Wall clock time and date at job start Tue Mar 31 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31480 * 119.81883 * 2 1 4 4 C 1.32740 * 121.72913 * 180.27065 * 3 2 1 5 5 N 1.38377 * 119.43159 * 179.74767 * 4 3 2 6 6 C 1.46974 * 110.99748 * 0.04809 * 5 4 3 7 7 C 1.53460 * 109.73921 * 165.12498 * 6 5 4 8 8 N 1.46311 * 108.17737 * 49.59454 * 7 6 5 9 9 C 1.34417 * 129.75529 * 163.60238 * 8 7 6 10 10 N 1.30921 * 107.02782 * 180.48066 * 9 8 7 11 11 N 1.28977 * 109.75818 * 359.56612 * 10 9 8 12 12 C 1.29628 * 109.47345 * 0.34906 * 11 10 9 13 13 C 1.47386 * 111.00083 * 235.77305 * 5 4 3 14 14 C 1.39702 * 121.14464 * 359.46845 * 4 3 2 15 15 C 1.36570 * 119.48991 * 0.25519 * 14 4 3 16 16 C 1.40760 * 119.81194 * 179.74368 * 2 1 3 17 17 C 1.41200 * 120.57109 * 359.97438 * 16 2 1 18 18 H 1.08002 * 120.00171 * 334.75826 * 17 16 2 19 19 C 1.39869 * 119.99785 * 154.75211 * 17 16 2 20 20 N 1.30894 * 120.00361 * 343.68003 * 19 17 16 21 21 Si 1.86808 * 119.99774 * 163.67986 * 19 17 16 22 22 H 1.48496 * 109.47085 * 60.00313 * 21 19 17 23 23 H 1.48503 * 109.46722 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47075 * 299.99881 * 21 19 17 25 25 H 1.09003 * 109.46632 * 270.25920 * 1 2 3 26 26 H 1.09000 * 109.46553 * 30.25294 * 1 2 3 27 27 H 1.09000 * 109.47172 * 150.25400 * 1 2 3 28 28 H 1.09008 * 109.42200 * 285.20649 * 6 5 4 29 29 H 1.08996 * 109.42556 * 45.09459 * 6 5 4 30 30 H 1.08998 * 109.72481 * 289.92102 * 7 6 5 31 31 H 1.08996 * 109.71692 * 169.26072 * 7 6 5 32 32 H 1.08000 * 126.48640 * 0.22172 * 9 8 7 33 33 H 1.09001 * 109.75471 * 54.57542 * 13 5 4 34 34 H 1.09004 * 109.75185 * 293.83266 * 13 5 4 35 35 H 1.07998 * 120.26407 * 180.28240 * 14 4 3 36 36 H 1.07994 * 120.79720 * 179.97438 * 15 14 4 37 37 H 0.96999 * 120.00120 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1407 0.0000 4 6 3.4875 1.1850 -0.0053 5 7 4.1269 2.4122 -0.0104 6 6 3.1534 3.5132 -0.0076 7 6 3.8576 4.8268 0.3577 8 7 5.0483 4.9554 -0.4828 9 6 5.8045 6.0359 -0.7427 10 7 6.7534 5.6524 -1.5591 11 7 6.6302 4.3933 -1.8101 12 6 5.6013 3.9249 -1.1757 13 6 5.0528 2.5206 -1.1519 14 6 4.2495 0.0141 -0.0001 15 6 3.6199 -1.1978 0.0054 16 6 2.2068 -1.2213 0.0055 17 6 1.5090 -2.4488 0.0115 18 1 0.5068 -2.4983 0.4110 19 6 2.1157 -3.6006 -0.5000 20 7 3.1746 -3.4990 -1.2628 21 14 1.4148 -5.2841 -0.0945 22 1 0.0152 -5.3684 -0.5837 23 1 2.2339 -6.3330 -0.7533 24 1 1.4384 -5.4890 1.3760 25 1 -0.3633 0.0046 1.0277 26 1 -0.3632 0.8877 -0.5178 27 1 -0.3633 -0.8922 -0.5099 28 1 2.7066 3.6045 -0.9978 29 1 2.3730 3.3054 0.7244 30 1 4.1489 4.8084 1.4079 31 1 3.1869 5.6666 0.1761 32 1 5.6548 7.0328 -0.3551 33 1 4.5185 2.3181 -2.0802 34 1 5.8692 1.8082 -1.0330 35 1 5.3282 0.0667 0.0000 36 1 4.1882 -2.1161 0.0090 37 1 3.5950 -4.2978 -1.6178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163679085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:25 Heat of formation + Delta-G solvation = 111.541667 kcal Electronic energy + Delta-G solvation = -21927.358263 eV Core-core repulsion = 18705.559050 eV Total energy + Delta-G solvation = -3221.799213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.31052 -41.00814 -38.74368 -36.14124 -35.34702 -33.27148 -32.84853 -31.66732 -30.72386 -28.74193 -27.48594 -26.00857 -24.73333 -23.48414 -22.63270 -22.03496 -20.76985 -19.18797 -18.54969 -17.80777 -17.37895 -17.21451 -16.57993 -16.21734 -15.86756 -15.57443 -15.30026 -14.86966 -14.66291 -14.43243 -13.83766 -13.79763 -13.50186 -13.38022 -12.96909 -12.90099 -12.83837 -12.67728 -12.55490 -12.38903 -12.24035 -11.68836 -11.48099 -11.22921 -11.10806 -10.57949 -10.24412 -10.10417 -9.96135 -8.95668 -8.64180 -6.31221 0.70844 0.82693 1.01828 1.41463 1.49955 1.53146 1.55504 1.78674 2.19121 2.43519 2.78318 3.17427 3.46392 3.60388 3.73262 3.90239 4.03412 4.16878 4.21571 4.27855 4.51984 4.52428 4.58802 4.63904 4.77732 4.88252 4.88862 5.01988 5.02428 5.06867 5.14711 5.25439 5.41157 5.53914 5.60462 5.89129 5.92961 6.08840 6.25180 6.56873 6.79652 6.86045 7.64209 7.64919 8.26446 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.034716 B = 0.003926 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.343335 B = 7130.864728 C = 7761.184898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.002 3.998 3 N -0.489 5.489 4 C 0.160 3.840 5 N -0.465 5.465 6 C 0.051 3.949 7 C 0.114 3.886 8 N -0.467 5.467 9 C 0.178 3.822 10 N -0.351 5.351 11 N -0.327 5.327 12 C 0.176 3.824 13 C 0.150 3.850 14 C -0.152 4.152 15 C -0.137 4.137 16 C 0.032 3.968 17 C -0.469 4.469 18 H 0.092 0.908 19 C 0.035 3.965 20 N -0.821 5.821 21 Si 0.982 3.018 22 H -0.256 1.256 23 H -0.273 1.273 24 H -0.260 1.260 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.143 0.857 32 H 0.271 0.729 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.597 10.560 4.189 11.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.140 4.140 3 N -0.202 5.202 4 C -0.070 4.070 5 N -0.186 5.186 6 C -0.077 4.077 7 C -0.007 4.007 8 N -0.157 5.157 9 C -0.110 4.110 10 N -0.190 5.190 11 N -0.167 5.167 12 C -0.094 4.094 13 C 0.021 3.979 14 C -0.174 4.174 15 C -0.163 4.163 16 C 0.028 3.972 17 C -0.498 4.498 18 H 0.110 0.890 19 C -0.181 4.181 20 N -0.446 5.446 21 Si 0.803 3.197 22 H -0.180 1.180 23 H -0.197 1.197 24 H -0.184 1.184 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.161 0.839 32 H 0.287 0.713 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.395 11.359 3.593 11.995 hybrid contribution -0.855 -1.889 0.058 2.074 sum -2.250 9.470 3.652 10.396 Atomic orbital electron populations 1.20229 0.88703 1.01692 1.01437 1.21369 0.96655 0.87315 1.08651 1.66726 1.08233 1.30813 1.14458 1.18834 0.88368 0.88820 1.10956 1.59458 1.18873 1.01178 1.39048 1.22282 0.94304 0.88449 1.02625 1.22557 0.83529 0.99288 0.95358 1.46428 1.24818 1.08143 1.36324 1.27116 0.89755 0.95894 0.98276 1.74433 1.22968 1.04300 1.17315 1.73876 1.16242 1.04012 1.22597 1.24553 0.94617 0.93471 0.96761 1.20609 0.96344 0.88283 0.92643 1.21012 0.99443 0.92304 1.04635 1.21320 0.95100 0.96683 1.03222 1.18635 0.92768 0.94269 0.91551 1.19772 1.02322 0.92492 1.35195 0.89019 1.26794 0.94380 1.05101 0.91783 1.69855 1.18734 1.33451 1.22610 0.85234 0.79375 0.75470 0.79660 1.18000 1.19729 1.18446 0.91822 0.92013 0.91609 0.94227 0.87013 0.86833 0.83930 0.71304 0.92316 0.87350 0.86562 0.86767 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.37 9.58 71.24 0.68 -1.68 16 2 C 0.00 0.10 6.86 43.23 0.30 0.39 16 3 N -0.49 -21.13 8.35 -179.36 -1.50 -22.63 16 4 C 0.16 6.69 6.38 133.31 0.85 7.54 16 5 N -0.46 -15.80 4.66 -703.44 -3.28 -19.08 16 6 C 0.05 1.38 4.88 86.44 0.42 1.80 16 7 C 0.11 1.99 7.28 86.57 0.63 2.62 16 8 N -0.47 -11.15 3.12 -519.20 -1.62 -12.77 16 9 C 0.18 3.82 12.86 180.34 2.32 6.14 16 10 N -0.35 -11.14 12.24 -60.44 -0.74 -11.88 16 11 N -0.33 -11.79 12.20 -50.27 -0.61 -12.40 16 12 C 0.18 5.61 7.86 138.12 1.09 6.70 16 13 C 0.15 5.02 5.45 85.49 0.47 5.49 16 14 C -0.15 -6.75 9.21 22.23 0.20 -6.55 16 15 C -0.14 -6.79 8.73 22.64 0.20 -6.59 16 16 C 0.03 1.62 5.58 -21.18 -0.12 1.50 16 17 C -0.47 -22.72 8.14 23.39 0.19 -22.53 16 18 H 0.09 4.16 6.86 -2.91 -0.02 4.14 16 19 C 0.04 1.64 5.19 85.23 0.44 2.08 16 20 N -0.82 -40.08 10.95 21.82 0.24 -39.84 16 21 Si 0.98 35.09 29.59 68.60 2.03 37.12 16 22 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 23 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 24 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 25 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.07 2.48 6.76 -2.39 -0.02 2.46 16 28 H 0.04 1.16 8.08 -2.38 -0.02 1.14 16 29 H 0.11 3.12 7.26 -2.39 -0.02 3.10 16 30 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.27 2.38 8.06 -2.91 -0.02 2.35 16 33 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 34 H 0.11 3.65 7.12 -2.38 -0.02 3.63 16 35 H 0.12 4.69 7.22 -2.91 -0.02 4.67 16 36 H 0.11 5.89 6.26 -2.91 -0.02 5.87 16 37 H 0.29 12.93 8.30 -92.71 -0.77 12.16 16 Total: -1.00 -64.32 307.03 3.29 -61.03 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 1.10 Total: 23.54 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 7.67 Total: -3.09 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -7.51 Total: -118.60 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 2.03 Total: 37.12 kcal Total: -64.32 3.29 -61.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163679085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.572 kcal (2) G-P(sol) polarization free energy of solvation -64.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds