120.04819 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47521 * 89.99689 * 12 11 10 14 14 C 1.39697 * 121.14451 * 0.27217 * 4 3 2 15 15 C 1.36569 * 119.49082 * 359.42815 * 14 4 3 16 16 C 1.40781 * 119.81932 * 179.97438 * 2 1 3 17 17 C 1.41176 * 120.57209 * 0.02562 * 16 2 1 18 18 H 1.08003 * 119.99768 * 21.79824 * 17 16 2 19 19 C 1.39862 * 119.99961 * 201.80408 * 17 16 2 20 20 N 1.30900 * 120.00338 * 15.85288 * 19 17 16 21 21 Si 1.86804 * 119.99897 * 195.85224 * 19 17 16 22 22 H 1.48500 * 109.47214 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47319 * 119.99893 * 21 19 17 24 24 H 1.48505 * 109.47275 * 239.99710 * 21 19 17 25 25 H 1.09000 * 109.47204 * 90.00450 * 1 2 3 26 26 H 1.09007 * 109.46900 * 209.99759 * 1 2 3 27 27 H 1.08998 * 109.47497 * 329.99629 * 1 2 3 28 28 H 0.97002 * 119.99875 * 186.56574 * 5 4 3 29 29 H 1.08002 * 119.94742 * 179.71754 * 8 7 6 30 30 H 1.08004 * 119.90972 * 180.02562 * 9 8 7 31 31 H 1.09003 * 109.47245 * 329.99447 * 12 11 10 32 32 H 1.09006 * 109.47055 * 209.99978 * 12 11 10 33 33 H 1.00899 * 110.99626 * 56.04201 * 13 12 11 34 34 H 1.00897 * 111.00377 * 179.97438 * 13 12 11 35 35 H 1.08000 * 120.25788 * 179.73198 * 14 4 3 36 36 H 1.08000 * 120.79565 * 180.26394 * 15 14 4 37 37 H 0.96999 * 119.99805 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1605 1.1406 0.0000 4 6 3.4873 1.1850 -0.0005 5 7 4.1269 2.4132 0.0001 6 6 3.3869 3.5826 0.1389 7 7 2.0609 3.5324 0.1597 8 6 1.3610 4.6466 0.2862 9 6 2.0082 5.8626 0.4024 10 7 3.3294 5.9168 0.3869 11 6 4.0354 4.8091 0.2610 12 6 5.5410 4.8718 0.2429 13 7 6.0528 4.7499 1.6144 14 6 4.2495 0.0143 -0.0067 15 6 3.6201 -1.1977 -0.0006 16 6 2.2070 -1.2214 0.0005 17 6 1.5095 -2.4488 0.0006 18 1 0.4878 -2.4893 -0.3472 19 6 2.1416 -3.6123 0.4510 20 7 3.2439 -3.5290 1.1519 21 14 1.4127 -5.2854 0.0522 22 1 0.1731 -5.1078 -0.7461 23 1 2.3949 -6.0801 -0.7281 24 1 1.0901 -5.9985 1.3143 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 5.0911 2.4579 -0.0964 29 1 0.2818 4.6068 0.2986 30 1 1.4332 6.7710 0.5060 31 1 5.8600 5.8242 -0.1806 32 1 5.9314 4.0552 -0.3645 33 1 5.7173 3.9048 2.0517 34 1 7.0609 4.7887 1.6291 35 1 5.3282 0.0672 -0.0114 36 1 4.1886 -2.1160 -0.0009 37 1 3.6820 -4.3360 1.4646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160249998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:34 Heat of formation + Delta-G solvation = 97.536564 kcal Electronic energy + Delta-G solvation = -21757.567969 eV Core-core repulsion = 18535.161449 eV Total energy + Delta-G solvation = -3222.406520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.74692 -38.72894 -36.00049 -35.13963 -33.85206 -32.78387 -31.46659 -30.44650 -29.28241 -26.96580 -25.86614 -25.13723 -23.13353 -22.08177 -21.09635 -20.65553 -17.79062 -17.49148 -17.12090 -16.47060 -15.57156 -15.44178 -15.15484 -14.79466 -14.35112 -14.14795 -13.99862 -13.75346 -13.18445 -12.63522 -12.55527 -12.11584 -12.03067 -11.95260 -11.73932 -11.51891 -11.27307 -10.94051 -10.84475 -10.71815 -10.59780 -10.06649 -9.85318 -9.41050 -8.82916 -8.64010 -8.31755 -8.16787 -7.76450 -7.02785 -6.79154 -4.39788 1.25091 1.73630 2.59323 2.88939 2.98942 3.04009 3.18479 3.45471 3.80814 4.14725 4.38571 4.54616 4.69053 4.83493 4.86084 5.19416 5.36551 5.54404 5.56121 5.74354 5.75520 5.88492 6.17454 6.40110 6.43301 6.62937 6.68635 6.76697 6.91261 6.95830 7.02722 7.20642 7.29878 7.31878 7.38837 7.70935 7.83823 8.02432 8.05940 8.38807 8.52012 8.64985 8.69422 9.67412 10.00194 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.028491 B = 0.004243 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.516092 B = 6598.029920 C = 7425.343710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.023 3.977 3 N -0.434 5.434 4 C 0.207 3.793 5 N -0.624 5.624 6 C 0.356 3.644 7 N -0.424 5.424 8 C 0.094 3.906 9 C -0.036 4.036 10 N -0.396 5.396 11 C 0.005 3.995 12 C 0.127 3.873 13 N -0.841 5.841 14 C -0.175 4.175 15 C -0.114 4.114 16 C 0.050 3.950 17 C -0.438 4.438 18 H 0.086 0.914 19 C 0.071 3.929 20 N -0.793 5.793 21 Si 0.912 3.088 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.273 1.273 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.411 0.589 29 H 0.161 0.839 30 H 0.157 0.843 31 H 0.090 0.910 32 H 0.035 0.965 33 H 0.343 0.657 34 H 0.343 0.657 35 H 0.096 0.904 36 H 0.136 0.864 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.439 7.966 -1.500 8.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 N -0.145 5.145 4 C -0.022 4.022 5 N -0.250 5.250 6 C 0.116 3.884 7 N -0.144 5.144 8 C -0.070 4.070 9 C -0.198 4.198 10 N -0.110 5.110 11 C -0.145 4.145 12 C -0.005 4.005 13 N -0.372 5.372 14 C -0.198 4.198 15 C -0.140 4.140 16 C 0.045 3.955 17 C -0.467 4.467 18 H 0.104 0.896 19 C -0.147 4.147 20 N -0.418 5.418 21 Si 0.736 3.264 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.199 1.199 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.249 0.751 29 H 0.178 0.822 30 H 0.174 0.826 31 H 0.108 0.892 32 H 0.053 0.947 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.114 0.886 36 H 0.154 0.846 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.682 9.108 -1.236 9.344 hybrid contribution 1.137 -2.440 -0.435 2.727 sum 2.819 6.668 -1.671 7.430 Atomic orbital electron populations 1.20210 0.90985 1.01069 1.00217 1.20894 0.95110 0.87243 1.08735 1.66697 1.06241 1.29547 1.12065 1.17623 0.89502 0.83004 1.12056 1.41652 1.07870 1.01567 1.73893 1.19291 0.89997 0.86523 0.92551 1.68838 1.04298 1.28467 1.12802 1.23729 1.01410 0.88368 0.93508 1.23249 0.90947 0.99139 1.06449 1.67916 1.07533 1.29328 1.06205 1.21205 0.96499 0.88488 1.08274 1.20319 0.88659 1.01572 0.89958 1.58620 1.14471 1.46065 1.18076 1.20722 0.97923 0.92654 1.08504 1.21357 0.94928 0.96220 1.01498 1.18364 0.92377 0.93322 0.91478 1.19585 1.00039 0.91336 1.35776 0.89619 1.25994 0.94428 1.01808 0.92446 1.69807 1.16165 1.31331 1.24496 0.86192 0.80249 0.80723 0.79259 1.18178 1.19670 1.19862 0.93495 0.91678 0.93052 0.75124 0.82197 0.82552 0.89176 0.94704 0.84469 0.84342 0.88614 0.84648 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 9.58 36.01 0.34 -1.06 16 2 C 0.02 0.56 6.86 -81.79 -0.56 0.00 16 3 N -0.43 -10.43 7.58 -8.02 -0.06 -10.50 16 4 C 0.21 4.63 7.43 -155.02 -1.15 3.47 16 5 N -0.62 -11.39 5.41 -11.40 -0.06 -11.45 16 6 C 0.36 6.56 7.42 -154.62 -1.15 5.42 16 7 N -0.42 -8.34 7.85 -12.21 -0.10 -8.44 16 8 C 0.09 1.48 11.22 -17.40 -0.20 1.28 16 9 C -0.04 -0.52 11.21 -17.37 -0.19 -0.72 16 10 N -0.40 -6.43 10.41 -9.11 -0.09 -6.52 16 11 C 0.01 0.09 6.32 -82.15 -0.52 -0.43 16 12 C 0.13 1.59 6.71 -4.98 -0.03 1.55 16 13 N -0.84 -9.84 9.61 -11.41 -0.11 -9.95 16 14 C -0.17 -3.86 9.85 -39.64 -0.39 -4.25 16 15 C -0.11 -2.80 8.76 -39.01 -0.34 -3.14 16 16 C 0.05 1.26 5.62 -106.65 -0.60 0.66 16 17 C -0.44 -10.80 8.24 -37.86 -0.31 -11.12 16 18 H 0.09 2.02 6.72 -52.48 -0.35 1.67 16 19 C 0.07 1.67 5.23 -17.34 -0.09 1.57 16 20 N -0.79 -19.15 10.70 55.54 0.59 -18.56 16 21 Si 0.91 17.54 29.59 -169.99 -5.03 12.51 16 22 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 1.32 6.70 -51.92 -0.35 0.98 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.41 6.07 6.64 -40.82 -0.27 5.80 16 29 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 30 H 0.16 1.71 8.06 -52.48 -0.42 1.28 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.04 0.38 6.47 -51.93 -0.34 0.05 16 33 H 0.34 4.23 8.98 -39.29 -0.35 3.87 16 34 H 0.34 3.01 9.08 -39.29 -0.36 2.66 16 35 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 36 H 0.14 3.38 5.98 -52.49 -0.31 3.06 16 37 H 0.28 6.18 8.30 -40.82 -0.34 5.84 16 LS Contribution 314.39 15.07 4.74 4.74 Total: -1.00 -29.81 314.39 -9.31 -39.12 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -4.00 Total: 15.82 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -5.19 Total: -6.76 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: 0.17 Total: -65.42 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.81 -9.31 -39.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160249998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.658 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds