Wall clock time and date at job start Tue Mar 31 2020 05:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38759 * 119.28136 * 2 1 4 4 C 1.37935 * 119.59819 * 180.02562 * 3 2 1 5 5 C 1.41083 * 118.26671 * 359.97438 * 4 3 2 6 6 C 1.41023 * 120.70502 * 179.97438 * 5 4 3 7 7 H 1.08001 * 120.00160 * 208.46589 * 6 5 4 8 8 C 1.39989 * 119.99727 * 28.46536 * 6 5 4 9 9 N 1.30830 * 119.99933 * 198.04819 * 8 6 5 10 10 Si 1.86801 * 119.99939 * 18.05326 * 8 6 5 11 11 H 1.48499 * 109.46987 * 264.83715 * 10 8 6 12 12 H 1.48501 * 109.47279 * 24.83560 * 10 8 6 13 13 H 1.48493 * 109.47185 * 144.83696 * 10 8 6 14 14 C 1.41569 * 118.59695 * 0.27704 * 5 4 3 15 15 N 1.38721 * 119.89776 * 179.70229 * 14 5 4 16 16 C 1.36552 * 120.17187 * 51.90525 * 15 14 5 17 17 C 1.35631 * 119.22702 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.22313 * 180.02562 * 17 16 15 19 19 N 1.46903 * 109.46898 * 90.00095 * 18 17 16 20 20 C 1.40161 * 119.56738 * 0.02562 * 17 16 15 21 21 N 1.31358 * 120.32887 * 359.97438 * 20 17 16 22 22 C 1.34346 * 120.80972 * 359.71325 * 21 20 17 23 23 N 1.31355 * 119.79380 * 180.28242 * 22 21 20 24 24 N 1.31896 * 119.27791 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47326 * 89.99618 * 1 2 3 26 26 H 1.09000 * 109.47257 * 209.99962 * 1 2 3 27 27 H 1.09000 * 109.46803 * 329.99721 * 1 2 3 28 28 H 1.07995 * 120.19870 * 0.04861 * 3 2 1 29 29 H 1.07997 * 120.86635 * 179.97438 * 4 3 2 30 30 H 0.97001 * 120.00084 * 180.02562 * 9 8 6 31 31 H 1.08003 * 120.39105 * 359.97438 * 16 15 14 32 32 H 1.08997 * 109.47598 * 209.99929 * 18 17 16 33 33 H 1.08999 * 109.46928 * 330.00338 * 18 17 16 34 34 H 1.00899 * 111.00137 * 56.04955 * 19 18 17 35 35 H 1.00894 * 110.99966 * 180.02562 * 19 18 17 36 36 H 1.08001 * 119.83578 * 180.02562 * 20 17 16 37 37 H 0.96996 * 120.00303 * 5.34826 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.2103 0.0000 4 6 3.5650 1.2179 -0.0005 5 6 4.2400 -0.0210 -0.0005 6 6 5.6492 -0.0732 -0.0016 7 1 6.1581 -0.9150 -0.4474 8 6 6.3886 0.9663 0.5752 9 7 7.6546 1.1112 0.2789 10 14 5.5675 2.1462 1.7681 11 1 5.1143 3.3555 1.0351 12 1 4.3978 1.4809 2.3963 13 1 6.5374 2.5401 2.8212 14 6 3.4727 -1.2107 -0.0060 15 7 4.1086 -2.4435 -0.0123 16 6 5.0710 -2.7242 0.9149 17 6 5.6807 -3.9355 0.8907 18 6 6.7454 -4.2692 1.9037 19 7 6.1227 -4.8821 3.0846 20 6 5.3141 -4.8750 -0.0826 21 7 4.3860 -4.5868 -0.9664 22 6 3.7685 -3.3938 -0.9517 23 7 2.8393 -3.1287 -1.8415 24 7 2.1520 -1.1505 -0.0005 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6372 2.1406 0.0008 29 1 4.1139 2.1480 -0.0010 30 1 8.1670 1.8312 0.6788 31 1 5.3441 -1.9899 1.6583 32 1 7.4582 -4.9675 1.4652 33 1 7.2646 -3.3573 2.1988 34 1 5.5814 -5.6939 2.8277 35 1 6.8164 -5.1149 3.7793 36 1 5.7965 -5.8410 -0.1056 37 1 2.5460 -3.8189 -2.4567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161418208.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:18 Heat of formation + Delta-G solvation = 85.368134 kcal Electronic energy + Delta-G solvation = -22443.002284 eV Core-core repulsion = 19220.068101 eV Total energy + Delta-G solvation = -3222.934183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.34065 -40.33227 -36.88996 -36.44228 -35.84326 -34.11192 -33.56482 -32.29871 -30.47505 -29.77377 -26.88353 -25.60185 -25.18097 -24.30734 -22.83766 -22.25128 -19.57934 -19.08429 -18.80924 -17.91550 -17.63695 -17.00775 -16.54178 -15.89446 -15.60539 -15.47728 -15.30951 -15.07106 -14.90795 -14.59561 -14.24263 -13.78070 -13.64526 -13.43916 -13.15682 -13.10447 -13.02585 -12.62629 -12.27012 -12.21465 -11.82970 -11.52885 -11.38491 -11.03128 -10.49987 -10.33903 -10.03062 -9.67182 -9.46747 -9.05555 -8.46476 -6.65744 -0.22468 0.47364 0.71841 0.82847 1.23509 1.36498 1.45444 1.54297 2.03684 2.47875 2.76503 3.25257 3.47670 3.60054 3.80126 3.94402 4.06608 4.11185 4.16537 4.28539 4.42007 4.57563 4.70975 4.78316 4.85114 4.85889 4.94593 5.05449 5.16054 5.18494 5.24026 5.37710 5.47380 5.71013 5.81899 5.94471 6.11686 6.35572 6.47751 6.54448 6.78604 6.90241 7.41978 7.61742 7.99672 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.008587 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.330114 B = 3259.898853 C = 4757.859913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.002 3.998 3 C -0.113 4.113 4 C -0.206 4.206 5 C 0.038 3.962 6 C -0.453 4.453 7 H 0.062 0.938 8 C 0.061 3.939 9 N -0.815 5.815 10 Si 0.958 3.042 11 H -0.252 1.252 12 H -0.254 1.254 13 H -0.268 1.268 14 C 0.187 3.813 15 N -0.418 5.418 16 C 0.232 3.768 17 C -0.283 4.283 18 C 0.139 3.861 19 N -0.858 5.858 20 C 0.252 3.748 21 N -0.586 5.586 22 C 0.521 3.479 23 N -0.779 5.779 24 N -0.445 5.445 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.154 0.846 29 H 0.125 0.875 30 H 0.302 0.698 31 H 0.166 0.834 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.346 0.654 35 H 0.355 0.645 36 H 0.208 0.792 37 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 -4.511 7.276 8.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.139 4.139 3 C -0.133 4.133 4 C -0.232 4.232 5 C 0.031 3.969 6 C -0.481 4.481 7 H 0.080 0.920 8 C -0.159 4.159 9 N -0.438 5.438 10 Si 0.780 3.220 11 H -0.177 1.177 12 H -0.178 1.178 13 H -0.194 1.194 14 C -0.043 4.043 15 N -0.110 5.110 16 C 0.094 3.906 17 C -0.295 4.295 18 C 0.008 3.992 19 N -0.391 5.391 20 C 0.064 3.936 21 N -0.308 5.308 22 C 0.154 3.846 23 N -0.417 5.417 24 N -0.155 5.155 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.172 0.828 29 H 0.142 0.858 30 H 0.113 0.887 31 H 0.183 0.817 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.159 0.841 35 H 0.169 0.831 36 H 0.224 0.776 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.710 -3.951 6.294 7.625 hybrid contribution 1.641 0.001 -0.003 1.641 sum -0.069 -3.949 6.291 7.428 Atomic orbital electron populations 1.20389 0.87447 1.02772 1.02111 1.21055 0.97396 0.86979 1.08487 1.21898 0.94048 0.99368 0.97965 1.21456 0.94992 0.96468 1.10331 1.18405 0.94344 0.91289 0.92868 1.19162 0.89466 1.06263 1.33201 0.91983 1.26753 0.95022 0.97452 0.96675 1.69671 1.09747 1.29361 1.35023 0.85596 0.79169 0.78807 0.78417 1.17700 1.17792 1.19379 1.18019 0.88269 0.83308 1.14684 1.41253 1.32187 1.12544 1.25020 1.22558 0.83580 0.96894 0.87569 1.20135 1.08764 0.94576 1.05990 1.20182 0.91145 0.99993 0.87880 1.58646 1.30635 1.36604 1.13179 1.23995 0.86416 0.98775 0.84438 1.69941 1.15435 1.16457 1.28950 1.20409 0.92327 0.82856 0.89020 1.70034 1.20568 1.37833 1.13245 1.66303 1.08831 1.31455 1.08886 0.91683 0.92646 0.88987 0.82811 0.85766 0.88668 0.81666 0.91438 0.90920 0.84056 0.83073 0.77552 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.24 10.15 71.24 0.72 -1.52 16 2 C 0.00 0.07 6.79 42.67 0.29 0.36 16 3 C -0.11 -4.50 9.70 22.32 0.22 -4.28 16 4 C -0.21 -9.26 7.27 22.90 0.17 -9.09 16 5 C 0.04 1.88 5.08 -21.08 -0.11 1.77 16 6 C -0.45 -22.98 7.58 23.38 0.18 -22.81 16 7 H 0.06 3.47 7.08 -2.91 -0.02 3.45 16 8 C 0.06 2.86 5.43 85.27 0.46 3.32 16 9 N -0.81 -39.12 13.93 21.84 0.30 -38.81 16 10 Si 0.96 37.17 24.49 68.60 1.68 38.85 16 11 H -0.25 -9.19 6.68 99.48 0.66 -8.53 16 12 H -0.25 -10.28 6.82 99.48 0.68 -9.60 16 13 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 14 C 0.19 9.41 6.14 133.82 0.82 10.24 16 15 N -0.42 -19.60 2.61 -354.08 -0.93 -20.52 16 16 C 0.23 9.20 8.00 83.35 0.67 9.87 16 17 C -0.28 -8.66 5.37 -20.00 -0.11 -8.77 16 18 C 0.14 3.07 6.92 85.56 0.59 3.66 16 19 N -0.86 -16.46 9.61 -190.00 -1.83 -18.29 16 20 C 0.25 7.46 10.96 85.23 0.93 8.39 16 21 N -0.59 -23.09 10.47 -197.24 -2.07 -25.16 16 22 C 0.52 24.56 8.35 261.41 2.18 26.74 16 23 N -0.78 -38.84 12.72 -59.67 -0.76 -39.60 16 24 N -0.45 -21.95 9.37 -179.23 -1.68 -23.63 16 25 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.09 2.29 8.07 -2.39 -0.02 2.27 16 28 H 0.15 4.70 8.06 -2.91 -0.02 4.67 16 29 H 0.12 5.26 4.62 -2.91 -0.01 5.24 16 30 H 0.30 12.86 8.30 -92.71 -0.77 12.09 16 31 H 0.17 6.60 7.29 -2.91 -0.02 6.58 16 32 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 33 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 34 H 0.35 5.83 8.99 -89.69 -0.81 5.02 16 35 H 0.35 4.99 9.08 -89.70 -0.81 4.18 16 36 H 0.21 3.77 8.06 -2.91 -0.02 3.75 16 37 H 0.34 15.69 8.90 -92.71 -0.83 14.86 16 Total: -1.00 -68.02 312.43 0.38 -67.64 By element: Atomic # 1 Polarization: 43.01 SS G_CDS: -1.36 Total: 41.64 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 7.02 Total: 17.88 kcal Atomic # 7 Polarization: -159.06 SS G_CDS: -6.95 Total: -166.01 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 1.68 Total: 38.85 kcal Total: -68.02 0.38 -67.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161418208.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.009 kcal (2) G-P(sol) polarization free energy of solvation -68.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds