Wall clock time and date at job start Tue Mar 31 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50707 * 109.46914 * 2 1 4 4 N 1.31587 * 119.86511 * 89.99481 * 3 2 1 5 5 C 1.33182 * 120.08811 * 180.02562 * 4 3 2 6 6 C 1.43200 * 120.08705 * 179.97438 * 5 4 3 7 7 N 5.84458 * 105.78082 * 36.85247 * 2 1 3 8 8 C 1.40615 * 119.82288 * 0.02562 * 5 4 3 9 9 C 1.43195 * 120.13050 * 179.97438 * 8 5 4 10 10 N 6.76661 * 109.44433 * 359.33014 * 2 1 3 11 11 N 1.33004 * 119.74523 * 359.97438 * 8 5 4 12 12 C 1.32496 * 119.90517 * 359.97438 * 11 8 5 13 13 N 1.38594 * 119.91201 * 179.97438 * 12 11 8 14 14 C 1.46499 * 120.00262 * 0.02562 * 13 12 11 15 15 H 1.09005 * 109.46897 * 34.99253 * 14 13 12 16 16 C 1.50701 * 109.47640 * 154.99392 * 14 13 12 17 17 H 1.07997 * 119.99906 * 0.02562 * 16 14 13 18 18 C 1.37878 * 119.99913 * 179.97438 * 16 14 13 19 19 N 1.31509 * 120.00038 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99712 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47142 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47163 * 119.99788 * 20 18 16 23 23 H 1.48491 * 109.47158 * 240.00128 * 20 18 16 24 24 C 1.53002 * 109.46975 * 274.99818 * 14 13 12 25 25 C 1.53002 * 109.47060 * 64.99794 * 24 14 13 26 26 H 1.09005 * 109.46429 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47269 * 299.99499 * 1 2 3 28 28 H 1.09000 * 109.46880 * 60.00160 * 1 2 3 29 29 H 1.08994 * 109.47269 * 240.00500 * 2 1 3 30 30 H 1.08998 * 109.47607 * 119.99753 * 2 1 3 31 31 H 0.97005 * 120.00357 * 179.97438 * 13 12 11 32 32 H 0.97006 * 119.99447 * 180.02562 * 19 18 16 33 33 H 1.09005 * 109.47248 * 184.99712 * 24 14 13 34 34 H 1.09002 * 109.47102 * 304.99994 * 24 14 13 35 35 H 1.08999 * 109.46897 * 179.97438 * 25 24 14 36 36 H 1.09005 * 109.47023 * 300.00056 * 25 24 14 37 37 H 1.08996 * 109.47313 * 60.00456 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2506 2.0387 1.1411 5 6 2.6940 3.2945 1.1463 6 6 2.9311 3.9671 2.3882 7 7 3.1195 4.5005 3.3732 8 6 2.9278 3.9587 -0.0709 9 6 3.4040 5.3091 -0.0730 10 7 3.7826 6.3802 -0.0746 11 7 2.7048 3.3277 -1.2203 12 6 2.2647 2.0780 -1.2133 13 7 2.0318 1.4205 -2.4109 14 6 2.2729 2.1071 -3.6824 15 1 3.1318 2.7704 -3.5800 16 6 2.5498 1.0891 -4.7586 17 1 2.5462 0.0359 -4.5194 18 6 2.8067 1.5022 -6.0487 19 7 2.8106 2.7846 -6.3400 20 14 3.1493 0.2403 -7.3826 21 1 3.0864 -1.1246 -6.8008 22 1 2.1320 0.3671 -8.4570 23 1 4.5010 0.4749 -7.9506 24 6 1.0378 2.9269 -4.0615 25 6 0.8296 4.0405 -3.0332 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.7099 0.5054 -2.4073 32 1 2.9910 3.0752 -7.2477 33 1 1.1822 3.3661 -5.0486 34 1 0.1619 2.2782 -4.0770 35 1 -0.0499 4.6248 -3.3035 36 1 0.6853 3.6012 -2.0460 37 1 1.7054 4.6891 -3.0177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161055374.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:14 Heat of formation + Delta-G solvation = 97.648150 kcal Electronic energy + Delta-G solvation = -21948.571297 eV Core-core repulsion = 18726.169615 eV Total energy + Delta-G solvation = -3222.401681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.59759 -38.86749 -37.96890 -37.58816 -36.13213 -35.28926 -33.60313 -32.52257 -31.31074 -28.85277 -27.00213 -25.92887 -24.58771 -23.42111 -21.82950 -21.08416 -20.12038 -19.33650 -18.46468 -17.32689 -17.03496 -16.74762 -15.70287 -15.60555 -15.18176 -14.82788 -14.79869 -14.70257 -14.56101 -14.40401 -14.30326 -14.11601 -13.98470 -13.55460 -13.16218 -13.14780 -12.85639 -12.79881 -12.71168 -12.40951 -12.26898 -12.08248 -12.03580 -11.81572 -11.50838 -11.15078 -10.83251 -10.49963 -10.33073 -8.77717 -8.12180 -6.27664 -1.00568 -0.18384 1.06312 1.30772 1.48076 1.52050 1.52996 1.60849 1.76884 1.90644 2.27687 2.36366 2.52543 2.74902 3.14325 3.20075 3.42368 3.65495 3.82765 4.36551 4.50871 4.53033 4.58937 4.61479 4.80892 5.03181 5.11662 5.17898 5.25329 5.30618 5.45723 5.53167 5.61521 5.67008 5.73518 5.88462 5.98547 6.10522 6.21975 6.24072 6.45967 6.75039 7.04576 7.43816 8.92246 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018153 B = 0.005187 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.093987 B = 5396.414854 C = 6341.212244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 C 0.074 3.926 4 N -0.365 5.365 5 C 0.091 3.909 6 C 0.292 3.708 7 N -0.418 5.418 8 C 0.251 3.749 9 C 0.275 3.725 10 N -0.392 5.392 11 N -0.486 5.486 12 C 0.399 3.601 13 N -0.651 5.651 14 C 0.278 3.722 15 H 0.024 0.976 16 C -0.544 4.544 17 H 0.076 0.924 18 C 0.023 3.977 19 N -0.911 5.911 20 Si 0.959 3.041 21 H -0.258 1.258 22 H -0.285 1.285 23 H -0.290 1.290 24 C -0.121 4.121 25 C -0.124 4.124 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.422 0.578 32 H 0.263 0.737 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.038 0.962 36 H 0.043 0.957 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.013 -8.086 9.146 13.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.086 4.086 4 N -0.078 5.078 5 C -0.051 4.051 6 C -0.025 4.025 7 N -0.096 5.096 8 C 0.105 3.895 9 C -0.043 4.043 10 N -0.069 5.069 11 N -0.210 5.210 12 C 0.150 3.850 13 N -0.277 5.277 14 C 0.174 3.826 15 H 0.041 0.959 16 C -0.582 4.582 17 H 0.094 0.906 18 C -0.178 4.178 19 N -0.549 5.549 20 Si 0.785 3.215 21 H -0.182 1.182 22 H -0.211 1.211 23 H -0.217 1.217 24 C -0.160 4.160 25 C -0.182 4.182 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.263 0.737 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.080 -5.418 10.247 12.288 hybrid contribution 0.095 -0.801 -1.551 1.748 sum -3.985 -6.219 8.696 11.409 Atomic orbital electron populations 1.21761 0.92762 1.03796 1.02128 1.20629 0.97363 0.86709 1.05895 1.22313 1.01118 0.99755 0.85413 1.68044 1.06153 1.04923 1.28631 1.16217 1.10874 0.92324 0.85721 1.24567 0.93210 0.92982 0.91694 1.81236 1.09409 1.08876 1.10077 1.16561 0.96517 0.87530 0.88941 1.24882 0.94019 0.91931 0.93493 1.81223 1.07361 1.11331 1.07016 1.68263 1.17372 1.09164 1.26207 1.19514 0.88676 0.87866 0.88924 1.45503 1.63618 1.16102 1.02508 1.18641 0.93770 0.91562 0.78583 0.95856 1.21572 1.49218 0.93836 0.93615 0.90591 1.25582 0.94788 0.96797 1.00631 1.70024 1.48934 1.15406 1.20544 0.85484 0.77111 0.79854 0.79009 1.18168 1.21113 1.21673 1.21800 0.97619 0.96580 1.00046 1.21718 0.99512 0.98503 0.98460 0.89301 0.92448 0.93074 0.88283 0.87234 0.73653 0.92803 0.91074 0.93917 0.94278 0.93803 0.94431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.89 71.98 0.71 -1.26 16 2 C -0.07 -1.00 5.79 29.85 0.17 -0.83 16 3 C 0.07 1.66 6.07 43.01 0.26 1.92 16 4 N -0.36 -8.83 10.33 -175.07 -1.81 -10.63 16 5 C 0.09 2.42 6.62 40.77 0.27 2.69 16 6 C 0.29 8.15 14.62 88.33 1.29 9.44 16 7 N -0.42 -12.76 18.54 19.00 0.35 -12.41 16 8 C 0.25 7.41 6.61 40.79 0.27 7.68 16 9 C 0.27 8.72 14.62 88.33 1.29 10.02 16 10 N -0.39 -13.46 18.54 19.00 0.35 -13.10 16 11 N -0.49 -15.75 6.48 -185.18 -1.20 -16.95 16 12 C 0.40 11.32 6.02 133.37 0.80 12.13 16 13 N -0.65 -19.78 5.04 -327.69 -1.65 -21.44 16 14 C 0.28 11.44 2.25 44.25 0.10 11.54 16 15 H 0.02 1.15 7.54 -2.38 -0.02 1.13 16 16 C -0.54 -24.39 8.73 25.60 0.22 -24.17 16 17 H 0.08 3.15 7.74 -2.91 -0.02 3.12 16 18 C 0.02 1.09 5.29 84.66 0.45 1.54 16 19 N -0.91 -47.16 11.29 21.45 0.24 -46.92 16 20 Si 0.96 38.21 29.54 68.60 2.03 40.24 16 21 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 22 H -0.29 -11.40 7.11 99.48 0.71 -10.70 16 23 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 24 C -0.12 -4.98 5.45 30.60 0.17 -4.81 16 25 C -0.12 -4.56 8.44 71.98 0.61 -3.95 16 26 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 1.26 6.54 -2.39 -0.02 1.24 16 30 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.42 10.39 6.50 -92.70 -0.60 9.78 16 32 H 0.26 13.15 8.31 -92.70 -0.77 12.38 16 33 H 0.07 3.44 5.95 -2.38 -0.01 3.43 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.04 1.46 5.59 -2.38 -0.01 1.45 16 37 H 0.04 1.49 7.67 -2.39 -0.02 1.47 16 Total: -1.00 -54.83 326.16 5.46 -49.37 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.53 Total: 9.91 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 6.62 Total: 21.93 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -3.71 Total: -121.45 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -54.83 5.46 -49.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055374.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.022 kcal (2) G-P(sol) polarization free energy of solvation -54.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds