Wall clock time and date at job start Tue Mar 31 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52992 * 109.47301 * 345.33582 * 3 2 1 5 5 C 1.53002 * 109.47353 * 179.97438 * 4 3 2 6 6 C 1.53003 * 116.21472 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46732 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.46722 * 180.02562 * 7 6 5 9 9 C 1.38829 * 119.99646 * 180.02562 * 8 7 6 10 10 C 1.39968 * 119.96947 * 0.02562 * 9 8 7 11 11 N 1.32127 * 120.31153 * 180.02562 * 10 9 8 12 12 C 1.31931 * 120.27873 * 359.68860 * 11 10 9 13 13 C 1.40683 * 119.92696 * 0.54000 * 12 11 10 14 14 C 1.41273 * 120.15249 * 179.75753 * 13 12 11 15 15 H 1.08004 * 120.00253 * 5.95994 * 14 13 12 16 16 C 1.40053 * 120.00018 * 185.69042 * 14 13 12 17 17 N 1.30736 * 119.99927 * 354.03011 * 16 14 13 18 18 Si 1.86802 * 119.99916 * 174.03603 * 16 14 13 19 19 H 1.48495 * 109.47465 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47140 * 120.00018 * 18 16 14 21 21 H 1.48503 * 109.46747 * 239.99138 * 18 16 14 22 22 N 1.32240 * 119.97057 * 179.97438 * 9 8 7 23 23 N 1.46498 * 118.58784 * 331.14603 * 5 4 3 24 24 N 1.24171 * 64.92784 * 104.77042 * 23 5 4 25 25 H 4.44647 * 5.63237 * 179.97438 * 4 1 2 26 26 H 1.08995 * 109.47179 * 225.33466 * 3 2 1 27 27 H 1.09004 * 109.46763 * 105.33326 * 3 2 1 28 28 H 1.09009 * 109.47148 * 59.99774 * 4 3 2 29 29 H 1.09000 * 109.47376 * 300.00253 * 4 3 2 30 30 H 1.08999 * 109.47197 * 60.00691 * 6 5 4 31 31 H 1.08996 * 109.47306 * 299.99919 * 6 5 4 32 32 H 1.08999 * 109.46857 * 60.00309 * 7 6 5 33 33 H 1.08996 * 109.47018 * 299.99922 * 7 6 5 34 34 H 0.96993 * 120.00309 * 0.02562 * 8 7 6 35 35 H 1.07997 * 119.84404 * 0.02562 * 10 9 8 36 36 H 1.07994 * 120.03340 * 180.29662 * 12 11 10 37 37 H 0.97001 * 119.99611 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.3945 0.3651 5 6 4.6867 -1.3940 0.3645 6 6 5.3632 -2.7215 0.7125 7 6 6.8825 -2.5470 0.6669 8 7 7.5302 -3.8182 0.9996 9 6 8.9155 -3.9061 1.0232 10 6 9.6927 -2.7796 0.7296 11 7 11.0116 -2.8558 0.7496 12 6 11.6078 -3.9931 1.0525 13 6 10.8373 -5.1333 1.3446 14 6 11.4707 -6.3549 1.6646 15 1 12.5439 -6.3928 1.7799 16 6 10.7065 -7.5156 1.8379 17 7 9.4010 -7.4476 1.8193 18 14 11.5524 -9.1611 2.0956 19 1 13.0248 -8.9694 2.0748 20 1 11.1449 -9.7272 3.4066 21 1 11.1598 -10.0949 1.0097 22 7 9.4996 -5.0537 1.3240 23 7 5.3870 -0.4611 -0.5217 24 7 5.3874 -0.1466 0.6795 25 1 -1.0498 -0.0003 0.0003 26 1 3.0090 0.7232 0.7309 27 1 3.0092 0.2726 -0.9911 28 1 2.7936 -2.1172 -0.3658 29 1 2.7935 -1.6666 1.3562 30 1 5.0627 -3.4823 -0.0080 31 1 5.0632 -3.0307 1.7138 32 1 7.1826 -1.7864 1.3877 33 1 7.1828 -2.2376 -0.3341 34 1 6.9913 -4.5985 1.2033 35 1 9.2120 -1.8438 0.4856 36 1 12.6860 -4.0496 1.0723 37 1 8.8717 -8.2515 1.9397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163380821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:37 Heat of formation + Delta-G solvation = 174.068851 kcal Electronic energy + Delta-G solvation = -20531.296859 eV Core-core repulsion = 17312.209028 eV Total energy + Delta-G solvation = -3219.087831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.84708 -38.91873 -35.88732 -35.50523 -33.92377 -32.43534 -31.64379 -30.73043 -28.62394 -25.93440 -25.81640 -23.01868 -22.68118 -22.28611 -20.93499 -20.62941 -18.55890 -17.55474 -16.67659 -16.30895 -15.57905 -15.37842 -15.13222 -14.98691 -14.85452 -14.53248 -14.07753 -13.65423 -13.49029 -13.20620 -13.07443 -12.82320 -12.58330 -12.00116 -11.75174 -11.52476 -11.36795 -11.34369 -11.20288 -10.71619 -10.53783 -10.52284 -10.33800 -10.13348 -9.88677 -9.66101 -9.39925 -8.38304 -7.41082 -6.77298 -6.46976 -4.67189 0.68556 2.40395 2.47289 2.67823 2.87345 2.96810 3.03595 3.07847 3.09819 3.26313 3.62484 3.86200 3.91581 4.37567 4.47176 4.69324 4.70072 4.93251 4.98405 5.05915 5.14884 5.47486 5.47730 5.57397 5.58645 5.63236 5.81872 5.89530 5.97683 6.07756 6.30181 6.49839 6.76251 7.01966 7.11176 7.23682 7.57106 7.91255 8.01831 8.39256 8.53913 8.82680 9.40234 9.97736 10.16931 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.028174 B = 0.002899 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.594996 B = 9656.637210 C =10580.833723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.185 4.185 3 C -0.025 4.025 4 C -0.079 4.079 5 C 0.038 3.962 6 C -0.100 4.100 7 C 0.131 3.869 8 N -0.729 5.729 9 C 0.372 3.628 10 C -0.168 4.168 11 N -0.407 5.407 12 C -0.105 4.105 13 C 0.244 3.756 14 C -0.415 4.415 15 H 0.091 0.909 16 C 0.067 3.933 17 N -0.710 5.710 18 Si 0.911 3.089 19 H -0.258 1.258 20 H -0.273 1.273 21 H -0.272 1.272 22 N -0.507 5.507 23 N -0.119 5.119 24 N -0.119 5.119 25 H 0.219 0.781 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.398 0.602 35 H 0.117 0.883 36 H 0.131 0.869 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.585 6.260 -1.672 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.185 4.185 3 C -0.062 4.062 4 C -0.119 4.119 5 C -0.143 4.143 6 C -0.139 4.139 7 C 0.005 3.995 8 N -0.367 5.367 9 C 0.129 3.871 10 C -0.330 4.330 11 N -0.119 5.119 12 C -0.276 4.276 13 C 0.116 3.884 14 C -0.448 4.448 15 H 0.109 0.891 16 C -0.159 4.159 17 N -0.331 5.331 18 Si 0.735 3.265 19 H -0.182 1.182 20 H -0.198 1.198 21 H -0.198 1.198 22 N -0.233 5.233 23 N -0.026 5.026 24 N -0.026 5.026 25 H 0.236 0.764 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.233 0.767 35 H 0.135 0.865 36 H 0.148 0.852 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.216 7.275 -1.950 16.979 hybrid contribution -0.396 -1.391 0.267 1.471 sum -15.612 5.884 -1.683 16.769 Atomic orbital electron populations 1.24923 0.95927 1.00111 1.00847 1.22736 0.94054 1.01035 1.00689 1.18844 0.85954 0.97952 1.03428 1.21276 0.88218 0.97497 1.04918 1.24252 0.94182 0.87701 1.08177 1.21503 0.94623 0.93244 1.04570 1.21161 0.90184 0.88005 1.00180 1.43882 1.03067 1.10935 1.78804 1.19464 0.84732 0.92115 0.90797 1.21893 0.90309 0.97690 1.23059 1.67505 1.10161 1.27060 1.07127 1.22926 0.99170 0.90677 1.14790 1.19104 0.87388 0.93215 0.88653 1.19665 0.95060 0.91233 1.38857 0.89072 1.26141 0.94807 1.01341 0.93601 1.70122 1.05663 1.29549 1.27764 0.86210 0.80843 0.80845 0.78623 1.18150 1.19786 1.19751 1.69019 1.10485 1.20385 1.23433 1.83970 1.01559 1.06463 1.10599 1.83971 1.01556 1.07738 1.09330 0.76444 0.89112 0.89114 0.88586 0.88579 0.88447 0.88446 0.92487 0.92502 0.76702 0.86535 0.85185 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.53 19.25 29.55 0.57 -0.96 16 2 C -0.19 -1.63 13.34 -37.12 -0.50 -2.12 16 3 C -0.03 -0.20 4.96 -29.52 -0.15 -0.35 16 4 C -0.08 -0.59 5.55 -26.73 -0.15 -0.73 16 5 C 0.04 0.37 4.08 -191.52 -0.78 -0.41 16 6 C -0.10 -1.04 5.71 -26.73 -0.15 -1.19 16 7 C 0.13 1.98 4.16 -4.04 -0.02 1.96 16 8 N -0.73 -13.97 5.72 -60.27 -0.34 -14.32 16 9 C 0.37 9.10 7.66 -155.01 -1.19 7.92 16 10 C -0.17 -4.15 10.50 -16.78 -0.18 -4.33 16 11 N -0.41 -10.65 10.47 -12.11 -0.13 -10.77 16 12 C -0.11 -2.76 10.97 -16.59 -0.18 -2.95 16 13 C 0.24 6.74 6.54 -84.84 -0.55 6.19 16 14 C -0.42 -10.85 9.15 -37.75 -0.35 -11.19 16 15 H 0.09 2.20 7.86 -52.48 -0.41 1.79 16 16 C 0.07 1.66 5.49 -17.34 -0.10 1.56 16 17 N -0.71 -18.11 11.51 55.55 0.64 -17.47 16 18 Si 0.91 17.90 29.56 -169.99 -5.03 12.88 16 19 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 22 N -0.51 -13.83 8.10 -10.14 -0.08 -13.91 16 23 N -0.12 -1.38 13.89 -2.01 -0.03 -1.40 16 24 N -0.12 -1.38 13.89 -2.01 -0.03 -1.40 16 25 H 0.22 0.91 7.80 -54.10 -0.42 0.49 16 26 H 0.09 0.75 7.72 -51.93 -0.40 0.35 16 27 H 0.09 0.75 7.72 -51.93 -0.40 0.35 16 28 H 0.10 0.62 8.14 -51.92 -0.42 0.19 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.91 7.50 -51.93 -0.39 0.52 16 33 H 0.06 0.91 7.51 -51.93 -0.39 0.52 16 34 H 0.40 7.26 8.60 -40.82 -0.35 6.91 16 35 H 0.12 2.62 6.70 -52.49 -0.35 2.27 16 36 H 0.13 3.10 8.06 -52.49 -0.42 2.68 16 37 H 0.27 6.26 8.29 -40.82 -0.34 5.92 16 LS Contribution 332.14 15.07 5.01 5.01 Total: -1.00 -31.15 332.14 -8.07 -39.22 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -4.37 Total: 8.80 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -3.71 Total: -6.62 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.03 Total: -59.28 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.15 -8.07 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163380821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.286 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds