Wall clock time and date at job start Tue Mar 31 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38594 * 120.79747 * 2 1 4 4 N 1.32332 * 119.10260 * 179.97438 * 3 2 1 5 5 C 1.31792 * 120.81925 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.12419 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47045 * 90.00029 * 6 5 4 8 8 N 1.46495 * 109.47290 * 179.97438 * 7 6 5 9 9 C 1.37935 * 120.00038 * 179.97438 * 8 7 6 10 10 N 1.32611 * 120.23957 * 0.02562 * 9 8 7 11 11 C 1.32239 * 120.09150 * 179.97438 * 10 9 8 12 12 C 1.38975 * 120.56806 * 359.97438 * 11 10 9 13 13 N 1.31718 * 120.47247 * 0.02562 * 12 11 10 14 14 C 1.33908 * 119.89621 * 0.02562 * 13 12 11 15 15 C 1.40816 * 120.27629 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00320 * 179.97438 * 15 14 13 17 17 C 1.40118 * 120.00062 * 359.97047 * 15 14 13 18 18 N 1.30729 * 120.00035 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00103 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46890 * 60.00244 * 19 17 15 21 21 H 1.48505 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47267 * 300.00155 * 19 17 15 23 23 N 1.31789 * 121.75503 * 0.28032 * 5 4 3 24 24 C 1.32340 * 120.81658 * 359.43622 * 23 5 4 25 25 H 1.09005 * 109.47006 * 90.00341 * 1 2 3 26 26 H 1.09001 * 109.47221 * 210.00318 * 1 2 3 27 27 H 1.09003 * 109.47145 * 330.00461 * 1 2 3 28 28 H 1.08004 * 120.45152 * 359.94546 * 3 2 1 29 29 H 1.09001 * 109.46846 * 329.99975 * 6 5 4 30 30 H 1.09004 * 109.47298 * 210.00043 * 6 5 4 31 31 H 1.09004 * 109.47096 * 59.99795 * 7 6 5 32 32 H 1.09004 * 109.47084 * 300.00145 * 7 6 5 33 33 H 0.97005 * 119.99837 * 0.02562 * 8 7 6 34 34 H 1.07998 * 119.72156 * 179.97438 * 11 10 9 35 35 H 1.07998 * 119.76395 * 179.72244 * 12 11 10 36 36 H 0.97003 * 120.00359 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.44497 * 180.30034 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5394 1.1514 0.0005 5 6 4.1808 0.0001 0.0015 6 6 5.6879 0.0001 0.0015 7 6 6.1979 0.0014 1.4440 8 7 7.6628 0.0007 1.4440 9 6 8.3525 0.0022 2.6386 10 7 7.6942 0.0037 3.7898 11 6 8.3584 0.0046 4.9333 12 6 9.7481 0.0035 4.9435 13 7 10.4244 0.0020 3.8132 14 6 9.7709 0.0021 2.6444 15 6 10.4859 0.0000 1.4313 16 1 9.9543 -0.0003 0.4911 17 6 11.8870 -0.0016 1.4438 18 7 12.5305 -0.0016 2.5818 19 14 12.8355 -0.0036 -0.1655 20 1 12.4851 1.2088 -0.9481 21 1 14.2930 -0.0057 0.1190 22 1 12.4824 -1.2161 -0.9467 23 7 3.5395 -1.1512 -0.0034 24 6 2.2167 -1.1904 0.0016 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6971 2.1374 -0.0009 29 1 6.0512 0.8896 -0.5131 30 1 6.0513 -0.8904 -0.5116 31 1 5.8345 -0.8882 1.9587 32 1 5.8345 0.8918 1.9571 33 1 8.1479 0.0000 0.6039 34 1 7.8162 0.0062 5.8674 35 1 10.2773 0.0088 5.8849 36 1 13.5005 -0.0030 2.5905 37 1 1.6973 -2.1373 0.0023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162238564.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:48 Heat of formation + Delta-G solvation = 69.446807 kcal Electronic energy + Delta-G solvation = -20864.197762 eV Core-core repulsion = 17640.573179 eV Total energy + Delta-G solvation = -3223.624583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.09914 -40.83225 -37.40381 -35.83207 -35.21879 -34.72272 -33.48173 -32.55082 -30.24962 -27.91655 -27.45554 -25.63751 -24.96519 -23.66789 -22.99933 -22.45980 -19.49547 -18.79542 -18.52840 -17.96291 -17.20864 -16.81592 -16.12623 -15.95977 -15.81376 -15.35685 -15.21957 -14.79605 -14.71659 -14.41256 -14.04801 -13.88139 -13.68894 -13.22229 -13.16886 -12.93505 -12.84848 -12.62300 -12.31222 -11.96991 -11.89724 -11.82077 -11.63319 -11.30046 -11.16950 -10.42465 -10.20186 -10.10795 -9.24725 -8.63081 -8.26216 -6.33527 -0.15227 0.13838 0.80505 1.25285 1.45087 1.57478 1.59536 2.24552 2.44773 2.75567 2.89157 3.11229 3.22919 3.69003 3.90949 3.92523 3.95168 4.00932 4.17058 4.17558 4.30112 4.35688 4.51846 4.62244 4.69476 4.84905 4.90834 4.96501 5.01213 5.10384 5.12024 5.17788 5.23096 5.49882 5.81028 6.02002 6.12427 6.27285 6.67323 6.78618 6.99402 7.10171 7.61508 8.09047 8.44365 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.021854 B = 0.003498 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.931390 B = 8001.819354 C = 8990.179856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.186 4.186 3 C 0.133 3.867 4 N -0.535 5.535 5 C 0.302 3.698 6 C -0.054 4.054 7 C 0.171 3.829 8 N -0.714 5.714 9 C 0.257 3.743 10 N -0.518 5.518 11 C -0.088 4.088 12 C 0.010 3.990 13 N -0.485 5.485 14 C 0.160 3.840 15 C -0.443 4.443 16 H 0.102 0.898 17 C 0.021 3.979 18 N -0.756 5.756 19 Si 0.990 3.010 20 H -0.255 1.255 21 H -0.273 1.273 22 H -0.255 1.255 23 N -0.535 5.535 24 C 0.132 3.868 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.196 0.804 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.410 0.590 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.280 0.720 37 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.079 0.002 -9.127 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.190 4.190 3 C -0.033 4.033 4 N -0.249 5.249 5 C 0.034 3.966 6 C -0.093 4.093 7 C 0.045 3.955 8 N -0.356 5.356 9 C 0.009 3.991 10 N -0.240 5.240 11 C -0.241 4.241 12 C -0.151 4.151 13 N -0.204 5.204 14 C 0.026 3.974 15 C -0.478 4.478 16 H 0.120 0.880 17 C -0.201 4.201 18 N -0.378 5.378 19 Si 0.810 3.190 20 H -0.179 1.179 21 H -0.198 1.198 22 H -0.179 1.179 23 N -0.248 5.248 24 C -0.033 4.033 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.213 0.787 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.249 0.751 34 H 0.169 0.831 35 H 0.164 0.836 36 H 0.091 0.909 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -18.036 0.002 -8.791 20.064 hybrid contribution -0.103 0.000 -0.202 0.227 sum -18.139 0.002 -8.993 20.246 Atomic orbital electron populations 1.20743 0.86058 1.04838 1.04077 1.22119 1.01107 0.94581 1.01187 1.23795 0.88761 1.00232 0.90489 1.68245 1.11752 1.30550 1.14305 1.22799 0.97385 0.83987 0.92439 1.20441 0.86476 1.05428 0.96956 1.20597 0.80525 0.99414 0.94956 1.43621 1.04367 1.83369 1.04201 1.19476 0.89799 1.02506 0.87318 1.67406 1.40158 1.18473 0.97972 1.22726 0.92881 1.13282 0.95199 1.23544 0.92915 1.00630 0.98049 1.69434 1.36284 1.17758 0.96891 1.19518 0.88057 0.95599 0.94224 1.19690 0.92288 1.43468 0.92324 0.87976 1.27037 0.98895 0.92680 1.01463 1.70208 1.09504 1.29040 1.29081 0.85137 0.76724 0.80353 0.76803 1.17885 1.19809 1.17896 1.68248 1.11751 1.30541 1.14308 1.23796 0.88762 1.00233 0.90493 0.89137 0.89634 0.89635 0.78685 0.87951 0.87948 0.94675 0.94661 0.75122 0.83063 0.83609 0.90903 0.78687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 10.06 71.24 0.72 0.07 16 2 C -0.19 -2.88 5.91 -19.69 -0.12 -3.00 16 3 C 0.13 2.55 11.01 84.70 0.93 3.48 16 4 N -0.53 -14.64 10.33 -187.85 -1.94 -16.59 16 5 C 0.30 8.79 6.90 138.75 0.96 9.75 16 6 C -0.05 -1.58 5.77 29.85 0.17 -1.41 16 7 C 0.17 6.40 5.68 86.38 0.49 6.89 16 8 N -0.71 -30.37 5.60 -343.40 -1.92 -32.29 16 9 C 0.26 13.27 7.51 134.04 1.01 14.27 16 10 N -0.52 -26.80 9.71 -190.83 -1.85 -28.65 16 11 C -0.09 -4.29 11.22 84.81 0.95 -3.34 16 12 C 0.01 0.54 11.21 84.89 0.95 1.49 16 13 N -0.49 -28.09 8.03 -188.05 -1.51 -29.60 16 14 C 0.16 9.00 6.56 40.35 0.26 9.26 16 15 C -0.44 -23.08 8.89 23.36 0.21 -22.88 16 16 H 0.10 4.67 6.12 -2.91 -0.02 4.66 16 17 C 0.02 1.06 5.50 85.31 0.47 1.53 16 18 N -0.76 -40.72 11.48 21.86 0.25 -40.47 16 19 Si 0.99 36.70 29.56 68.60 2.03 38.73 16 20 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 21 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 22 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 23 N -0.53 -14.64 10.33 -187.84 -1.94 -16.58 16 24 C 0.13 2.55 11.01 84.70 0.93 3.48 16 25 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 26 H 0.08 0.39 8.10 -2.39 -0.02 0.37 16 27 H 0.08 0.39 8.10 -2.39 -0.02 0.37 16 28 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.41 15.88 6.45 -92.70 -0.60 15.28 16 34 H 0.15 6.29 8.06 -2.91 -0.02 6.27 16 35 H 0.15 6.54 8.06 -2.91 -0.02 6.51 16 36 H 0.28 13.68 8.29 -92.71 -0.77 12.91 16 37 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -73.45 323.62 1.55 -71.90 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.51 Total: 33.97 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 7.94 Total: 19.59 kcal Atomic # 7 Polarization: -155.27 SS G_CDS: -8.92 Total: -164.19 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Total: -73.45 1.55 -71.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162238564.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.343 kcal (2) G-P(sol) polarization free energy of solvation -73.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds