Wall clock time and date at job start Tue Mar 31 2020 05:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38710 * 119.27534 * 2 1 4 4 C 1.37984 * 119.62512 * 180.23321 * 3 2 1 5 5 C 1.41023 * 118.27862 * 359.49482 * 4 3 2 6 6 C 1.41005 * 120.70784 * 180.22776 * 5 4 3 7 7 H 1.08002 * 119.99894 * 154.87772 * 6 5 4 8 8 C 1.39941 * 119.99916 * 334.88780 * 6 5 4 9 9 N 1.30865 * 119.99966 * 343.96057 * 8 6 5 10 10 Si 1.86795 * 119.99924 * 163.96981 * 8 6 5 11 11 H 1.48500 * 109.47588 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47203 * 119.99613 * 10 8 6 13 13 H 1.48500 * 109.47062 * 239.99434 * 10 8 6 14 14 C 1.41690 * 118.59055 * 0.25667 * 5 4 3 15 15 N 1.38195 * 119.90751 * 180.02562 * 14 5 4 16 16 C 1.39104 * 120.00198 * 179.97438 * 15 14 5 17 17 N 1.32704 * 120.08660 * 0.02562 * 16 15 14 18 18 C 1.32178 * 119.91070 * 180.02562 * 17 16 15 19 19 C 1.38256 * 120.10635 * 0.02562 * 18 17 16 20 20 N 1.32236 * 120.18087 * 359.97438 * 19 18 17 21 21 C 1.31964 * 120.08828 * 359.67346 * 20 19 18 22 22 C 1.50694 * 120.05343 * 180.31738 * 21 20 19 23 23 N 1.46899 * 109.47268 * 270.30745 * 22 21 20 24 24 N 1.31942 * 119.27467 * 179.71934 * 2 1 3 25 25 H 1.08999 * 109.47018 * 270.27448 * 1 2 3 26 26 H 1.08994 * 109.47070 * 30.28297 * 1 2 3 27 27 H 1.09003 * 109.46371 * 150.27544 * 1 2 3 28 28 H 1.07993 * 120.19051 * 0.02562 * 3 2 1 29 29 H 1.08005 * 120.86330 * 179.77653 * 4 3 2 30 30 H 0.97003 * 119.99945 * 180.02562 * 9 8 6 31 31 H 0.97003 * 120.00391 * 0.02562 * 15 14 5 32 32 H 1.08007 * 119.94774 * 180.02562 * 18 17 16 33 33 H 1.08005 * 119.91129 * 179.97438 * 19 18 17 34 34 H 1.08998 * 109.47268 * 30.30899 * 22 21 20 35 35 H 1.09008 * 109.46790 * 150.31118 * 22 21 20 36 36 H 1.00898 * 111.00358 * 180.02562 * 23 22 21 37 37 H 1.00904 * 110.99912 * 303.95547 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2099 0.0000 4 6 3.5651 1.2184 -0.0049 5 6 4.2408 -0.0194 0.0012 6 6 5.6499 -0.0706 0.0014 7 1 6.1589 -0.9345 0.4028 8 6 6.3890 0.9982 -0.5182 9 7 5.8049 1.8895 -1.2777 10 14 8.2092 1.1523 -0.1278 11 1 8.6254 0.0255 0.7454 12 1 8.9909 1.1159 -1.3899 13 1 8.4582 2.4382 0.5719 14 6 3.4737 -1.2107 0.0064 15 7 4.1078 -2.4385 0.0130 16 6 3.3566 -3.6093 0.0187 17 7 2.0309 -3.5491 0.0173 18 6 1.3206 -4.6638 0.0233 19 6 1.9565 -5.8914 0.0314 20 7 3.2773 -5.9559 0.0328 21 6 3.9938 -4.8478 0.0199 22 6 5.4989 -4.9223 0.0143 23 7 5.9934 -4.9416 1.3974 24 7 2.1522 -1.1509 0.0056 25 1 -0.3633 0.0049 1.0276 26 1 -0.3633 0.8874 -0.5182 27 1 -0.3632 -0.8925 -0.5096 28 1 1.6367 2.1401 0.0004 29 1 4.1135 2.1488 -0.0086 30 1 6.3172 2.6302 -1.6382 31 1 5.0768 -2.4841 0.0144 32 1 0.2416 -4.6155 0.0217 33 1 1.3729 -6.8002 0.0367 34 1 5.8158 -5.8310 -0.4975 35 1 5.9037 -4.0531 -0.5042 36 1 7.0009 -4.9909 1.4206 37 1 5.6590 -4.1407 1.9122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160250762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:35 Heat of formation + Delta-G solvation = 75.221679 kcal Electronic energy + Delta-G solvation = -22147.163391 eV Core-core repulsion = 18923.789225 eV Total energy + Delta-G solvation = -3223.374166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.04672 -40.41875 -37.20220 -36.21667 -36.07452 -34.06037 -32.75671 -32.03975 -30.49522 -29.40769 -26.98594 -26.19772 -24.82076 -23.31557 -22.65750 -22.45195 -19.32279 -19.10794 -18.62815 -17.50364 -17.30028 -16.71097 -16.45192 -16.06729 -15.74412 -15.63972 -15.31297 -15.10193 -14.74214 -14.34319 -13.88673 -13.67516 -13.55402 -13.29835 -13.24729 -13.09566 -12.94852 -12.58162 -12.36142 -12.14826 -12.10403 -11.73381 -11.47782 -11.17663 -10.15407 -10.07204 -9.78308 -9.66264 -9.37844 -8.73103 -8.41905 -6.29496 -0.01438 0.41445 0.88311 1.22374 1.38701 1.49003 1.52443 2.12322 2.16112 2.73514 2.95619 3.28730 3.54455 3.59212 3.71126 3.81171 4.00122 4.25050 4.33661 4.46973 4.47560 4.62711 4.68423 4.78650 4.80463 4.99205 5.03759 5.09603 5.17781 5.35837 5.46303 5.71294 5.75701 6.00383 6.01569 6.15042 6.25555 6.48466 6.57839 6.73582 6.78450 6.88466 7.22269 7.88434 8.27289 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.007016 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.179176 B = 3989.926032 C = 5892.635846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.005 3.995 3 C -0.174 4.174 4 C -0.145 4.145 5 C 0.021 3.979 6 C -0.482 4.482 7 H 0.083 0.917 8 C 0.038 3.962 9 N -0.823 5.823 10 Si 0.981 3.019 11 H -0.251 1.251 12 H -0.269 1.269 13 H -0.268 1.268 14 C 0.228 3.772 15 N -0.614 5.614 16 C 0.327 3.673 17 N -0.463 5.463 18 C 0.084 3.916 19 C -0.019 4.019 20 N -0.411 5.411 21 C 0.010 3.990 22 C 0.125 3.875 23 N -0.841 5.841 24 N -0.457 5.457 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.289 0.711 31 H 0.424 0.576 32 H 0.193 0.807 33 H 0.199 0.801 34 H 0.101 0.899 35 H 0.042 0.958 36 H 0.360 0.640 37 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.392 -7.410 1.849 7.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.133 4.133 3 C -0.196 4.196 4 C -0.171 4.171 5 C 0.014 3.986 6 C -0.512 4.512 7 H 0.101 0.899 8 C -0.178 4.178 9 N -0.449 5.449 10 Si 0.802 3.198 11 H -0.174 1.174 12 H -0.194 1.194 13 H -0.193 1.193 14 C -0.006 4.006 15 N -0.242 5.242 16 C 0.089 3.911 17 N -0.183 5.183 18 C -0.079 4.079 19 C -0.181 4.181 20 N -0.126 5.126 21 C -0.138 4.138 22 C -0.007 4.007 23 N -0.373 5.373 24 N -0.171 5.171 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.141 0.859 29 H 0.135 0.865 30 H 0.100 0.900 31 H 0.265 0.735 32 H 0.210 0.790 33 H 0.216 0.784 34 H 0.119 0.881 35 H 0.060 0.940 36 H 0.175 0.825 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.281 -8.530 1.766 9.005 hybrid contribution 1.984 2.218 -0.316 2.993 sum -0.297 -6.312 1.450 6.483 Atomic orbital electron populations 1.20284 0.88197 1.02010 1.01667 1.21009 0.97135 0.87466 1.07731 1.21701 0.94840 0.98448 1.04575 1.21454 0.93308 0.97757 1.04605 1.18259 0.94808 0.90559 0.94937 1.19449 0.90676 1.04366 1.36685 0.89861 1.26690 1.05528 0.93841 0.91691 1.69860 1.40601 1.11573 1.22836 0.85157 0.75883 0.79660 0.79116 1.17431 1.19394 1.19334 1.18603 0.89069 0.84995 1.07940 1.41554 1.08112 1.00344 1.74157 1.19570 0.90247 0.86973 0.94289 1.68682 1.04642 1.31337 1.13646 1.24284 1.02687 0.87848 0.93111 1.23945 0.90677 1.00203 1.03293 1.68056 1.08224 1.29377 1.06914 1.21506 0.97897 0.87281 1.07153 1.20375 0.87064 1.02112 0.91132 1.58652 1.16502 1.49765 1.12423 1.66887 1.07333 1.28995 1.13866 0.91727 0.90773 0.92292 0.85938 0.86542 0.89976 0.73513 0.79021 0.78404 0.88073 0.94044 0.82523 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.21 10.15 71.24 0.72 -1.48 16 2 C 0.00 0.22 6.79 42.66 0.29 0.51 16 3 C -0.17 -7.99 9.70 22.32 0.22 -7.77 16 4 C -0.14 -7.37 8.79 22.89 0.20 -7.16 16 5 C 0.02 1.08 5.60 -21.07 -0.12 0.96 16 6 C -0.48 -23.43 8.52 23.36 0.20 -23.23 16 7 H 0.08 3.72 6.68 -2.91 -0.02 3.70 16 8 C 0.04 1.77 5.20 85.25 0.44 2.21 16 9 N -0.82 -40.44 10.93 21.83 0.24 -40.20 16 10 Si 0.98 34.92 29.59 68.60 2.03 36.95 16 11 H -0.25 -8.47 7.11 99.48 0.71 -7.76 16 12 H -0.27 -9.33 7.11 99.48 0.71 -8.63 16 13 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 14 C 0.23 11.27 7.48 134.01 1.00 12.27 16 15 N -0.61 -26.10 5.34 -188.89 -1.01 -27.11 16 16 C 0.33 12.98 7.43 132.97 0.99 13.96 16 17 N -0.46 -18.40 7.85 -192.54 -1.51 -19.92 16 18 C 0.08 2.52 11.22 84.65 0.95 3.47 16 19 C -0.02 -0.52 11.21 84.64 0.95 0.43 16 20 N -0.41 -13.28 10.41 -182.74 -1.90 -15.18 16 21 C 0.01 0.34 6.32 42.79 0.27 0.61 16 22 C 0.12 3.52 6.65 85.56 0.57 4.09 16 23 N -0.84 -21.60 9.61 -190.01 -1.83 -23.43 16 24 N -0.46 -22.17 7.58 -179.49 -1.36 -23.53 16 25 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 29 H 0.12 6.09 6.25 -2.91 -0.02 6.08 16 30 H 0.29 12.87 8.30 -92.71 -0.77 12.10 16 31 H 0.42 16.50 4.90 -92.71 -0.45 16.05 16 32 H 0.19 4.24 8.06 -2.91 -0.02 4.21 16 33 H 0.20 3.58 8.06 -2.91 -0.02 3.55 16 34 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.04 1.16 6.57 -2.38 -0.02 1.14 16 36 H 0.36 7.16 9.08 -89.70 -0.81 6.35 16 37 H 0.34 9.32 8.99 -89.69 -0.81 8.51 16 Total: -1.00 -63.81 315.13 0.42 -63.39 By element: Atomic # 1 Polarization: 51.09 SS G_CDS: -0.92 Total: 50.17 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 6.68 Total: -1.14 kcal Atomic # 7 Polarization: -142.00 SS G_CDS: -7.37 Total: -149.37 kcal Atomic # 14 Polarization: 34.92 SS G_CDS: 2.03 Total: 36.95 kcal Total: -63.81 0.42 -63.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160250762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.615 kcal (2) G-P(sol) polarization free energy of solvation -63.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds