Wall clock time and date at job start Tue Mar 31 2020 05:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38759 * 119.28136 * 2 1 4 4 C 1.37935 * 119.59819 * 180.02562 * 3 2 1 5 5 C 1.41083 * 118.26671 * 359.97438 * 4 3 2 6 6 C 1.41023 * 120.70502 * 179.97438 * 5 4 3 7 7 H 1.08001 * 120.00160 * 208.46589 * 6 5 4 8 8 C 1.39989 * 119.99727 * 28.46536 * 6 5 4 9 9 N 1.30830 * 119.99933 * 198.04819 * 8 6 5 10 10 Si 1.86801 * 119.99939 * 18.05326 * 8 6 5 11 11 H 1.48499 * 109.46987 * 264.83715 * 10 8 6 12 12 H 1.48501 * 109.47279 * 24.83560 * 10 8 6 13 13 H 1.48493 * 109.47185 * 144.83696 * 10 8 6 14 14 C 1.41569 * 118.59695 * 0.27704 * 5 4 3 15 15 N 1.38721 * 119.89776 * 179.70229 * 14 5 4 16 16 C 1.36552 * 120.17187 * 51.90525 * 15 14 5 17 17 C 1.35631 * 119.22702 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.22313 * 180.02562 * 17 16 15 19 19 N 1.46903 * 109.46898 * 90.00095 * 18 17 16 20 20 C 1.40161 * 119.56738 * 0.02562 * 17 16 15 21 21 N 1.31358 * 120.32887 * 359.97438 * 20 17 16 22 22 C 1.34346 * 120.80972 * 359.71325 * 21 20 17 23 23 N 1.31355 * 119.79380 * 180.28242 * 22 21 20 24 24 N 1.31896 * 119.27791 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47326 * 89.99618 * 1 2 3 26 26 H 1.09000 * 109.47257 * 209.99962 * 1 2 3 27 27 H 1.09000 * 109.46803 * 329.99721 * 1 2 3 28 28 H 1.07995 * 120.19870 * 0.04861 * 3 2 1 29 29 H 1.07997 * 120.86635 * 179.97438 * 4 3 2 30 30 H 0.97001 * 120.00084 * 180.02562 * 9 8 6 31 31 H 1.08003 * 120.39105 * 359.97438 * 16 15 14 32 32 H 1.08997 * 109.47598 * 209.99929 * 18 17 16 33 33 H 1.08999 * 109.46928 * 330.00338 * 18 17 16 34 34 H 1.00899 * 111.00137 * 56.04955 * 19 18 17 35 35 H 1.00894 * 110.99966 * 180.02562 * 19 18 17 36 36 H 1.08001 * 119.83578 * 180.02562 * 20 17 16 37 37 H 0.96996 * 120.00303 * 5.34826 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.2103 0.0000 4 6 3.5650 1.2179 -0.0005 5 6 4.2400 -0.0210 -0.0005 6 6 5.6492 -0.0732 -0.0016 7 1 6.1581 -0.9150 -0.4474 8 6 6.3886 0.9663 0.5752 9 7 7.6546 1.1112 0.2789 10 14 5.5675 2.1462 1.7681 11 1 5.1143 3.3555 1.0351 12 1 4.3978 1.4809 2.3963 13 1 6.5374 2.5401 2.8212 14 6 3.4727 -1.2107 -0.0060 15 7 4.1086 -2.4435 -0.0123 16 6 5.0710 -2.7242 0.9149 17 6 5.6807 -3.9355 0.8907 18 6 6.7454 -4.2692 1.9037 19 7 6.1227 -4.8821 3.0846 20 6 5.3141 -4.8750 -0.0826 21 7 4.3860 -4.5868 -0.9664 22 6 3.7685 -3.3938 -0.9517 23 7 2.8393 -3.1287 -1.8415 24 7 2.1520 -1.1505 -0.0005 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6372 2.1406 0.0008 29 1 4.1139 2.1480 -0.0010 30 1 8.1670 1.8312 0.6788 31 1 5.3441 -1.9899 1.6583 32 1 7.4582 -4.9675 1.4652 33 1 7.2646 -3.3573 2.1988 34 1 5.5814 -5.6939 2.8277 35 1 6.8164 -5.1149 3.7793 36 1 5.7965 -5.8410 -0.1056 37 1 2.5460 -3.8189 -2.4567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161418208.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:18 Heat of formation + Delta-G solvation = 105.224474 kcal Electronic energy + Delta-G solvation = -22442.141248 eV Core-core repulsion = 19220.068101 eV Total energy + Delta-G solvation = -3222.073147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.77085 -38.67935 -35.58449 -34.83258 -34.20008 -32.73631 -31.85489 -30.67809 -29.07154 -28.14676 -25.36904 -24.09763 -23.76641 -22.73742 -21.18871 -20.71242 -17.84317 -17.52265 -17.24654 -16.37753 -15.95546 -15.76966 -15.09056 -14.56838 -14.09053 -13.94884 -13.82633 -13.57525 -13.36920 -13.20590 -12.58832 -12.38998 -12.21057 -12.01229 -11.80224 -11.65597 -11.50850 -11.02933 -10.67951 -10.53954 -10.18985 -10.00720 -9.69803 -9.53952 -8.82800 -8.61320 -8.59995 -8.32395 -7.96581 -7.31310 -6.85434 -4.84925 1.26398 2.15568 2.30188 2.46080 2.86022 2.97482 3.05932 3.11616 3.67244 4.19974 4.31212 4.79058 4.86095 4.99989 5.08428 5.25832 5.32579 5.40583 5.72109 5.77632 5.85475 5.98274 6.01922 6.25127 6.26946 6.31428 6.38610 6.45850 6.57514 6.67723 6.81223 6.95539 7.18774 7.20220 7.28691 7.48064 7.52943 7.67643 7.91913 8.20122 8.33074 8.44056 9.09459 9.29274 9.68413 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.008587 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.330114 B = 3259.898853 C = 4757.859913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.008 3.992 3 C -0.114 4.114 4 C -0.196 4.196 5 C 0.057 3.943 6 C -0.436 4.436 7 H 0.096 0.904 8 C 0.086 3.914 9 N -0.782 5.782 10 Si 0.909 3.091 11 H -0.265 1.265 12 H -0.242 1.242 13 H -0.283 1.283 14 C 0.204 3.796 15 N -0.405 5.405 16 C 0.265 3.735 17 C -0.309 4.309 18 C 0.135 3.865 19 N -0.850 5.850 20 C 0.243 3.757 21 N -0.568 5.568 22 C 0.529 3.471 23 N -0.737 5.737 24 N -0.416 5.416 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.292 0.708 31 H 0.173 0.827 32 H 0.035 0.965 33 H 0.080 0.920 34 H 0.338 0.662 35 H 0.338 0.662 36 H 0.153 0.847 37 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.136 -4.524 5.865 7.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.132 4.132 3 C -0.134 4.134 4 C -0.222 4.222 5 C 0.050 3.950 6 C -0.464 4.464 7 H 0.114 0.886 8 C -0.137 4.137 9 N -0.404 5.404 10 Si 0.734 3.266 11 H -0.191 1.191 12 H -0.165 1.165 13 H -0.210 1.210 14 C -0.026 4.026 15 N -0.096 5.096 16 C 0.125 3.875 17 C -0.322 4.322 18 C 0.004 3.996 19 N -0.380 5.380 20 C 0.052 3.948 21 N -0.289 5.289 22 C 0.161 3.839 23 N -0.372 5.372 24 N -0.125 5.125 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.103 0.897 31 H 0.191 0.809 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.170 0.830 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.599 -3.932 4.837 6.436 hybrid contribution 1.591 0.134 0.400 1.646 sum -0.007 -3.798 5.238 6.470 Atomic orbital electron populations 1.20297 0.90620 1.01165 1.01069 1.20133 0.95132 0.87155 1.10791 1.21472 0.94599 0.97839 0.99482 1.21204 0.93836 0.96789 1.10390 1.18211 0.94304 0.90368 0.92161 1.19392 0.89183 1.06385 1.31465 0.88628 1.26205 0.94758 0.96648 0.96042 1.69667 1.08799 1.28139 1.33809 0.86332 0.80115 0.80293 0.79833 1.19100 1.16525 1.21011 1.17699 0.87910 0.82375 1.14664 1.41145 1.31338 1.12880 1.24198 1.22319 0.82738 0.95323 0.87141 1.19593 1.10132 0.96266 1.06182 1.20178 0.92117 0.99250 0.88094 1.58777 1.29819 1.35950 1.13416 1.23130 0.88210 0.97066 0.86376 1.69892 1.13853 1.17812 1.27329 1.20124 0.92436 0.81938 0.89384 1.70064 1.18442 1.36994 1.11674 1.66167 1.08658 1.29996 1.07670 0.92576 0.92270 0.92568 0.87077 0.86591 0.89718 0.80949 0.94730 0.90116 0.84947 0.85000 0.82990 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.27 10.15 36.01 0.37 -0.91 16 2 C 0.01 0.18 6.79 -82.37 -0.56 -0.38 16 3 C -0.11 -2.37 9.70 -39.50 -0.38 -2.75 16 4 C -0.20 -4.45 7.27 -38.61 -0.28 -4.73 16 5 C 0.06 1.37 5.08 -106.49 -0.54 0.83 16 6 C -0.44 -10.63 7.58 -37.87 -0.29 -10.92 16 7 H 0.10 2.50 7.08 -52.49 -0.37 2.13 16 8 C 0.09 2.00 5.43 -17.32 -0.09 1.90 16 9 N -0.78 -18.47 13.93 55.55 0.77 -17.69 16 10 Si 0.91 18.33 24.49 -169.99 -4.16 14.16 16 11 H -0.27 -5.22 6.68 56.52 0.38 -4.84 16 12 H -0.24 -5.03 6.82 56.52 0.39 -4.64 16 13 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 14 C 0.20 4.98 6.14 -154.52 -0.95 4.03 16 15 N -0.41 -9.15 2.61 -63.27 -0.17 -9.31 16 16 C 0.27 5.11 8.00 -16.38 -0.13 4.98 16 17 C -0.31 -4.89 5.37 -104.83 -0.56 -5.45 16 18 C 0.13 1.64 6.92 -4.97 -0.03 1.61 16 19 N -0.85 -9.24 9.61 -11.41 -0.11 -9.35 16 20 C 0.24 3.83 10.96 -17.03 -0.19 3.64 16 21 N -0.57 -11.25 10.47 -13.69 -0.14 -11.39 16 22 C 0.53 12.10 8.35 -322.60 -2.69 9.40 16 23 N -0.74 -17.66 12.72 29.79 0.38 -17.28 16 24 N -0.42 -10.10 9.37 -8.00 -0.07 -10.18 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 28 H 0.11 1.92 8.06 -52.49 -0.42 1.49 16 29 H 0.12 2.52 4.62 -52.49 -0.24 2.28 16 30 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 31 H 0.17 3.25 7.29 -52.48 -0.38 2.87 16 32 H 0.03 0.35 8.10 -51.93 -0.42 -0.07 16 33 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 34 H 0.34 3.36 8.99 -39.29 -0.35 3.01 16 35 H 0.34 2.86 9.08 -39.30 -0.36 2.50 16 36 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.34 7.46 8.90 -40.82 -0.36 7.10 16 LS Contribution 312.43 15.07 4.71 4.71 Total: -1.00 -29.74 312.43 -9.33 -39.07 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -4.19 Total: 16.00 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -6.34 Total: 1.26 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: 0.66 Total: -75.20 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -4.16 Total: 14.16 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.74 -9.33 -39.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161418208.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.293 kcal (2) G-P(sol) polarization free energy of solvation -29.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds