Wall clock time and date at job start Tue Mar 31 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38594 * 120.79747 * 2 1 4 4 N 1.32332 * 119.10260 * 179.97438 * 3 2 1 5 5 C 1.31792 * 120.81925 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.12419 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47045 * 90.00029 * 6 5 4 8 8 N 1.46495 * 109.47290 * 179.97438 * 7 6 5 9 9 C 1.37935 * 120.00038 * 179.97438 * 8 7 6 10 10 N 1.32611 * 120.23957 * 0.02562 * 9 8 7 11 11 C 1.32239 * 120.09150 * 179.97438 * 10 9 8 12 12 C 1.38975 * 120.56806 * 359.97438 * 11 10 9 13 13 N 1.31718 * 120.47247 * 0.02562 * 12 11 10 14 14 C 1.33908 * 119.89621 * 0.02562 * 13 12 11 15 15 C 1.40816 * 120.27629 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00320 * 179.97438 * 15 14 13 17 17 C 1.40118 * 120.00062 * 359.97047 * 15 14 13 18 18 N 1.30729 * 120.00035 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00103 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46890 * 60.00244 * 19 17 15 21 21 H 1.48505 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47267 * 300.00155 * 19 17 15 23 23 N 1.31789 * 121.75503 * 0.28032 * 5 4 3 24 24 C 1.32340 * 120.81658 * 359.43622 * 23 5 4 25 25 H 1.09005 * 109.47006 * 90.00341 * 1 2 3 26 26 H 1.09001 * 109.47221 * 210.00318 * 1 2 3 27 27 H 1.09003 * 109.47145 * 330.00461 * 1 2 3 28 28 H 1.08004 * 120.45152 * 359.94546 * 3 2 1 29 29 H 1.09001 * 109.46846 * 329.99975 * 6 5 4 30 30 H 1.09004 * 109.47298 * 210.00043 * 6 5 4 31 31 H 1.09004 * 109.47096 * 59.99795 * 7 6 5 32 32 H 1.09004 * 109.47084 * 300.00145 * 7 6 5 33 33 H 0.97005 * 119.99837 * 0.02562 * 8 7 6 34 34 H 1.07998 * 119.72156 * 179.97438 * 11 10 9 35 35 H 1.07998 * 119.76395 * 179.72244 * 12 11 10 36 36 H 0.97003 * 120.00359 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.44497 * 180.30034 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5394 1.1514 0.0005 5 6 4.1808 0.0001 0.0015 6 6 5.6879 0.0001 0.0015 7 6 6.1979 0.0014 1.4440 8 7 7.6628 0.0007 1.4440 9 6 8.3525 0.0022 2.6386 10 7 7.6942 0.0037 3.7898 11 6 8.3584 0.0046 4.9333 12 6 9.7481 0.0035 4.9435 13 7 10.4244 0.0020 3.8132 14 6 9.7709 0.0021 2.6444 15 6 10.4859 0.0000 1.4313 16 1 9.9543 -0.0003 0.4911 17 6 11.8870 -0.0016 1.4438 18 7 12.5305 -0.0016 2.5818 19 14 12.8355 -0.0036 -0.1655 20 1 12.4851 1.2088 -0.9481 21 1 14.2930 -0.0057 0.1190 22 1 12.4824 -1.2161 -0.9467 23 7 3.5395 -1.1512 -0.0034 24 6 2.2167 -1.1904 0.0016 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6971 2.1374 -0.0009 29 1 6.0512 0.8896 -0.5131 30 1 6.0513 -0.8904 -0.5116 31 1 5.8345 -0.8882 1.9587 32 1 5.8345 0.8918 1.9571 33 1 8.1479 0.0000 0.6039 34 1 7.8162 0.0062 5.8674 35 1 10.2773 0.0088 5.8849 36 1 13.5005 -0.0030 2.5905 37 1 1.6973 -2.1373 0.0023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162238564.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:49 Heat of formation + Delta-G solvation = 91.277709 kcal Electronic energy + Delta-G solvation = -20863.251103 eV Core-core repulsion = 17640.573179 eV Total energy + Delta-G solvation = -3222.677924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.21715 -38.91151 -35.90662 -34.16363 -33.92325 -33.82153 -31.69751 -31.05429 -28.70888 -26.62826 -25.80385 -24.80368 -23.61332 -22.05405 -21.39204 -20.99674 -17.89755 -17.57662 -17.09308 -16.40815 -15.74098 -15.23107 -14.83788 -14.64561 -14.48029 -14.06097 -13.84042 -13.71732 -13.27828 -13.14290 -12.89340 -12.76998 -12.54995 -11.97346 -11.61186 -11.36610 -11.36032 -11.19143 -10.96121 -10.94371 -10.59006 -10.20482 -9.78124 -9.34670 -9.34471 -9.29476 -9.28594 -8.52101 -7.29997 -6.75477 -6.37150 -4.38154 0.71102 0.96758 2.70956 3.07498 3.08754 3.12110 3.30193 3.55364 3.77390 3.92088 4.05040 4.38848 4.50122 4.55042 4.57776 4.78207 5.17147 5.20157 5.25646 5.35997 5.41770 5.55162 5.71987 5.81278 5.91092 6.04605 6.20767 6.26704 6.37148 6.39286 6.55327 6.79813 6.86808 7.04456 7.11770 7.70532 8.01006 8.01460 8.15078 8.43849 8.66622 8.91286 9.51683 10.04654 10.28484 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.021854 B = 0.003498 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.931390 B = 8001.819354 C = 8990.179856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.206 4.206 3 C 0.148 3.852 4 N -0.509 5.509 5 C 0.328 3.672 6 C -0.067 4.067 7 C 0.158 3.842 8 N -0.723 5.723 9 C 0.263 3.737 10 N -0.501 5.501 11 C -0.085 4.085 12 C 0.029 3.971 13 N -0.449 5.449 14 C 0.195 3.805 15 C -0.423 4.423 16 H 0.083 0.917 17 C 0.069 3.931 18 N -0.715 5.715 19 Si 0.908 3.092 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.264 1.264 23 N -0.509 5.509 24 C 0.148 3.852 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.166 0.834 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.403 0.597 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.274 0.726 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.284 0.003 -7.420 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.210 4.210 3 C -0.018 4.018 4 N -0.222 5.222 5 C 0.061 3.939 6 C -0.107 4.107 7 C 0.031 3.969 8 N -0.365 5.365 9 C 0.017 3.983 10 N -0.222 5.222 11 C -0.239 4.239 12 C -0.134 4.134 13 N -0.167 5.167 14 C 0.061 3.939 15 C -0.457 4.457 16 H 0.101 0.899 17 C -0.157 4.157 18 N -0.337 5.337 19 Si 0.732 3.268 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.189 1.189 23 N -0.222 5.222 24 C -0.018 4.018 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.183 0.817 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.241 0.759 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.086 0.914 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.190 0.002 -7.084 17.672 hybrid contribution -0.479 0.000 -0.789 0.923 sum -16.669 0.002 -7.873 18.435 Atomic orbital electron populations 1.20625 0.89254 1.03452 1.02691 1.21701 0.99062 0.95797 1.04403 1.23173 0.89630 0.98177 0.90856 1.68297 1.09841 1.30616 1.13482 1.23025 0.97636 0.83260 0.90016 1.20645 0.85508 1.04749 0.99754 1.20709 0.82380 1.01256 0.92512 1.43558 1.03247 1.84580 1.05143 1.19259 0.89781 1.03171 0.86103 1.67300 1.39944 1.17455 0.97529 1.22254 0.92785 1.14547 0.94308 1.23146 0.92171 1.00329 0.97737 1.69491 1.34919 1.16331 0.95910 1.19032 0.86849 0.94439 0.93594 1.19200 0.91189 1.43401 0.91956 0.89934 1.26011 0.98289 0.93860 0.97535 1.70089 1.08870 1.28391 1.26336 0.86385 0.78554 0.79885 0.82024 1.18880 1.20222 1.18886 1.68301 1.09842 1.30609 1.13488 1.23174 0.89630 0.98178 0.90857 0.90783 0.90993 0.90994 0.81673 0.88658 0.88652 0.92938 0.92928 0.75943 0.86080 0.85861 0.91429 0.81673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.53 10.06 36.01 0.36 -0.17 16 2 C -0.21 -1.85 5.91 -104.36 -0.62 -2.47 16 3 C 0.15 1.56 11.01 -17.20 -0.19 1.37 16 4 N -0.51 -7.11 10.33 -10.73 -0.11 -7.22 16 5 C 0.33 4.79 6.90 -157.20 -1.08 3.71 16 6 C -0.07 -0.98 5.77 -27.88 -0.16 -1.14 16 7 C 0.16 2.89 5.68 -4.04 -0.02 2.87 16 8 N -0.72 -15.16 5.60 -59.89 -0.34 -15.49 16 9 C 0.26 6.67 7.51 -154.83 -1.16 5.51 16 10 N -0.50 -12.76 9.71 -11.67 -0.11 -12.88 16 11 C -0.08 -2.07 11.22 -17.10 -0.19 -2.26 16 12 C 0.03 0.73 11.21 -17.33 -0.19 0.54 16 13 N -0.45 -12.65 8.03 -10.79 -0.09 -12.74 16 14 C 0.20 5.34 6.56 -84.61 -0.56 4.79 16 15 C -0.42 -10.90 8.89 -37.90 -0.34 -11.24 16 16 H 0.08 1.90 6.12 -52.49 -0.32 1.58 16 17 C 0.07 1.71 5.50 -17.32 -0.10 1.62 16 18 N -0.71 -18.95 11.48 55.56 0.64 -18.31 16 19 Si 0.91 18.11 29.56 -169.99 -5.03 13.08 16 20 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 21 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 23 N -0.51 -7.11 10.33 -10.72 -0.11 -7.22 16 24 C 0.15 1.56 11.01 -17.20 -0.19 1.37 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 27 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 28 H 0.17 1.19 8.06 -52.48 -0.42 0.77 16 29 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.40 7.77 6.45 -40.82 -0.26 7.51 16 34 H 0.12 2.57 8.06 -52.49 -0.42 2.14 16 35 H 0.12 2.73 8.06 -52.49 -0.42 2.31 16 36 H 0.27 6.61 8.29 -40.82 -0.34 6.27 16 37 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 323.62 15.07 4.88 4.88 Total: -1.00 -32.92 323.62 -9.07 -41.99 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -4.37 Total: 9.42 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -4.44 Total: 4.49 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -0.12 Total: -73.85 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.92 -9.07 -41.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162238564.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.264 kcal (2) G-P(sol) polarization free energy of solvation -32.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds