Wall clock time and date at job start Tue Mar 31 2020 05:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31480 * 119.81883 * 2 1 4 4 C 1.32740 * 121.72913 * 180.27065 * 3 2 1 5 5 N 1.38377 * 119.43159 * 179.74767 * 4 3 2 6 6 C 1.46974 * 110.99748 * 0.04809 * 5 4 3 7 7 C 1.53460 * 109.73921 * 165.12498 * 6 5 4 8 8 N 1.46311 * 108.17737 * 49.59454 * 7 6 5 9 9 C 1.34417 * 129.75529 * 163.60238 * 8 7 6 10 10 N 1.30921 * 107.02782 * 180.48066 * 9 8 7 11 11 N 1.28977 * 109.75818 * 359.56612 * 10 9 8 12 12 C 1.29628 * 109.47345 * 0.34906 * 11 10 9 13 13 C 1.47386 * 111.00083 * 235.77305 * 5 4 3 14 14 C 1.39702 * 121.14464 * 359.46845 * 4 3 2 15 15 C 1.36570 * 119.48991 * 0.25519 * 14 4 3 16 16 C 1.40760 * 119.81194 * 179.74368 * 2 1 3 17 17 C 1.41200 * 120.57109 * 359.97438 * 16 2 1 18 18 H 1.08002 * 120.00171 * 334.75826 * 17 16 2 19 19 C 1.39869 * 119.99785 * 154.75211 * 17 16 2 20 20 N 1.30894 * 120.00361 * 343.68003 * 19 17 16 21 21 Si 1.86808 * 119.99774 * 163.67986 * 19 17 16 22 22 H 1.48496 * 109.47085 * 60.00313 * 21 19 17 23 23 H 1.48503 * 109.46722 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47075 * 299.99881 * 21 19 17 25 25 H 1.09003 * 109.46632 * 270.25920 * 1 2 3 26 26 H 1.09000 * 109.46553 * 30.25294 * 1 2 3 27 27 H 1.09000 * 109.47172 * 150.25400 * 1 2 3 28 28 H 1.09008 * 109.42200 * 285.20649 * 6 5 4 29 29 H 1.08996 * 109.42556 * 45.09459 * 6 5 4 30 30 H 1.08998 * 109.72481 * 289.92102 * 7 6 5 31 31 H 1.08996 * 109.71692 * 169.26072 * 7 6 5 32 32 H 1.08000 * 126.48640 * 0.22172 * 9 8 7 33 33 H 1.09001 * 109.75471 * 54.57542 * 13 5 4 34 34 H 1.09004 * 109.75185 * 293.83266 * 13 5 4 35 35 H 1.07998 * 120.26407 * 180.28240 * 14 4 3 36 36 H 1.07994 * 120.79720 * 179.97438 * 15 14 4 37 37 H 0.96999 * 120.00120 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1407 0.0000 4 6 3.4875 1.1850 -0.0053 5 7 4.1269 2.4122 -0.0104 6 6 3.1534 3.5132 -0.0076 7 6 3.8576 4.8268 0.3577 8 7 5.0483 4.9554 -0.4828 9 6 5.8045 6.0359 -0.7427 10 7 6.7534 5.6524 -1.5591 11 7 6.6302 4.3933 -1.8101 12 6 5.6013 3.9249 -1.1757 13 6 5.0528 2.5206 -1.1519 14 6 4.2495 0.0141 -0.0001 15 6 3.6199 -1.1978 0.0054 16 6 2.2068 -1.2213 0.0055 17 6 1.5090 -2.4488 0.0115 18 1 0.5068 -2.4983 0.4110 19 6 2.1157 -3.6006 -0.5000 20 7 3.1746 -3.4990 -1.2628 21 14 1.4148 -5.2841 -0.0945 22 1 0.0152 -5.3684 -0.5837 23 1 2.2339 -6.3330 -0.7533 24 1 1.4384 -5.4890 1.3760 25 1 -0.3633 0.0046 1.0277 26 1 -0.3632 0.8877 -0.5178 27 1 -0.3633 -0.8922 -0.5099 28 1 2.7066 3.6045 -0.9978 29 1 2.3730 3.3054 0.7244 30 1 4.1489 4.8084 1.4079 31 1 3.1869 5.6666 0.1761 32 1 5.6548 7.0328 -0.3551 33 1 4.5185 2.3181 -2.0802 34 1 5.8692 1.8082 -1.0330 35 1 5.3282 0.0667 0.0000 36 1 4.1882 -2.1161 0.0090 37 1 3.5950 -4.2978 -1.6178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163679085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:26 Heat of formation + Delta-G solvation = 126.526333 kcal Electronic energy + Delta-G solvation = -21926.708479 eV Core-core repulsion = 18705.559050 eV Total energy + Delta-G solvation = -3221.149429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.16318 -39.41904 -37.30228 -34.76404 -33.81807 -31.68414 -31.39861 -30.19934 -29.49494 -27.09700 -26.06154 -24.59185 -23.35754 -22.33977 -21.06296 -20.38137 -19.53435 -17.47425 -17.35316 -16.62012 -15.98471 -15.68816 -15.11114 -14.88171 -14.59767 -14.13962 -13.94076 -13.60394 -13.09010 -12.86232 -12.60305 -12.23430 -11.89607 -11.83506 -11.62890 -11.50365 -11.29467 -11.22563 -11.16498 -10.99142 -10.72712 -10.33712 -10.09270 -9.96164 -9.56541 -9.22184 -8.79750 -8.40082 -8.23779 -7.27441 -6.95507 -4.53953 1.92295 2.40207 2.57716 2.79066 2.94813 2.95415 2.96436 3.02496 3.74731 3.87697 4.35244 4.41707 4.53086 4.59227 4.99320 5.02991 5.26735 5.38473 5.56111 5.57319 5.72992 5.83224 5.92473 6.05767 6.17597 6.20544 6.31525 6.46910 6.53848 6.59029 6.80862 6.85817 6.92459 7.07724 7.15020 7.21548 7.64772 7.82279 7.93593 8.30267 8.54379 8.60315 8.80633 9.38633 9.93518 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.034716 B = 0.003926 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.343335 B = 7130.864728 C = 7761.184898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.017 3.983 3 N -0.488 5.488 4 C 0.152 3.848 5 N -0.464 5.464 6 C 0.053 3.947 7 C 0.106 3.894 8 N -0.468 5.468 9 C 0.148 3.852 10 N -0.307 5.307 11 N -0.294 5.294 12 C 0.191 3.809 13 C 0.142 3.858 14 C -0.142 4.142 15 C -0.118 4.118 16 C 0.063 3.937 17 C -0.442 4.442 18 H 0.086 0.914 19 C 0.074 3.926 20 N -0.787 5.787 21 Si 0.913 3.087 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.262 1.262 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.115 0.885 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.217 0.783 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.553 8.671 3.115 9.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.126 4.126 3 N -0.200 5.200 4 C -0.078 4.078 5 N -0.185 5.185 6 C -0.076 4.076 7 C -0.017 4.017 8 N -0.159 5.159 9 C -0.140 4.140 10 N -0.147 5.147 11 N -0.134 5.134 12 C -0.078 4.078 13 C 0.013 3.987 14 C -0.165 4.165 15 C -0.143 4.143 16 C 0.058 3.942 17 C -0.471 4.471 18 H 0.104 0.896 19 C -0.146 4.146 20 N -0.411 5.411 21 Si 0.737 3.263 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.186 1.186 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.133 0.867 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.233 0.767 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.121 0.879 36 H 0.147 0.853 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.344 9.444 2.517 9.780 hybrid contribution -1.228 -1.496 0.372 1.971 sum -1.571 7.948 2.889 8.601 Atomic orbital electron populations 1.20243 0.91007 1.01194 1.00322 1.20809 0.94862 0.87506 1.09403 1.66587 1.07993 1.31331 1.14118 1.18516 0.88456 0.87598 1.13209 1.59546 1.18459 1.01636 1.38816 1.22196 0.94488 0.87683 1.03201 1.22367 0.84076 1.00149 0.95060 1.46246 1.24294 1.08734 1.36622 1.26127 0.92145 0.94668 1.01082 1.74508 1.20562 1.04790 1.14840 1.73961 1.15166 1.02835 1.21446 1.24824 0.94192 0.93221 0.95544 1.20831 0.96872 0.87417 0.93612 1.20824 0.98543 0.92370 1.04738 1.21323 0.94783 0.96436 1.01807 1.18295 0.92358 0.93114 0.90402 1.19526 1.01709 0.91829 1.34037 0.89628 1.25993 0.94264 1.01822 0.92501 1.69792 1.17409 1.32317 1.21612 0.86277 0.79940 0.80074 0.80056 1.18760 1.20166 1.18640 0.93366 0.93417 0.91323 0.93181 0.86678 0.88623 0.88464 0.76686 0.91111 0.86869 0.87941 0.85288 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 9.58 36.01 0.34 -1.00 16 2 C 0.02 0.38 6.86 -81.79 -0.56 -0.18 16 3 N -0.49 -10.60 8.35 -8.04 -0.07 -10.66 16 4 C 0.15 3.16 6.38 -155.12 -0.99 2.17 16 5 N -0.46 -8.08 4.66 -173.69 -0.81 -8.89 16 6 C 0.05 0.77 4.88 -3.55 -0.02 0.75 16 7 C 0.11 1.15 7.28 -3.91 -0.03 1.13 16 8 N -0.47 -6.34 3.12 -115.46 -0.36 -6.71 16 9 C 0.15 1.87 12.86 -90.59 -1.17 0.71 16 10 N -0.31 -5.14 12.24 29.55 0.36 -4.78 16 11 N -0.29 -5.37 12.20 32.76 0.40 -4.97 16 12 C 0.19 3.14 7.86 -155.28 -1.22 1.92 16 13 C 0.14 2.36 5.45 -4.67 -0.03 2.34 16 14 C -0.14 -3.09 9.21 -39.64 -0.36 -3.45 16 15 C -0.12 -2.80 8.73 -39.01 -0.34 -3.14 16 16 C 0.06 1.53 5.58 -106.65 -0.59 0.94 16 17 C -0.44 -10.49 8.14 -37.85 -0.31 -10.80 16 18 H 0.09 1.92 6.86 -52.49 -0.36 1.56 16 19 C 0.07 1.67 5.19 -17.34 -0.09 1.58 16 20 N -0.79 -18.61 10.95 55.54 0.61 -18.00 16 21 Si 0.91 17.05 29.59 -169.99 -5.03 12.02 16 22 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 23 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 24 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.31 6.76 -51.93 -0.35 0.95 16 28 H 0.05 0.77 8.08 -51.92 -0.42 0.35 16 29 H 0.12 1.73 7.26 -51.93 -0.38 1.36 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.22 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 34 H 0.11 1.86 7.12 -51.93 -0.37 1.49 16 35 H 0.10 2.01 7.22 -52.49 -0.38 1.63 16 36 H 0.13 3.15 6.26 -52.49 -0.33 2.82 16 37 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 LS Contribution 307.03 15.07 4.63 4.63 Total: -1.00 -28.46 307.03 -9.89 -38.35 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -4.25 Total: 6.05 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -5.36 Total: -7.04 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.13 Total: -54.00 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.46 -9.89 -38.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163679085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.875 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds