Wall clock time and date at job start Tue Mar 31 2020 05:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31421 * 119.82658 * 2 1 4 4 C 1.32683 * 121.75547 * 180.02562 * 3 2 1 5 5 N 1.38943 * 119.41687 * 180.02562 * 4 3 2 6 6 C 1.36540 * 120.17189 * 131.54334 * 5 4 3 7 7 C 1.35642 * 119.22325 * 179.97438 * 6 5 4 8 8 C 1.50702 * 120.21554 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47473 * 89.99560 * 8 7 6 10 10 C 1.40148 * 119.57079 * 359.97438 * 7 6 5 11 11 N 1.31370 * 120.32407 * 0.02562 * 10 7 6 12 12 C 1.34345 * 120.80356 * 359.73866 * 11 10 7 13 13 N 1.31362 * 119.78899 * 180.26206 * 12 11 10 14 14 C 1.39562 * 121.16924 * 0.04352 * 4 3 2 15 15 C 1.36641 * 119.49907 * 359.97438 * 14 4 3 16 16 C 1.40826 * 119.82050 * 180.02562 * 2 1 3 17 17 C 1.41160 * 120.58303 * 0.25128 * 16 2 1 18 18 H 1.07997 * 119.99845 * 334.54888 * 17 16 2 19 19 C 1.39927 * 120.00068 * 154.55331 * 17 16 2 20 20 N 1.30847 * 120.00279 * 344.09414 * 19 17 16 21 21 Si 1.86804 * 119.99822 * 164.09340 * 19 17 16 22 22 H 1.48495 * 109.47259 * 90.00284 * 21 19 17 23 23 H 1.48508 * 109.46936 * 209.99830 * 21 19 17 24 24 H 1.48495 * 109.47410 * 329.99485 * 21 19 17 25 25 H 1.09000 * 109.46947 * 269.95624 * 1 2 3 26 26 H 1.08996 * 109.46619 * 29.95248 * 1 2 3 27 27 H 1.08999 * 109.47269 * 149.95425 * 1 2 3 28 28 H 1.07991 * 120.38546 * 359.94621 * 6 5 4 29 29 H 1.09003 * 109.46884 * 210.00149 * 8 7 6 30 30 H 1.09001 * 109.46762 * 329.99567 * 8 7 6 31 31 H 1.00893 * 110.99683 * 179.97438 * 9 8 7 32 32 H 1.00900 * 110.99954 * 303.95558 * 9 8 7 33 33 H 1.07993 * 119.84276 * 180.02562 * 10 7 6 34 34 H 0.97001 * 120.00060 * 0.25349 * 13 12 11 35 35 H 1.08006 * 120.25126 * 179.97438 * 14 4 3 36 36 H 1.08000 * 120.80471 * 180.02562 * 15 14 4 37 37 H 0.96999 * 120.00657 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1401 0.0000 4 6 3.4867 1.1848 -0.0005 5 7 4.1280 2.4173 0.0001 6 6 5.1396 2.6642 0.8833 7 6 5.7527 3.8740 0.8667 8 6 6.8721 4.1703 1.8312 9 7 8.1546 3.7882 1.2253 10 6 5.3392 4.8464 -0.0540 11 7 4.3639 4.5903 -0.8961 12 6 3.7501 3.3953 -0.8950 13 7 2.7806 3.1589 -1.7493 14 6 4.2488 0.0156 -0.0020 15 6 3.6200 -1.1975 -0.0024 16 6 2.2073 -1.2218 -0.0005 17 6 1.5101 -2.4492 -0.0064 18 1 0.5076 -2.5027 0.3916 19 6 2.1180 -3.5966 -0.5278 20 7 3.1821 -3.4883 -1.2815 21 14 1.4104 -5.2832 -0.1478 22 1 0.4094 -5.6448 -1.1834 23 1 2.5031 -6.2889 -0.1431 24 1 0.7563 -5.2568 1.1851 25 1 -0.3633 -0.0008 1.0277 26 1 -0.3632 0.8904 -0.5131 27 1 -0.3634 -0.8896 -0.5145 28 1 5.4476 1.9053 1.5871 29 1 6.8816 5.2359 2.0605 30 1 6.7205 3.6024 2.7492 31 1 8.9216 3.9776 1.8529 32 1 8.1475 2.8191 0.9446 33 1 5.8245 5.8110 -0.0713 34 1 2.5125 3.8447 -2.3807 35 1 5.3276 0.0693 -0.0028 36 1 4.1890 -2.1154 -0.0031 37 1 3.6034 -4.2837 -1.6432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161418069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:14 Heat of formation + Delta-G solvation = 85.069512 kcal Electronic energy + Delta-G solvation = -21723.035139 eV Core-core repulsion = 18500.088007 eV Total energy + Delta-G solvation = -3222.947132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.27398 -40.23933 -37.04917 -36.38189 -35.56150 -34.09339 -33.20626 -32.31374 -30.52293 -28.84644 -27.37066 -25.95681 -25.11340 -23.98939 -22.34746 -22.30138 -19.39812 -19.18968 -18.67026 -17.86376 -17.39405 -16.85014 -16.57164 -15.93611 -15.63957 -15.54092 -15.06250 -14.82708 -14.56355 -14.46343 -14.03719 -13.80757 -13.62302 -13.40327 -13.19114 -12.88733 -12.70291 -12.65317 -12.32951 -12.09807 -11.74866 -11.53797 -11.28256 -11.01718 -10.46898 -10.26822 -9.93350 -9.55808 -9.43421 -8.81085 -8.46177 -6.45551 -0.21965 0.63768 0.82434 1.02076 1.40751 1.47294 1.54199 1.57234 2.16687 2.58183 2.82554 3.43542 3.50434 3.59394 3.79287 3.99931 4.03308 4.13087 4.32116 4.48179 4.53200 4.61043 4.80411 4.91514 4.92344 4.96093 5.03238 5.09332 5.19523 5.24317 5.42143 5.46667 5.57076 5.80670 5.91155 6.16114 6.33163 6.43317 6.67103 6.70988 6.74262 6.93643 7.49038 7.72699 8.15990 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.024025 B = 0.004377 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.187021 B = 6395.415821 C = 7127.418120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.003 4.003 3 N -0.445 5.445 4 C 0.157 3.843 5 N -0.420 5.420 6 C 0.192 3.808 7 C -0.267 4.267 8 C 0.138 3.862 9 N -0.858 5.858 10 C 0.255 3.745 11 N -0.588 5.588 12 C 0.518 3.482 13 N -0.776 5.776 14 C -0.135 4.135 15 C -0.144 4.144 16 C 0.047 3.953 17 C -0.453 4.453 18 H 0.097 0.903 19 C 0.036 3.964 20 N -0.810 5.810 21 Si 0.989 3.011 22 H -0.263 1.263 23 H -0.266 1.266 24 H -0.252 1.252 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.188 0.812 29 H 0.103 0.897 30 H 0.050 0.950 31 H 0.355 0.645 32 H 0.341 0.659 33 H 0.201 0.799 34 H 0.339 0.661 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.972 5.547 8.614 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.148 4.148 3 N -0.155 5.155 4 C -0.068 4.068 5 N -0.113 5.113 6 C 0.055 3.945 7 C -0.279 4.279 8 C 0.006 3.994 9 N -0.390 5.390 10 C 0.066 3.934 11 N -0.310 5.310 12 C 0.150 3.850 13 N -0.413 5.413 14 C -0.157 4.157 15 C -0.169 4.169 16 C 0.042 3.958 17 C -0.481 4.481 18 H 0.115 0.885 19 C -0.182 4.182 20 N -0.434 5.434 21 Si 0.809 3.191 22 H -0.188 1.188 23 H -0.190 1.190 24 H -0.175 1.175 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.205 0.795 29 H 0.121 0.879 30 H 0.068 0.932 31 H 0.169 0.831 32 H 0.153 0.847 33 H 0.218 0.782 34 H 0.155 0.845 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.305 6.273 6.953 11.877 hybrid contribution 0.749 -1.690 0.638 1.956 sum 8.054 4.582 7.592 11.979 Atomic orbital electron populations 1.20222 0.88971 1.01406 1.01370 1.21331 0.96625 0.86963 1.09902 1.66228 1.08671 1.31319 1.09233 1.17459 0.88724 0.83006 1.17646 1.41510 1.29482 1.11853 1.28413 1.22864 0.84582 0.98300 0.88797 1.20161 1.06427 0.93951 1.07382 1.20288 0.84936 1.02591 0.91537 1.58726 1.04535 1.27806 1.47906 1.23972 0.85964 0.99389 0.84026 1.70000 1.15177 1.17018 1.28799 1.20367 0.91978 0.82933 0.89737 1.70151 1.18805 1.38425 1.13894 1.21135 0.99450 0.91744 1.03376 1.21287 0.94818 0.96482 1.04313 1.18742 0.93132 0.93999 0.89966 1.19945 1.02259 0.92409 1.33488 0.88506 1.26936 0.94278 1.05474 0.91510 1.69832 1.18037 1.34154 1.21361 0.85079 0.78905 0.74885 0.80256 1.18785 1.18982 1.17541 0.91612 0.93314 0.90942 0.79530 0.87917 0.93230 0.83061 0.84694 0.78222 0.84479 0.85401 0.85443 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.70 9.58 71.24 0.68 -2.02 16 2 C 0.00 -0.15 6.86 43.25 0.30 0.15 16 3 N -0.45 -23.19 9.19 -179.06 -1.65 -24.84 16 4 C 0.16 7.47 6.22 133.10 0.83 8.30 16 5 N -0.42 -17.19 2.86 -355.37 -1.02 -18.21 16 6 C 0.19 5.55 9.53 83.36 0.79 6.35 16 7 C -0.27 -6.05 5.37 -20.00 -0.11 -6.16 16 8 C 0.14 1.87 6.92 85.56 0.59 2.47 16 9 N -0.86 -11.40 9.61 -190.00 -1.83 -13.23 16 10 C 0.25 6.58 10.96 85.23 0.93 7.52 16 11 N -0.59 -21.49 10.47 -197.26 -2.06 -23.56 16 12 C 0.52 22.79 8.34 261.42 2.18 24.97 16 13 N -0.78 -38.41 12.59 -59.68 -0.75 -39.16 16 14 C -0.13 -6.06 9.29 22.22 0.21 -5.86 16 15 C -0.14 -7.08 8.73 22.65 0.20 -6.88 16 16 C 0.05 2.40 5.58 -21.18 -0.12 2.28 16 17 C -0.45 -22.01 8.14 23.40 0.19 -21.82 16 18 H 0.10 4.40 6.86 -2.91 -0.02 4.38 16 19 C 0.04 1.62 5.20 85.25 0.44 2.06 16 20 N -0.81 -38.66 10.92 21.82 0.24 -38.43 16 21 Si 0.99 33.96 29.59 68.60 2.03 35.99 16 22 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 23 H -0.27 -8.69 7.11 99.48 0.71 -7.98 16 24 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 25 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.07 3.02 6.76 -2.39 -0.02 3.00 16 28 H 0.19 4.25 7.85 -2.92 -0.02 4.23 16 29 H 0.10 1.05 8.10 -2.39 -0.02 1.03 16 30 H 0.05 0.56 8.08 -2.39 -0.02 0.54 16 31 H 0.35 3.07 9.08 -89.70 -0.81 2.25 16 32 H 0.34 4.78 8.99 -89.69 -0.81 3.98 16 33 H 0.20 3.37 8.06 -2.91 -0.02 3.34 16 34 H 0.34 15.68 8.90 -92.71 -0.82 14.85 16 35 H 0.13 4.82 7.86 -2.91 -0.02 4.79 16 36 H 0.13 6.29 6.25 -2.91 -0.02 6.27 16 37 H 0.30 12.64 8.30 -92.71 -0.77 11.87 16 Total: -1.00 -69.54 318.62 0.79 -68.75 By element: Atomic # 1 Polarization: 42.62 SS G_CDS: -1.29 Total: 41.33 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 7.12 Total: 11.35 kcal Atomic # 7 Polarization: -150.35 SS G_CDS: -7.07 Total: -157.42 kcal Atomic # 14 Polarization: 33.96 SS G_CDS: 2.03 Total: 35.99 kcal Total: -69.54 0.79 -68.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161418069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.818 kcal (2) G-P(sol) polarization free energy of solvation -69.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds