Wall clock time and date at job start Tue Mar 31 2020 05:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31421 * 119.82658 * 2 1 4 4 C 1.32683 * 121.75547 * 180.02562 * 3 2 1 5 5 N 1.38943 * 119.41687 * 180.02562 * 4 3 2 6 6 C 1.36540 * 120.17189 * 131.54334 * 5 4 3 7 7 C 1.35642 * 119.22325 * 179.97438 * 6 5 4 8 8 C 1.50702 * 120.21554 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47473 * 89.99560 * 8 7 6 10 10 C 1.40148 * 119.57079 * 359.97438 * 7 6 5 11 11 N 1.31370 * 120.32407 * 0.02562 * 10 7 6 12 12 C 1.34345 * 120.80356 * 359.73866 * 11 10 7 13 13 N 1.31362 * 119.78899 * 180.26206 * 12 11 10 14 14 C 1.39562 * 121.16924 * 0.04352 * 4 3 2 15 15 C 1.36641 * 119.49907 * 359.97438 * 14 4 3 16 16 C 1.40826 * 119.82050 * 180.02562 * 2 1 3 17 17 C 1.41160 * 120.58303 * 0.25128 * 16 2 1 18 18 H 1.07997 * 119.99845 * 334.54888 * 17 16 2 19 19 C 1.39927 * 120.00068 * 154.55331 * 17 16 2 20 20 N 1.30847 * 120.00279 * 344.09414 * 19 17 16 21 21 Si 1.86804 * 119.99822 * 164.09340 * 19 17 16 22 22 H 1.48495 * 109.47259 * 90.00284 * 21 19 17 23 23 H 1.48508 * 109.46936 * 209.99830 * 21 19 17 24 24 H 1.48495 * 109.47410 * 329.99485 * 21 19 17 25 25 H 1.09000 * 109.46947 * 269.95624 * 1 2 3 26 26 H 1.08996 * 109.46619 * 29.95248 * 1 2 3 27 27 H 1.08999 * 109.47269 * 149.95425 * 1 2 3 28 28 H 1.07991 * 120.38546 * 359.94621 * 6 5 4 29 29 H 1.09003 * 109.46884 * 210.00149 * 8 7 6 30 30 H 1.09001 * 109.46762 * 329.99567 * 8 7 6 31 31 H 1.00893 * 110.99683 * 179.97438 * 9 8 7 32 32 H 1.00900 * 110.99954 * 303.95558 * 9 8 7 33 33 H 1.07993 * 119.84276 * 180.02562 * 10 7 6 34 34 H 0.97001 * 120.00060 * 0.25349 * 13 12 11 35 35 H 1.08006 * 120.25126 * 179.97438 * 14 4 3 36 36 H 1.08000 * 120.80471 * 180.02562 * 15 14 4 37 37 H 0.96999 * 120.00657 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1401 0.0000 4 6 3.4867 1.1848 -0.0005 5 7 4.1280 2.4173 0.0001 6 6 5.1396 2.6642 0.8833 7 6 5.7527 3.8740 0.8667 8 6 6.8721 4.1703 1.8312 9 7 8.1546 3.7882 1.2253 10 6 5.3392 4.8464 -0.0540 11 7 4.3639 4.5903 -0.8961 12 6 3.7501 3.3953 -0.8950 13 7 2.7806 3.1589 -1.7493 14 6 4.2488 0.0156 -0.0020 15 6 3.6200 -1.1975 -0.0024 16 6 2.2073 -1.2218 -0.0005 17 6 1.5101 -2.4492 -0.0064 18 1 0.5076 -2.5027 0.3916 19 6 2.1180 -3.5966 -0.5278 20 7 3.1821 -3.4883 -1.2815 21 14 1.4104 -5.2832 -0.1478 22 1 0.4094 -5.6448 -1.1834 23 1 2.5031 -6.2889 -0.1431 24 1 0.7563 -5.2568 1.1851 25 1 -0.3633 -0.0008 1.0277 26 1 -0.3632 0.8904 -0.5131 27 1 -0.3634 -0.8896 -0.5145 28 1 5.4476 1.9053 1.5871 29 1 6.8816 5.2359 2.0605 30 1 6.7205 3.6024 2.7492 31 1 8.9216 3.9776 1.8529 32 1 8.1475 2.8191 0.9446 33 1 5.8245 5.8110 -0.0713 34 1 2.5125 3.8447 -2.3807 35 1 5.3276 0.0693 -0.0028 36 1 4.1890 -2.1154 -0.0031 37 1 3.6034 -4.2837 -1.6432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161418069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:16 Heat of formation + Delta-G solvation = 104.193529 kcal Electronic energy + Delta-G solvation = -21722.205860 eV Core-core repulsion = 18500.088007 eV Total energy + Delta-G solvation = -3222.117852 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.82503 -38.54538 -35.80749 -34.99139 -33.90109 -32.86319 -31.48612 -30.57498 -29.25271 -27.10603 -25.84255 -24.56531 -23.91978 -22.45228 -20.88538 -20.55842 -17.81825 -17.66811 -17.14137 -16.53411 -15.79906 -15.71599 -15.10876 -14.69258 -14.26582 -14.01510 -13.87196 -13.41515 -13.11748 -13.09788 -12.75032 -12.25481 -11.89678 -11.79481 -11.72875 -11.48715 -11.36359 -10.96533 -10.84635 -10.57221 -10.19588 -10.03209 -9.76675 -9.51846 -8.86598 -8.78768 -8.45321 -8.16399 -7.78795 -7.14358 -6.88259 -4.65556 1.08730 2.11908 2.36261 2.79390 2.90550 2.93280 2.98501 3.03299 3.68935 4.16441 4.36731 4.64042 4.72234 4.76451 4.96920 5.09326 5.32196 5.37845 5.64854 5.76203 6.00254 6.04776 6.20894 6.28188 6.39694 6.54237 6.59392 6.68701 6.78176 6.85921 6.99082 7.03224 7.11426 7.20722 7.32648 7.56244 7.69184 7.82472 8.20159 8.33347 8.43534 8.50335 9.07555 9.48652 9.82389 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.024025 B = 0.004377 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.187021 B = 6395.415821 C = 7127.418120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.025 3.975 3 N -0.419 5.419 4 C 0.159 3.841 5 N -0.404 5.404 6 C 0.214 3.786 7 C -0.298 4.298 8 C 0.135 3.865 9 N -0.850 5.850 10 C 0.250 3.750 11 N -0.563 5.563 12 C 0.520 3.480 13 N -0.720 5.720 14 C -0.136 4.136 15 C -0.128 4.128 16 C 0.072 3.928 17 C -0.429 4.429 18 H 0.091 0.909 19 C 0.072 3.928 20 N -0.777 5.777 21 Si 0.915 3.085 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.257 1.257 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.162 0.838 29 H 0.080 0.920 30 H 0.032 0.968 31 H 0.338 0.662 32 H 0.341 0.659 33 H 0.158 0.842 34 H 0.340 0.660 35 H 0.099 0.901 36 H 0.133 0.867 37 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.106 5.197 6.927 11.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.122 4.122 3 N -0.128 5.128 4 C -0.065 4.065 5 N -0.094 5.094 6 C 0.072 3.928 7 C -0.312 4.312 8 C 0.003 3.997 9 N -0.381 5.381 10 C 0.058 3.942 11 N -0.284 5.284 12 C 0.152 3.848 13 N -0.353 5.353 14 C -0.159 4.159 15 C -0.153 4.153 16 C 0.067 3.933 17 C -0.457 4.457 18 H 0.109 0.891 19 C -0.149 4.149 20 N -0.401 5.401 21 Si 0.739 3.261 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.181 1.181 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.179 0.821 29 H 0.099 0.901 30 H 0.050 0.950 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.175 0.825 34 H 0.157 0.843 35 H 0.117 0.883 36 H 0.150 0.850 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.364 5.881 5.204 9.510 hybrid contribution 1.105 -1.809 1.095 2.386 sum 6.469 4.071 6.298 9.904 Atomic orbital electron populations 1.20257 0.90648 1.01570 1.00344 1.20829 0.95116 0.86872 1.09349 1.66146 1.07393 1.30949 1.08349 1.17136 0.88956 0.81462 1.18986 1.41436 1.28148 1.12822 1.26995 1.22234 0.85510 0.96355 0.88655 1.19637 1.07125 0.95760 1.08670 1.20191 0.86282 1.00850 0.92340 1.58782 1.04322 1.27697 1.47258 1.23122 0.87831 0.97541 0.85711 1.69946 1.13254 1.18430 1.26729 1.20118 0.92419 0.81978 0.90325 1.70157 1.16007 1.37439 1.11705 1.20929 0.98043 0.92552 1.04348 1.21226 0.94807 0.95985 1.03305 1.18423 0.92402 0.93305 0.89145 1.19678 1.01631 0.91878 1.32555 0.89142 1.26092 0.94222 1.02138 0.92446 1.69791 1.16864 1.32670 1.20763 0.86170 0.79622 0.79843 0.80479 1.19048 1.19825 1.18060 0.93320 0.92851 0.91286 0.82076 0.90121 0.95030 0.84905 0.84649 0.82521 0.84328 0.88279 0.84959 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 9.58 36.01 0.35 -1.15 16 2 C 0.02 0.61 6.86 -81.79 -0.56 0.05 16 3 N -0.42 -10.59 9.19 -7.95 -0.07 -10.67 16 4 C 0.16 3.72 6.22 -154.68 -0.96 2.76 16 5 N -0.40 -8.31 2.86 -63.67 -0.18 -8.49 16 6 C 0.21 3.31 9.53 -16.38 -0.16 3.16 16 7 C -0.30 -3.90 5.37 -104.83 -0.56 -4.46 16 8 C 0.13 1.24 6.92 -4.98 -0.03 1.21 16 9 N -0.85 -7.46 9.61 -11.41 -0.11 -7.57 16 10 C 0.25 3.61 10.96 -17.03 -0.19 3.42 16 11 N -0.56 -10.56 10.47 -13.70 -0.14 -10.70 16 12 C 0.52 11.32 8.34 -322.62 -2.69 8.63 16 13 N -0.72 -17.10 12.59 29.78 0.37 -16.72 16 14 C -0.14 -3.04 9.29 -39.67 -0.37 -3.40 16 15 C -0.13 -3.08 8.73 -39.00 -0.34 -3.42 16 16 C 0.07 1.81 5.58 -106.65 -0.60 1.21 16 17 C -0.43 -10.23 8.14 -37.84 -0.31 -10.54 16 18 H 0.09 2.03 6.86 -52.49 -0.36 1.67 16 19 C 0.07 1.62 5.20 -17.34 -0.09 1.53 16 20 N -0.78 -18.33 10.92 55.55 0.61 -17.73 16 21 Si 0.92 16.77 29.59 -169.99 -5.03 11.74 16 22 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 23 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 24 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.07 1.40 6.76 -51.93 -0.35 1.05 16 28 H 0.16 2.05 7.85 -52.49 -0.41 1.64 16 29 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 30 H 0.03 0.26 8.08 -51.93 -0.42 -0.16 16 31 H 0.34 2.19 9.08 -39.30 -0.36 1.83 16 32 H 0.34 3.02 8.99 -39.29 -0.35 2.66 16 33 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.34 7.43 8.90 -40.82 -0.36 7.07 16 35 H 0.10 1.91 7.86 -52.48 -0.41 1.49 16 36 H 0.13 3.18 6.25 -52.49 -0.33 2.85 16 37 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -30.52 318.62 -10.44 -40.96 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -4.18 Total: 15.36 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -6.51 Total: -1.00 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: 0.47 Total: -71.87 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.52 -10.44 -40.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161418069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.156 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds