Wall clock time and date at job start Tue Mar 31 2020 05:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38710 * 119.27534 * 2 1 4 4 C 1.37984 * 119.62512 * 180.23321 * 3 2 1 5 5 C 1.41023 * 118.27862 * 359.49482 * 4 3 2 6 6 C 1.41005 * 120.70784 * 180.22776 * 5 4 3 7 7 H 1.08002 * 119.99894 * 154.87772 * 6 5 4 8 8 C 1.39941 * 119.99916 * 334.88780 * 6 5 4 9 9 N 1.30865 * 119.99966 * 343.96057 * 8 6 5 10 10 Si 1.86795 * 119.99924 * 163.96981 * 8 6 5 11 11 H 1.48500 * 109.47588 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47203 * 119.99613 * 10 8 6 13 13 H 1.48500 * 109.47062 * 239.99434 * 10 8 6 14 14 C 1.41690 * 118.59055 * 0.25667 * 5 4 3 15 15 N 1.38195 * 119.90751 * 180.02562 * 14 5 4 16 16 C 1.39104 * 120.00198 * 179.97438 * 15 14 5 17 17 N 1.32704 * 120.08660 * 0.02562 * 16 15 14 18 18 C 1.32178 * 119.91070 * 180.02562 * 17 16 15 19 19 C 1.38256 * 120.10635 * 0.02562 * 18 17 16 20 20 N 1.32236 * 120.18087 * 359.97438 * 19 18 17 21 21 C 1.31964 * 120.08828 * 359.67346 * 20 19 18 22 22 C 1.50694 * 120.05343 * 180.31738 * 21 20 19 23 23 N 1.46899 * 109.47268 * 270.30745 * 22 21 20 24 24 N 1.31942 * 119.27467 * 179.71934 * 2 1 3 25 25 H 1.08999 * 109.47018 * 270.27448 * 1 2 3 26 26 H 1.08994 * 109.47070 * 30.28297 * 1 2 3 27 27 H 1.09003 * 109.46371 * 150.27544 * 1 2 3 28 28 H 1.07993 * 120.19051 * 0.02562 * 3 2 1 29 29 H 1.08005 * 120.86330 * 179.77653 * 4 3 2 30 30 H 0.97003 * 119.99945 * 180.02562 * 9 8 6 31 31 H 0.97003 * 120.00391 * 0.02562 * 15 14 5 32 32 H 1.08007 * 119.94774 * 180.02562 * 18 17 16 33 33 H 1.08005 * 119.91129 * 179.97438 * 19 18 17 34 34 H 1.08998 * 109.47268 * 30.30899 * 22 21 20 35 35 H 1.09008 * 109.46790 * 150.31118 * 22 21 20 36 36 H 1.00898 * 111.00358 * 180.02562 * 23 22 21 37 37 H 1.00904 * 110.99912 * 303.95547 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2099 0.0000 4 6 3.5651 1.2184 -0.0049 5 6 4.2408 -0.0194 0.0012 6 6 5.6499 -0.0706 0.0014 7 1 6.1589 -0.9345 0.4028 8 6 6.3890 0.9982 -0.5182 9 7 5.8049 1.8895 -1.2777 10 14 8.2092 1.1523 -0.1278 11 1 8.6254 0.0255 0.7454 12 1 8.9909 1.1159 -1.3899 13 1 8.4582 2.4382 0.5719 14 6 3.4737 -1.2107 0.0064 15 7 4.1078 -2.4385 0.0130 16 6 3.3566 -3.6093 0.0187 17 7 2.0309 -3.5491 0.0173 18 6 1.3206 -4.6638 0.0233 19 6 1.9565 -5.8914 0.0314 20 7 3.2773 -5.9559 0.0328 21 6 3.9938 -4.8478 0.0199 22 6 5.4989 -4.9223 0.0143 23 7 5.9934 -4.9416 1.3974 24 7 2.1522 -1.1509 0.0056 25 1 -0.3633 0.0049 1.0276 26 1 -0.3633 0.8874 -0.5182 27 1 -0.3632 -0.8925 -0.5096 28 1 1.6367 2.1401 0.0004 29 1 4.1135 2.1488 -0.0086 30 1 6.3172 2.6302 -1.6382 31 1 5.0768 -2.4841 0.0144 32 1 0.2416 -4.6155 0.0217 33 1 1.3729 -6.8002 0.0367 34 1 5.8158 -5.8310 -0.4975 35 1 5.9037 -4.0531 -0.5042 36 1 7.0009 -4.9909 1.4206 37 1 5.6590 -4.1407 1.9122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160250762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:36 Heat of formation + Delta-G solvation = 93.866067 kcal Electronic energy + Delta-G solvation = -22146.354910 eV Core-core repulsion = 18923.789225 eV Total energy + Delta-G solvation = -3222.565685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.66956 -38.73651 -35.73907 -34.94185 -34.36892 -32.69354 -31.12807 -30.44171 -29.04932 -27.75260 -25.75466 -24.58843 -23.28969 -21.99685 -20.99268 -20.83086 -17.78927 -17.43735 -17.11621 -16.32522 -15.70715 -15.25044 -15.09099 -14.69435 -14.28005 -14.06255 -13.96780 -13.73227 -13.25658 -12.72623 -12.44898 -12.18617 -12.10123 -11.95216 -11.68929 -11.59611 -11.47887 -11.03140 -10.86427 -10.68584 -10.62854 -10.04924 -10.03113 -9.48685 -8.70792 -8.62068 -8.39897 -8.05905 -7.76158 -7.04957 -6.77818 -4.51962 1.32586 1.80266 2.54929 2.91183 2.93918 2.95153 3.08830 3.60452 3.72103 4.25060 4.45517 4.50699 4.79809 4.91407 4.97399 5.33493 5.47358 5.48794 5.62633 5.74258 5.84269 5.98274 6.08123 6.30033 6.42004 6.48072 6.54561 6.63929 6.83106 6.87434 7.01707 7.10049 7.37905 7.42815 7.47132 7.67553 7.77668 7.94839 8.13064 8.31757 8.50689 8.55109 8.68399 9.62470 9.94443 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.007016 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.179176 B = 3989.926032 C = 5892.635846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.018 3.982 3 C -0.165 4.165 4 C -0.122 4.122 5 C 0.052 3.948 6 C -0.461 4.461 7 H 0.074 0.926 8 C 0.077 3.923 9 N -0.788 5.788 10 Si 0.910 3.090 11 H -0.260 1.260 12 H -0.273 1.273 13 H -0.270 1.270 14 C 0.235 3.765 15 N -0.610 5.610 16 C 0.353 3.647 17 N -0.428 5.428 18 C 0.092 3.908 19 C -0.038 4.038 20 N -0.395 5.395 21 C 0.009 3.991 22 C 0.122 3.878 23 N -0.841 5.841 24 N -0.443 5.443 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.130 0.870 30 H 0.284 0.716 31 H 0.421 0.579 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.090 0.910 35 H 0.041 0.959 36 H 0.344 0.656 37 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.143 -5.833 1.540 6.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.120 4.120 3 C -0.187 4.187 4 C -0.148 4.148 5 C 0.045 3.955 6 C -0.491 4.491 7 H 0.092 0.908 8 C -0.141 4.141 9 N -0.413 5.413 10 Si 0.734 3.266 11 H -0.184 1.184 12 H -0.198 1.198 13 H -0.195 1.195 14 C 0.001 3.999 15 N -0.236 5.236 16 C 0.114 3.886 17 N -0.148 5.148 18 C -0.072 4.072 19 C -0.200 4.200 20 N -0.110 5.110 21 C -0.141 4.141 22 C -0.009 4.009 23 N -0.372 5.372 24 N -0.155 5.155 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.148 0.852 30 H 0.095 0.905 31 H 0.261 0.739 32 H 0.177 0.823 33 H 0.173 0.827 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.157 0.843 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.036 -6.910 1.453 7.349 hybrid contribution 2.088 1.899 -0.213 2.830 sum 0.052 -5.011 1.240 5.163 Atomic orbital electron populations 1.20261 0.91383 1.00898 1.00396 1.20217 0.94889 0.87788 1.09148 1.21448 0.95336 0.97138 1.04757 1.21421 0.92272 0.98105 1.02994 1.17923 0.93802 0.89969 0.93766 1.19181 0.90684 1.03279 1.35944 0.90821 1.25848 1.01265 0.94603 0.92431 1.69796 1.38722 1.10857 1.21925 0.86229 0.81479 0.79626 0.79298 1.18385 1.19802 1.19472 1.18300 0.88762 0.83955 1.08849 1.41690 1.07982 1.00832 1.73078 1.19378 0.89932 0.86719 0.92596 1.68802 1.04022 1.28935 1.13032 1.23682 1.01232 0.88453 0.93841 1.23220 0.91077 0.98890 1.06811 1.67919 1.07161 1.29784 1.06101 1.21211 0.96580 0.88040 1.08247 1.20364 0.88613 1.01567 0.90392 1.58674 1.15205 1.50076 1.13248 1.66710 1.07346 1.28439 1.13049 0.93203 0.93014 0.92342 0.88271 0.85246 0.90527 0.73883 0.82343 0.82661 0.89142 0.94155 0.84286 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.15 36.01 0.37 -0.93 16 2 C 0.02 0.41 6.79 -82.37 -0.56 -0.15 16 3 C -0.17 -3.73 9.70 -39.50 -0.38 -4.12 16 4 C -0.12 -2.98 8.79 -38.62 -0.34 -3.32 16 5 C 0.05 1.29 5.60 -106.48 -0.60 0.69 16 6 C -0.46 -10.90 8.52 -37.90 -0.32 -11.22 16 7 H 0.07 1.61 6.68 -52.49 -0.35 1.26 16 8 C 0.08 1.77 5.20 -17.33 -0.09 1.68 16 9 N -0.79 -18.82 10.93 55.55 0.61 -18.21 16 10 Si 0.91 16.99 29.59 -169.99 -5.03 11.96 16 11 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 12 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 13 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 14 C 0.23 5.65 7.48 -154.92 -1.16 4.49 16 15 N -0.61 -12.70 5.34 -11.06 -0.06 -12.76 16 16 C 0.35 7.03 7.43 -154.61 -1.15 5.89 16 17 N -0.43 -8.65 7.85 -12.21 -0.10 -8.75 16 18 C 0.09 1.48 11.22 -17.40 -0.20 1.29 16 19 C -0.04 -0.58 11.21 -17.37 -0.19 -0.77 16 20 N -0.40 -6.82 10.41 -9.11 -0.09 -6.91 16 21 C 0.01 0.17 6.32 -82.15 -0.52 -0.35 16 22 C 0.12 1.78 6.65 -4.98 -0.03 1.75 16 23 N -0.84 -11.28 9.61 -11.41 -0.11 -11.39 16 24 N -0.44 -10.61 7.58 -8.08 -0.06 -10.68 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.10 1.97 8.06 -52.49 -0.42 1.54 16 29 H 0.13 3.22 6.25 -52.48 -0.33 2.89 16 30 H 0.28 6.15 8.30 -40.82 -0.34 5.81 16 31 H 0.42 7.98 4.90 -40.82 -0.20 7.78 16 32 H 0.16 2.01 8.06 -52.48 -0.42 1.58 16 33 H 0.16 1.78 8.06 -52.48 -0.42 1.35 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.04 0.57 6.57 -51.92 -0.34 0.23 16 36 H 0.34 3.68 9.08 -39.29 -0.36 3.32 16 37 H 0.34 4.80 8.99 -39.29 -0.35 4.45 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -28.97 315.13 -9.29 -38.26 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -4.02 Total: 18.81 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -5.17 Total: -5.08 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: 0.19 Total: -68.70 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.97 -9.29 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160250762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.125 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds