Wall clock time and date at job start Tue Mar 31 2020 05:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52992 * 109.47301 * 345.33582 * 3 2 1 5 5 C 1.53002 * 109.47353 * 179.97438 * 4 3 2 6 6 C 1.53003 * 116.21472 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46732 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.46722 * 180.02562 * 7 6 5 9 9 C 1.38829 * 119.99646 * 180.02562 * 8 7 6 10 10 C 1.39968 * 119.96947 * 0.02562 * 9 8 7 11 11 N 1.32127 * 120.31153 * 180.02562 * 10 9 8 12 12 C 1.31931 * 120.27873 * 359.68860 * 11 10 9 13 13 C 1.40683 * 119.92696 * 0.54000 * 12 11 10 14 14 C 1.41273 * 120.15249 * 179.75753 * 13 12 11 15 15 H 1.08004 * 120.00253 * 5.95994 * 14 13 12 16 16 C 1.40053 * 120.00018 * 185.69042 * 14 13 12 17 17 N 1.30736 * 119.99927 * 354.03011 * 16 14 13 18 18 Si 1.86802 * 119.99916 * 174.03603 * 16 14 13 19 19 H 1.48495 * 109.47465 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47140 * 120.00018 * 18 16 14 21 21 H 1.48503 * 109.46747 * 239.99138 * 18 16 14 22 22 N 1.32240 * 119.97057 * 179.97438 * 9 8 7 23 23 N 1.46498 * 118.58784 * 331.14603 * 5 4 3 24 24 N 1.24171 * 64.92784 * 104.77042 * 23 5 4 25 25 H 4.44647 * 5.63237 * 179.97438 * 4 1 2 26 26 H 1.08995 * 109.47179 * 225.33466 * 3 2 1 27 27 H 1.09004 * 109.46763 * 105.33326 * 3 2 1 28 28 H 1.09009 * 109.47148 * 59.99774 * 4 3 2 29 29 H 1.09000 * 109.47376 * 300.00253 * 4 3 2 30 30 H 1.08999 * 109.47197 * 60.00691 * 6 5 4 31 31 H 1.08996 * 109.47306 * 299.99919 * 6 5 4 32 32 H 1.08999 * 109.46857 * 60.00309 * 7 6 5 33 33 H 1.08996 * 109.47018 * 299.99922 * 7 6 5 34 34 H 0.96993 * 120.00309 * 0.02562 * 8 7 6 35 35 H 1.07997 * 119.84404 * 0.02562 * 10 9 8 36 36 H 1.07994 * 120.03340 * 180.29662 * 12 11 10 37 37 H 0.97001 * 119.99611 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.3945 0.3651 5 6 4.6867 -1.3940 0.3645 6 6 5.3632 -2.7215 0.7125 7 6 6.8825 -2.5470 0.6669 8 7 7.5302 -3.8182 0.9996 9 6 8.9155 -3.9061 1.0232 10 6 9.6927 -2.7796 0.7296 11 7 11.0116 -2.8558 0.7496 12 6 11.6078 -3.9931 1.0525 13 6 10.8373 -5.1333 1.3446 14 6 11.4707 -6.3549 1.6646 15 1 12.5439 -6.3928 1.7799 16 6 10.7065 -7.5156 1.8379 17 7 9.4010 -7.4476 1.8193 18 14 11.5524 -9.1611 2.0956 19 1 13.0248 -8.9694 2.0748 20 1 11.1449 -9.7272 3.4066 21 1 11.1598 -10.0949 1.0097 22 7 9.4996 -5.0537 1.3240 23 7 5.3870 -0.4611 -0.5217 24 7 5.3874 -0.1466 0.6795 25 1 -1.0498 -0.0003 0.0003 26 1 3.0090 0.7232 0.7309 27 1 3.0092 0.2726 -0.9911 28 1 2.7936 -2.1172 -0.3658 29 1 2.7935 -1.6666 1.3562 30 1 5.0627 -3.4823 -0.0080 31 1 5.0632 -3.0307 1.7138 32 1 7.1826 -1.7864 1.3877 33 1 7.1828 -2.2376 -0.3341 34 1 6.9913 -4.5985 1.2033 35 1 9.2120 -1.8438 0.4856 36 1 12.6860 -4.0496 1.0723 37 1 8.8717 -8.2515 1.9397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163380821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:36 Heat of formation + Delta-G solvation = 151.204837 kcal Electronic energy + Delta-G solvation = -20532.288317 eV Core-core repulsion = 17312.209028 eV Total energy + Delta-G solvation = -3220.079289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.69231 -40.82465 -37.40638 -36.11748 -35.81666 -33.94809 -32.88820 -31.95730 -30.19663 -27.79150 -26.84733 -24.49081 -23.88508 -23.55936 -22.66435 -21.45785 -19.42991 -19.13248 -18.37752 -17.44067 -17.00737 -16.66212 -16.52574 -16.43591 -15.93017 -15.74464 -15.35437 -14.88887 -14.73665 -14.51856 -14.40751 -13.58166 -13.49340 -13.42066 -13.26446 -12.99963 -12.80939 -12.63095 -12.56370 -12.15473 -11.95971 -11.77510 -11.43029 -11.38490 -11.15622 -11.15516 -10.87740 -10.26386 -9.35887 -8.56420 -8.35069 -6.65521 -0.18069 0.80395 1.22122 1.43963 1.55734 1.60163 1.79912 1.87408 2.10408 2.15882 2.21961 2.33279 2.81796 3.15962 3.57684 3.64250 3.85018 4.04742 4.08236 4.12622 4.15846 4.22081 4.38729 4.40741 4.49157 4.61263 4.73162 4.81881 4.85236 4.93697 4.97189 5.02040 5.13007 5.13063 5.20186 5.66862 6.08678 6.15486 6.62605 6.65853 6.66116 6.96876 7.42728 8.03599 8.34228 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.028174 B = 0.002899 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.594996 B = 9656.637210 C =10580.833723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.222 4.222 3 C -0.023 4.023 4 C -0.073 4.073 5 C 0.054 3.946 6 C -0.092 4.092 7 C 0.131 3.869 8 N -0.716 5.716 9 C 0.367 3.633 10 C -0.181 4.181 11 N -0.418 5.418 12 C -0.131 4.131 13 C 0.213 3.787 14 C -0.437 4.437 15 H 0.102 0.898 16 C 0.022 3.978 17 N -0.739 5.739 18 Si 0.995 3.005 19 H -0.252 1.252 20 H -0.264 1.264 21 H -0.266 1.266 22 N -0.535 5.535 23 N -0.137 5.137 24 N -0.137 5.137 25 H 0.247 0.753 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.403 0.597 35 H 0.134 0.866 36 H 0.144 0.856 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.158 4.901 -1.417 17.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.222 4.222 3 C -0.059 4.059 4 C -0.112 4.112 5 C -0.127 4.127 6 C -0.132 4.132 7 C 0.006 3.994 8 N -0.353 5.353 9 C 0.122 3.878 10 C -0.343 4.343 11 N -0.130 5.130 12 C -0.300 4.300 13 C 0.085 3.915 14 C -0.469 4.469 15 H 0.120 0.880 16 C -0.201 4.201 17 N -0.360 5.360 18 Si 0.814 3.186 19 H -0.175 1.175 20 H -0.189 1.189 21 H -0.191 1.191 22 N -0.263 5.263 23 N -0.044 5.044 24 N -0.044 5.044 25 H 0.263 0.737 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.239 0.761 35 H 0.151 0.849 36 H 0.161 0.839 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.816 5.952 -1.701 17.920 hybrid contribution -0.030 -0.920 0.181 0.938 sum -16.846 5.032 -1.520 17.647 Atomic orbital electron populations 1.25729 0.96806 0.98706 0.99418 1.23054 0.94682 1.02394 1.02041 1.18772 0.86030 0.98226 1.02921 1.21326 0.86136 0.97502 1.06286 1.24512 0.95258 0.86635 1.06315 1.21505 0.90973 0.94271 1.06406 1.21294 0.93104 0.85868 0.99163 1.43982 1.01236 1.12622 1.77450 1.19772 0.86800 0.91430 0.89847 1.22198 0.90186 0.98608 1.23330 1.67481 1.10995 1.27201 1.07302 1.23106 0.99866 0.90733 1.16278 1.19556 0.88122 0.94258 0.89519 1.20100 0.95948 0.91808 1.39053 0.88018 1.27111 0.95398 1.04930 0.92694 1.70180 1.07224 1.31357 1.27264 0.84966 0.79709 0.75163 0.78755 1.17480 1.18902 1.19103 1.69049 1.10631 1.21570 1.25007 1.83968 1.02087 1.07523 1.10782 1.83969 1.02079 1.08931 1.09374 0.73660 0.89737 0.89746 0.87083 0.87067 0.86597 0.86581 0.93398 0.93434 0.76054 0.84880 0.83905 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 19.25 74.32 1.43 -1.06 16 2 C -0.22 -3.59 13.34 31.12 0.42 -3.17 16 3 C -0.02 -0.34 4.96 28.79 0.14 -0.20 16 4 C -0.07 -0.93 5.55 30.59 0.17 -0.76 16 5 C 0.05 0.95 4.08 88.18 0.36 1.31 16 6 C -0.09 -1.73 5.71 30.60 0.17 -1.55 16 7 C 0.13 3.84 4.16 86.38 0.36 4.20 16 8 N -0.72 -27.13 5.72 -344.61 -1.97 -29.10 16 9 C 0.37 18.15 7.66 133.37 1.02 19.17 16 10 C -0.18 -9.08 10.50 85.07 0.89 -8.19 16 11 N -0.42 -22.32 10.47 -192.23 -2.01 -24.33 16 12 C -0.13 -7.03 10.97 85.28 0.94 -6.09 16 13 C 0.21 12.01 6.54 40.15 0.26 12.27 16 14 C -0.44 -23.00 9.15 23.46 0.21 -22.78 16 15 H 0.10 4.92 7.86 -2.91 -0.02 4.90 16 16 C 0.02 1.09 5.49 85.30 0.47 1.56 16 17 N -0.74 -37.52 11.51 21.84 0.25 -37.27 16 18 Si 0.99 35.83 29.56 68.60 2.03 37.86 16 19 H -0.25 -8.72 7.11 99.48 0.71 -8.02 16 20 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 21 H -0.27 -9.28 7.11 99.48 0.71 -8.57 16 22 N -0.53 -29.68 8.10 -186.00 -1.51 -31.18 16 23 N -0.14 -3.09 13.89 -160.26 -2.23 -5.31 16 24 N -0.14 -3.08 13.89 -160.26 -2.23 -5.31 16 25 H 0.25 1.33 7.80 -4.43 -0.03 1.29 16 26 H 0.08 1.36 7.72 -2.39 -0.02 1.34 16 27 H 0.08 1.36 7.72 -2.39 -0.02 1.34 16 28 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 1.52 7.50 -2.39 -0.02 1.50 16 33 H 0.05 1.51 7.51 -2.39 -0.02 1.49 16 34 H 0.40 14.37 8.60 -92.71 -0.80 13.57 16 35 H 0.13 6.05 6.70 -2.91 -0.02 6.03 16 36 H 0.14 7.00 8.06 -2.91 -0.02 6.98 16 37 H 0.28 12.78 8.29 -92.71 -0.77 12.01 16 Total: -1.00 -68.18 332.14 -0.51 -68.69 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 0.30 Total: 31.25 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 6.85 Total: -5.29 kcal Atomic # 7 Polarization: -122.81 SS G_CDS: -9.69 Total: -132.50 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Total: -68.18 -0.51 -68.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163380821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.894 kcal (2) G-P(sol) polarization free energy of solvation -68.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds