Wall clock time and date at job start Tue Mar 31 2020 05:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31453 * 119.81209 * 2 1 4 4 C 1.32755 * 121.73178 * 180.02562 * 3 2 1 5 5 N 1.38469 * 119.42887 * 180.02562 * 4 3 2 6 6 C 1.39084 * 120.00397 * 6.56696 * 5 4 3 7 7 N 1.32711 * 120.08794 * 354.41804 * 6 5 4 8 8 C 1.32185 * 119.91356 * 180.27983 * 7 6 5 9 9 C 1.38249 * 120.10290 * 359.73325 * 8 7 6 10 10 N 1.32242 * 120.18588 * 0.02562 * 9 8 7 11 11 C 1.31958 * 120.08153 * 359.97438 * 10 9 8 12 12 C 1.50701 * 120.04819 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47521 * 89.99689 * 12 11 10 14 14 C 1.39697 * 121.14451 * 0.27217 * 4 3 2 15 15 C 1.36569 * 119.49082 * 359.42815 * 14 4 3 16 16 C 1.40781 * 119.81932 * 179.97438 * 2 1 3 17 17 C 1.41176 * 120.57209 * 0.02562 * 16 2 1 18 18 H 1.08003 * 119.99768 * 21.79824 * 17 16 2 19 19 C 1.39862 * 119.99961 * 201.80408 * 17 16 2 20 20 N 1.30900 * 120.00338 * 15.85288 * 19 17 16 21 21 Si 1.86804 * 119.99897 * 195.85224 * 19 17 16 22 22 H 1.48500 * 109.47214 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47319 * 119.99893 * 21 19 17 24 24 H 1.48505 * 109.47275 * 239.99710 * 21 19 17 25 25 H 1.09000 * 109.47204 * 90.00450 * 1 2 3 26 26 H 1.09007 * 109.46900 * 209.99759 * 1 2 3 27 27 H 1.08998 * 109.47497 * 329.99629 * 1 2 3 28 28 H 0.97002 * 119.99875 * 186.56574 * 5 4 3 29 29 H 1.08002 * 119.94742 * 179.71754 * 8 7 6 30 30 H 1.08004 * 119.90972 * 180.02562 * 9 8 7 31 31 H 1.09003 * 109.47245 * 329.99447 * 12 11 10 32 32 H 1.09006 * 109.47055 * 209.99978 * 12 11 10 33 33 H 1.00899 * 110.99626 * 56.04201 * 13 12 11 34 34 H 1.00897 * 111.00377 * 179.97438 * 13 12 11 35 35 H 1.08000 * 120.25788 * 179.73198 * 14 4 3 36 36 H 1.08000 * 120.79565 * 180.26394 * 15 14 4 37 37 H 0.96999 * 119.99805 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1605 1.1406 0.0000 4 6 3.4873 1.1850 -0.0005 5 7 4.1269 2.4132 0.0001 6 6 3.3869 3.5826 0.1389 7 7 2.0609 3.5324 0.1597 8 6 1.3610 4.6466 0.2862 9 6 2.0082 5.8626 0.4024 10 7 3.3294 5.9168 0.3869 11 6 4.0354 4.8091 0.2610 12 6 5.5410 4.8718 0.2429 13 7 6.0528 4.7499 1.6144 14 6 4.2495 0.0143 -0.0067 15 6 3.6201 -1.1977 -0.0006 16 6 2.2070 -1.2214 0.0005 17 6 1.5095 -2.4488 0.0006 18 1 0.4878 -2.4893 -0.3472 19 6 2.1416 -3.6123 0.4510 20 7 3.2439 -3.5290 1.1519 21 14 1.4127 -5.2854 0.0522 22 1 0.1731 -5.1078 -0.7461 23 1 2.3949 -6.0801 -0.7281 24 1 1.0901 -5.9985 1.3143 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 5.0911 2.4579 -0.0964 29 1 0.2818 4.6068 0.2986 30 1 1.4332 6.7710 0.5060 31 1 5.8600 5.8242 -0.1806 32 1 5.9314 4.0552 -0.3645 33 1 5.7173 3.9048 2.0517 34 1 7.0609 4.7887 1.6291 35 1 5.3282 0.0672 -0.0114 36 1 4.1886 -2.1160 -0.0009 37 1 3.6820 -4.3360 1.4646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160249998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:33 Heat of formation + Delta-G solvation = 77.920493 kcal Electronic energy + Delta-G solvation = -21758.418585 eV Core-core repulsion = 18535.161449 eV Total energy + Delta-G solvation = -3223.257137 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.04441 -40.42628 -37.45591 -36.29315 -35.52229 -34.11772 -33.06754 -32.11127 -30.66952 -28.69746 -27.02118 -26.72338 -24.64099 -23.28502 -22.75685 -22.30676 -19.30735 -19.07655 -18.64159 -17.53666 -17.11043 -16.91413 -16.40475 -16.18837 -15.78157 -15.52866 -15.30207 -15.11647 -14.73148 -14.32194 -13.70523 -13.64611 -13.55261 -13.45797 -13.21895 -13.11953 -12.84155 -12.57019 -12.34891 -12.17029 -12.07281 -11.58844 -11.49491 -11.08881 -10.14440 -10.03361 -9.79065 -9.64107 -9.37835 -8.70392 -8.44909 -6.21118 -0.00808 0.41770 0.90255 1.15847 1.41780 1.54952 1.57459 2.08389 2.21627 2.74949 2.97897 3.28863 3.54436 3.59404 3.75490 3.82027 4.00067 4.21826 4.32829 4.44776 4.52757 4.61275 4.66707 4.77073 4.82130 5.01982 5.04887 5.17175 5.27679 5.39718 5.55463 5.62982 5.83171 5.93292 6.04127 6.24519 6.33253 6.51615 6.61390 6.74913 6.85639 6.90818 7.23019 7.91743 8.29944 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.028491 B = 0.004243 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.516092 B = 6598.029920 C = 7425.343710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.000 4.000 3 N -0.449 5.449 4 C 0.213 3.787 5 N -0.621 5.621 6 C 0.331 3.669 7 N -0.466 5.466 8 C 0.081 3.919 9 C -0.019 4.019 10 N -0.413 5.413 11 C 0.012 3.988 12 C 0.128 3.872 13 N -0.846 5.846 14 C -0.179 4.179 15 C -0.133 4.133 16 C 0.018 3.982 17 C -0.467 4.467 18 H 0.087 0.913 19 C 0.034 3.966 20 N -0.824 5.824 21 Si 0.982 3.018 22 H -0.256 1.256 23 H -0.266 1.266 24 H -0.268 1.268 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.425 0.575 29 H 0.187 0.813 30 H 0.197 0.803 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.339 0.661 34 H 0.360 0.640 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.588 9.208 -1.632 9.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.141 4.141 3 N -0.161 5.161 4 C -0.018 4.018 5 N -0.250 5.250 6 C 0.093 3.907 7 N -0.187 5.187 8 C -0.081 4.081 9 C -0.180 4.180 10 N -0.127 5.127 11 C -0.136 4.136 12 C -0.004 4.004 13 N -0.379 5.379 14 C -0.202 4.202 15 C -0.159 4.159 16 C 0.013 3.987 17 C -0.497 4.497 18 H 0.105 0.895 19 C -0.181 4.181 20 N -0.450 5.450 21 Si 0.803 3.197 22 H -0.179 1.179 23 H -0.191 1.191 24 H -0.193 1.193 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.265 0.735 29 H 0.204 0.796 30 H 0.213 0.787 31 H 0.117 0.883 32 H 0.070 0.930 33 H 0.151 0.849 34 H 0.176 0.824 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.854 10.409 -1.367 10.661 hybrid contribution 1.112 -2.525 -0.365 2.783 sum 2.965 7.884 -1.732 8.600 Atomic orbital electron populations 1.20155 0.89224 1.01249 1.00912 1.21398 0.96664 0.87294 1.08785 1.66846 1.07130 1.29278 1.12861 1.17978 0.89338 0.84612 1.09841 1.41460 1.08434 1.00368 1.74724 1.19501 0.90069 0.87108 0.94009 1.68697 1.05422 1.30828 1.13711 1.24215 1.02651 0.87946 0.93322 1.23896 0.90707 1.00163 1.03269 1.68072 1.08383 1.29205 1.07046 1.21634 0.98148 0.87494 1.06365 1.20384 0.86488 1.02748 0.90746 1.58577 1.15910 1.45879 1.17519 1.20971 0.99576 0.91900 1.07714 1.21395 0.94985 0.96817 1.02726 1.18697 0.93108 0.94183 0.92690 1.19779 1.00470 0.92131 1.37339 0.89516 1.26774 0.94682 1.04954 0.91712 1.69852 1.17348 1.32600 1.25231 0.85138 0.79447 0.76041 0.79043 1.17908 1.19093 1.19329 0.92449 0.91724 0.92439 0.73467 0.79593 0.78652 0.88290 0.93028 0.84912 0.82399 0.85496 0.85701 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.45 9.58 71.24 0.68 -1.77 16 2 C 0.00 0.02 6.86 43.24 0.30 0.31 16 3 N -0.45 -21.79 7.58 -179.29 -1.36 -23.15 16 4 C 0.21 9.51 7.43 133.28 0.99 10.50 16 5 N -0.62 -22.13 5.41 -189.98 -1.03 -23.16 16 6 C 0.33 11.87 7.42 132.98 0.99 12.86 16 7 N -0.47 -17.96 7.85 -192.56 -1.51 -19.48 16 8 C 0.08 2.41 11.22 84.64 0.95 3.36 16 9 C -0.02 -0.50 11.21 84.63 0.95 0.45 16 10 N -0.41 -12.39 10.41 -182.74 -1.90 -14.29 16 11 C 0.01 0.38 6.32 42.79 0.27 0.65 16 12 C 0.13 2.91 6.71 85.56 0.57 3.48 16 13 N -0.85 -17.97 9.61 -190.00 -1.83 -19.80 16 14 C -0.18 -7.91 9.85 22.23 0.22 -7.70 16 15 C -0.13 -6.70 8.76 22.64 0.20 -6.50 16 16 C 0.02 0.95 5.62 -21.18 -0.12 0.83 16 17 C -0.47 -23.72 8.24 23.38 0.19 -23.53 16 18 H 0.09 4.20 6.72 -2.91 -0.02 4.18 16 19 C 0.03 1.60 5.23 85.22 0.45 2.04 16 20 N -0.82 -40.70 10.70 21.81 0.23 -40.46 16 21 Si 0.98 36.15 29.59 68.60 2.03 38.18 16 22 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 23 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 24 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 25 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.06 2.68 6.70 -2.38 -0.02 2.67 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.42 11.95 6.64 -92.71 -0.62 11.34 16 29 H 0.19 4.27 8.06 -2.91 -0.02 4.25 16 30 H 0.20 3.45 8.06 -2.91 -0.02 3.42 16 31 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 1.00 6.47 -2.38 -0.02 0.99 16 33 H 0.34 7.80 8.98 -89.69 -0.81 6.99 16 34 H 0.36 5.47 9.08 -89.70 -0.81 4.65 16 35 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 36 H 0.13 6.46 5.98 -2.91 -0.02 6.44 16 37 H 0.29 12.85 8.30 -92.71 -0.77 12.08 16 Total: -1.00 -65.25 314.39 0.19 -65.06 By element: Atomic # 1 Polarization: 43.19 SS G_CDS: -1.08 Total: 42.11 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 6.64 Total: -5.01 kcal Atomic # 7 Polarization: -132.94 SS G_CDS: -7.39 Total: -140.34 kcal Atomic # 14 Polarization: 36.15 SS G_CDS: 2.03 Total: 38.18 kcal Total: -65.25 0.19 -65.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160249998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.981 kcal (2) G-P(sol) polarization free energy of solvation -65.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds