Wall clock time and date at job start Tue Mar 31 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50707 * 109.46914 * 2 1 4 4 N 1.31587 * 119.86511 * 89.99481 * 3 2 1 5 5 C 1.33182 * 120.08811 * 180.02562 * 4 3 2 6 6 C 1.43200 * 120.08705 * 179.97438 * 5 4 3 7 7 N 5.84458 * 105.78082 * 36.85247 * 2 1 3 8 8 C 1.40615 * 119.82288 * 0.02562 * 5 4 3 9 9 C 1.43195 * 120.13050 * 179.97438 * 8 5 4 10 10 N 6.76661 * 109.44433 * 359.33014 * 2 1 3 11 11 N 1.33004 * 119.74523 * 359.97438 * 8 5 4 12 12 C 1.32496 * 119.90517 * 359.97438 * 11 8 5 13 13 N 1.38594 * 119.91201 * 179.97438 * 12 11 8 14 14 C 1.46499 * 120.00262 * 0.02562 * 13 12 11 15 15 H 1.09005 * 109.46897 * 34.99253 * 14 13 12 16 16 C 1.50701 * 109.47640 * 154.99392 * 14 13 12 17 17 H 1.07997 * 119.99906 * 0.02562 * 16 14 13 18 18 C 1.37878 * 119.99913 * 179.97438 * 16 14 13 19 19 N 1.31509 * 120.00038 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99712 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47142 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47163 * 119.99788 * 20 18 16 23 23 H 1.48491 * 109.47158 * 240.00128 * 20 18 16 24 24 C 1.53002 * 109.46975 * 274.99818 * 14 13 12 25 25 C 1.53002 * 109.47060 * 64.99794 * 24 14 13 26 26 H 1.09005 * 109.46429 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47269 * 299.99499 * 1 2 3 28 28 H 1.09000 * 109.46880 * 60.00160 * 1 2 3 29 29 H 1.08994 * 109.47269 * 240.00500 * 2 1 3 30 30 H 1.08998 * 109.47607 * 119.99753 * 2 1 3 31 31 H 0.97005 * 120.00357 * 179.97438 * 13 12 11 32 32 H 0.97006 * 119.99447 * 180.02562 * 19 18 16 33 33 H 1.09005 * 109.47248 * 184.99712 * 24 14 13 34 34 H 1.09002 * 109.47102 * 304.99994 * 24 14 13 35 35 H 1.08999 * 109.46897 * 179.97438 * 25 24 14 36 36 H 1.09005 * 109.47023 * 300.00056 * 25 24 14 37 37 H 1.08996 * 109.47313 * 60.00456 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2506 2.0387 1.1411 5 6 2.6940 3.2945 1.1463 6 6 2.9311 3.9671 2.3882 7 7 3.1195 4.5005 3.3732 8 6 2.9278 3.9587 -0.0709 9 6 3.4040 5.3091 -0.0730 10 7 3.7826 6.3802 -0.0746 11 7 2.7048 3.3277 -1.2203 12 6 2.2647 2.0780 -1.2133 13 7 2.0318 1.4205 -2.4109 14 6 2.2729 2.1071 -3.6824 15 1 3.1318 2.7704 -3.5800 16 6 2.5498 1.0891 -4.7586 17 1 2.5462 0.0359 -4.5194 18 6 2.8067 1.5022 -6.0487 19 7 2.8106 2.7846 -6.3400 20 14 3.1493 0.2403 -7.3826 21 1 3.0864 -1.1246 -6.8008 22 1 2.1320 0.3671 -8.4570 23 1 4.5010 0.4749 -7.9506 24 6 1.0378 2.9269 -4.0615 25 6 0.8296 4.0405 -3.0332 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.7099 0.5054 -2.4073 32 1 2.9910 3.0752 -7.2477 33 1 1.1822 3.3661 -5.0486 34 1 0.1619 2.2782 -4.0770 35 1 -0.0499 4.6248 -3.3035 36 1 0.6853 3.6012 -2.0460 37 1 1.7054 4.6891 -3.0177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161055374.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:15 Heat of formation + Delta-G solvation = 110.983908 kcal Electronic energy + Delta-G solvation = -21947.993015 eV Core-core repulsion = 18726.169615 eV Total energy + Delta-G solvation = -3221.823399 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40626 -37.54723 -36.66471 -36.28306 -35.05060 -33.82992 -32.18383 -31.19947 -30.08812 -27.25028 -25.94761 -24.55211 -23.08283 -22.45636 -20.37514 -19.74847 -18.94945 -18.05169 -16.97066 -15.91881 -15.78031 -15.12634 -14.64440 -14.23084 -13.99297 -13.68617 -13.58585 -13.45364 -13.25602 -13.05903 -12.95866 -12.85364 -12.78225 -12.17187 -11.94175 -11.72653 -11.62266 -11.44460 -11.23718 -11.12085 -11.08542 -10.93157 -10.63355 -10.40036 -9.88558 -9.73828 -9.24063 -9.18401 -8.65397 -7.49595 -6.32574 -4.43806 0.19185 0.98862 2.32695 2.51549 2.73998 3.00415 3.10807 3.12756 3.21822 3.22802 3.54670 3.62721 3.93501 4.18563 4.23283 4.61021 4.77053 4.89021 5.00312 5.21133 5.23149 5.41570 5.79387 5.90242 5.95278 6.13892 6.15972 6.20795 6.37876 6.69188 6.78841 6.98139 7.07163 7.14260 7.25557 7.34898 7.42869 7.47688 7.61939 7.80296 7.92379 8.21809 8.61678 9.24081 10.72434 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018153 B = 0.005187 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.093987 B = 5396.414854 C = 6341.212244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.066 4.066 3 C 0.045 3.955 4 N -0.363 5.363 5 C 0.074 3.926 6 C 0.280 3.720 7 N -0.402 5.402 8 C 0.260 3.740 9 C 0.264 3.736 10 N -0.368 5.368 11 N -0.459 5.459 12 C 0.405 3.595 13 N -0.652 5.652 14 C 0.265 3.735 15 H 0.061 0.939 16 C -0.542 4.542 17 H 0.064 0.936 18 C 0.071 3.929 19 N -0.878 5.878 20 Si 0.902 3.098 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.127 4.127 25 C -0.138 4.138 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.409 0.591 32 H 0.267 0.733 33 H 0.104 0.896 34 H 0.035 0.965 35 H 0.028 0.972 36 H 0.030 0.970 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.180 -5.758 8.041 10.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 C -0.114 4.114 4 N -0.076 5.076 5 C -0.070 4.070 6 C -0.037 4.037 7 N -0.079 5.079 8 C 0.111 3.889 9 C -0.054 4.054 10 N -0.044 5.044 11 N -0.182 5.182 12 C 0.156 3.844 13 N -0.274 5.274 14 C 0.164 3.836 15 H 0.079 0.921 16 C -0.580 4.580 17 H 0.082 0.918 18 C -0.133 4.133 19 N -0.514 5.514 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.166 4.166 25 C -0.196 4.196 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.248 0.752 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.248 -3.091 9.078 10.125 hybrid contribution -0.159 -1.487 -1.299 1.981 sum -3.407 -4.578 7.778 9.647 Atomic orbital electron populations 1.21767 0.93765 1.02435 1.02765 1.20397 0.96718 0.89107 1.04242 1.21785 1.04031 0.98744 0.86857 1.67882 1.05621 1.05436 1.28653 1.16289 1.12091 0.92179 0.86434 1.24596 0.93699 0.93448 0.91910 1.81217 1.08952 1.08372 1.09389 1.16701 0.95418 0.87880 0.88927 1.24722 0.94671 0.91842 0.94197 1.81223 1.06357 1.10593 1.06270 1.68370 1.16544 1.08016 1.25294 1.19348 0.88470 0.88118 0.88493 1.45986 1.62160 1.15615 1.03678 1.19166 0.95144 0.92297 0.77022 0.92108 1.21164 1.50755 0.92857 0.93250 0.91768 1.24846 0.94466 0.95546 0.98455 1.69875 1.47322 1.13724 1.20512 0.86376 0.78109 0.81165 0.81395 1.19628 1.20772 1.20781 1.21965 0.97409 0.96021 1.01243 1.21876 0.99951 0.99348 0.98392 0.91581 0.92067 0.92166 0.89734 0.89081 0.75227 0.92328 0.87743 0.94652 0.95292 0.95118 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 37.16 0.37 -0.91 16 2 C -0.07 -0.62 5.79 -27.88 -0.16 -0.78 16 3 C 0.05 0.57 6.07 -82.06 -0.50 0.07 16 4 N -0.36 -4.86 10.33 -6.69 -0.07 -4.93 16 5 C 0.07 1.04 6.62 -84.46 -0.56 0.48 16 6 C 0.28 4.11 14.62 -22.48 -0.33 3.78 16 7 N -0.40 -6.36 18.54 41.83 0.78 -5.59 16 8 C 0.26 3.92 6.61 -84.54 -0.56 3.36 16 9 C 0.26 4.19 14.62 -22.47 -0.33 3.86 16 10 N -0.37 -6.25 18.54 41.84 0.78 -5.47 16 11 N -0.46 -7.55 6.48 -9.88 -0.06 -7.61 16 12 C 0.40 6.07 6.02 -155.04 -0.93 5.14 16 13 N -0.65 -10.40 5.04 -54.93 -0.28 -10.67 16 14 C 0.27 5.46 2.25 -69.08 -0.16 5.31 16 15 H 0.06 1.45 7.54 -51.93 -0.39 1.06 16 16 C -0.54 -12.32 8.73 -34.44 -0.30 -12.62 16 17 H 0.06 1.39 7.74 -52.49 -0.41 0.99 16 18 C 0.07 1.70 5.29 -17.82 -0.09 1.61 16 19 N -0.88 -22.16 11.29 55.43 0.63 -21.53 16 20 Si 0.90 18.74 29.54 -169.99 -5.02 13.72 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 C -0.13 -2.60 5.45 -26.73 -0.15 -2.75 16 25 C -0.14 -2.54 8.44 37.16 0.31 -2.23 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.71 6.54 -51.93 -0.34 0.37 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.41 5.55 6.50 -40.82 -0.27 5.29 16 32 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 33 H 0.10 2.46 5.95 -51.93 -0.31 2.15 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.03 0.52 5.59 -51.93 -0.29 0.23 16 37 H 0.05 1.09 7.67 -51.93 -0.40 0.69 16 LS Contribution 326.16 15.07 4.92 4.92 Total: -1.00 -25.36 326.16 -5.79 -31.15 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.07 Total: 1.71 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -3.38 Total: 4.31 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 1.77 Total: -55.81 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -25.36 -5.79 -31.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055374.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.135 kcal (2) G-P(sol) polarization free energy of solvation -25.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds