Wall clock time and date at job start Tue Mar 31 2020 05:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38687 * 119.27558 * 2 1 4 4 C 1.38011 * 119.62495 * 180.02562 * 3 2 1 5 5 C 1.41004 * 118.28144 * 359.97438 * 4 3 2 6 6 C 1.41019 * 120.70267 * 179.97438 * 5 4 3 7 7 H 1.07994 * 119.99895 * 211.06828 * 6 5 4 8 8 C 1.39953 * 119.99672 * 31.07538 * 6 5 4 9 9 N 1.30862 * 120.00378 * 25.43859 * 8 6 5 10 10 Si 1.86805 * 119.99569 * 205.16582 * 8 6 5 11 11 H 1.48500 * 109.47134 * 180.27147 * 10 8 6 12 12 H 1.48500 * 109.47304 * 300.27800 * 10 8 6 13 13 H 1.48510 * 109.46735 * 60.27531 * 10 8 6 14 14 C 1.41703 * 118.58734 * 0.25223 * 5 4 3 15 15 N 1.38090 * 119.90284 * 179.74816 * 14 5 4 16 16 C 1.46967 * 111.00075 * 196.83424 * 15 14 5 17 17 C 1.53459 * 109.75119 * 165.13975 * 16 15 14 18 18 N 1.46313 * 108.18310 * 49.57421 * 17 16 15 19 19 C 1.34414 * 129.75415 * 163.60521 * 18 17 16 20 20 N 1.30923 * 107.02892 * 180.29777 * 19 18 17 21 21 N 1.28981 * 109.75524 * 359.92959 * 20 19 18 22 22 C 1.29632 * 109.47719 * 359.95276 * 21 20 19 23 23 C 1.47389 * 111.00241 * 72.55363 * 15 14 5 24 24 N 1.31973 * 119.27734 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47705 * 89.99774 * 1 2 3 26 26 H 1.08999 * 109.46900 * 210.00626 * 1 2 3 27 27 H 1.09005 * 109.47018 * 329.99380 * 1 2 3 28 28 H 1.08000 * 120.18338 * 0.04221 * 3 2 1 29 29 H 1.07995 * 120.85223 * 180.02562 * 4 3 2 30 30 H 0.96999 * 120.00083 * 5.50920 * 9 8 6 31 31 H 1.09007 * 109.42592 * 285.21223 * 16 15 14 32 32 H 1.09004 * 109.42809 * 45.04429 * 16 15 14 33 33 H 1.09002 * 109.69399 * 289.91603 * 17 16 15 34 34 H 1.08997 * 109.77538 * 169.28334 * 17 16 15 35 35 H 1.07993 * 126.48755 * 0.29117 * 19 18 17 36 36 H 1.08997 * 109.75208 * 293.84253 * 23 15 14 37 37 H 1.09008 * 109.74898 * 54.52952 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5653 1.2182 -0.0005 5 6 4.2409 -0.0195 -0.0005 6 6 5.6502 -0.0705 -0.0016 7 1 6.1604 -0.8908 -0.4843 8 6 6.3874 0.9420 0.6230 9 7 5.8537 1.6345 1.5967 10 14 8.1361 1.2995 0.0719 11 1 8.6968 2.4046 0.8901 12 1 8.9689 0.0825 0.2464 13 1 8.1327 1.6959 -1.3594 14 6 3.4737 -1.2108 -0.0054 15 7 4.1074 -2.4377 -0.0108 16 6 3.1822 -3.5066 -0.4125 17 6 3.9745 -4.7719 -0.7679 18 7 4.9163 -5.0412 0.3189 19 6 5.5976 -6.1633 0.6076 20 7 6.3073 -5.9159 1.6796 21 7 6.1028 -4.7029 2.0674 22 6 5.2615 -4.1287 1.2656 23 6 4.7166 -2.7234 1.3005 24 7 2.1524 -1.1512 -0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5140 28 1 1.6364 2.1399 0.0007 29 1 4.1134 2.1486 -0.0001 30 1 4.9785 1.3948 1.9393 31 1 2.5011 -3.7248 0.4102 32 1 2.6084 -3.1823 -1.2807 33 1 4.5211 -4.6139 -1.6976 34 1 3.2924 -5.6145 -0.8809 35 1 5.5656 -7.0931 0.0592 36 1 5.5261 -2.0190 1.4919 37 1 3.9625 -2.6393 2.0832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163679348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:29 Heat of formation + Delta-G solvation = 119.592929 kcal Electronic energy + Delta-G solvation = -22567.573942 eV Core-core repulsion = 19346.123858 eV Total energy + Delta-G solvation = -3221.450084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.00253 -39.46263 -37.15094 -34.72240 -34.30858 -31.49107 -30.98794 -30.14882 -29.28442 -27.63695 -25.69326 -24.09107 -23.45513 -22.24217 -21.09824 -20.70021 -19.36401 -18.09757 -17.25628 -16.48683 -15.76109 -15.52079 -14.96796 -14.67522 -14.53667 -14.05466 -13.87312 -13.45795 -13.28650 -12.95147 -12.66215 -12.47931 -11.99414 -11.81703 -11.59034 -11.51690 -11.35950 -11.11421 -11.06984 -10.93852 -10.47857 -10.17421 -9.94760 -9.84812 -9.31168 -9.16244 -8.79703 -8.45358 -8.30095 -7.53975 -7.20126 -4.61823 2.07928 2.33097 2.57331 2.70682 3.11523 3.12664 3.17044 3.30063 3.90513 4.00756 4.38440 4.53491 4.62971 4.70854 5.03837 5.11950 5.25301 5.43413 5.48888 5.69285 5.82371 5.83586 5.97910 6.04983 6.07996 6.18712 6.26302 6.31379 6.39091 6.45779 6.59284 6.76828 7.03096 7.08723 7.20842 7.41790 7.54738 7.74406 7.80497 8.02604 8.51522 8.58322 8.97216 9.25698 9.84402 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.007861 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.285750 B = 3561.220685 C = 5437.317756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.010 4.010 3 C -0.131 4.131 4 C -0.176 4.176 5 C 0.067 3.933 6 C -0.489 4.489 7 H 0.090 0.910 8 C 0.038 3.962 9 N -0.784 5.784 10 Si 1.062 2.938 11 H -0.273 1.273 12 H -0.272 1.272 13 H -0.274 1.274 14 C 0.163 3.837 15 N -0.451 5.451 16 C 0.053 3.947 17 C 0.108 3.892 18 N -0.469 5.469 19 C 0.144 3.856 20 N -0.307 5.307 21 N -0.294 5.294 22 C 0.198 3.802 23 C 0.144 3.856 24 N -0.483 5.483 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.297 0.703 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.215 0.785 36 H 0.129 0.871 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.335 -6.635 -4.909 9.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.149 4.149 3 C -0.152 4.152 4 C -0.202 4.202 5 C 0.060 3.940 6 C -0.517 4.517 7 H 0.108 0.892 8 C -0.185 4.185 9 N -0.405 5.405 10 Si 0.885 3.115 11 H -0.197 1.197 12 H -0.197 1.197 13 H -0.199 1.199 14 C -0.070 4.070 15 N -0.171 5.171 16 C -0.075 4.075 17 C -0.015 4.015 18 N -0.160 5.160 19 C -0.144 4.144 20 N -0.147 5.147 21 N -0.134 5.134 22 C -0.071 4.071 23 C 0.015 3.985 24 N -0.195 5.195 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.132 0.868 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.232 0.768 36 H 0.146 0.854 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.221 -6.578 -3.806 7.918 hybrid contribution -2.403 -0.194 -1.002 2.611 sum -4.624 -6.772 -4.808 9.506 Atomic orbital electron populations 1.20262 0.91366 1.00937 1.00432 1.19975 0.94608 0.87957 1.12319 1.21347 0.94924 0.97222 1.01691 1.21380 0.93159 0.97560 1.08110 1.17980 0.94167 0.89855 0.91975 1.20488 0.91024 1.09188 1.30953 0.89214 1.27123 1.06930 0.91550 0.92904 1.70509 1.18627 1.34913 1.16481 0.83663 0.72852 0.77850 0.77180 1.19728 1.19695 1.19889 1.19065 0.87101 0.88798 1.12082 1.59170 1.31585 1.00422 1.25958 1.22182 0.93263 0.89284 1.02784 1.22305 0.91082 0.99246 0.88884 1.46213 1.34697 1.11032 1.24101 1.26076 0.96292 0.93180 0.98859 1.74500 1.21007 1.08677 1.10538 1.73970 1.14778 1.01160 1.23494 1.24923 0.98158 0.95111 0.88894 1.20715 1.00343 0.87087 0.90339 1.66673 1.09725 1.30398 1.12753 0.93200 0.92752 0.92785 0.88050 0.86832 0.88996 0.93092 0.87916 0.88719 0.88653 0.76828 0.85351 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.15 36.00 0.37 -0.81 16 2 C -0.01 -0.21 6.79 -82.37 -0.56 -0.77 16 3 C -0.13 -2.75 9.69 -39.50 -0.38 -3.14 16 4 C -0.18 -4.07 8.16 -38.62 -0.32 -4.39 16 5 C 0.07 1.59 5.10 -106.47 -0.54 1.05 16 6 C -0.49 -11.66 6.82 -37.89 -0.26 -11.92 16 7 H 0.09 2.18 7.78 -52.49 -0.41 1.77 16 8 C 0.04 0.89 4.93 -17.32 -0.09 0.80 16 9 N -0.78 -19.18 12.57 55.55 0.70 -18.49 16 10 Si 1.06 20.56 30.00 -169.99 -5.10 15.46 16 11 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 12 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 13 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 14 C 0.16 3.62 5.99 -155.03 -0.93 2.69 16 15 N -0.45 -8.82 4.09 -173.25 -0.71 -9.53 16 16 C 0.05 0.84 4.74 -3.55 -0.02 0.83 16 17 C 0.11 1.33 7.28 -3.91 -0.03 1.30 16 18 N -0.47 -7.19 3.12 -115.46 -0.36 -7.55 16 19 C 0.14 2.05 12.86 -90.59 -1.17 0.89 16 20 N -0.31 -5.68 12.24 29.54 0.36 -5.32 16 21 N -0.29 -6.02 12.20 32.76 0.40 -5.62 16 22 C 0.20 3.73 7.86 -155.28 -1.22 2.50 16 23 C 0.14 2.84 5.53 -4.67 -0.03 2.82 16 24 N -0.48 -10.39 8.73 -8.11 -0.07 -10.46 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 28 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.11 2.68 7.04 -52.49 -0.37 2.31 16 30 H 0.30 7.46 6.95 -40.82 -0.28 7.18 16 31 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 32 H 0.10 1.62 7.67 -51.93 -0.40 1.22 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.22 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.13 2.81 6.52 -51.93 -0.34 2.47 16 37 H 0.06 1.26 8.12 -51.92 -0.42 0.83 16 LS Contribution 309.08 15.07 4.66 4.66 Total: -1.00 -28.37 309.08 -9.68 -38.05 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -4.39 Total: 6.94 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -5.16 Total: -8.14 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.32 Total: -56.98 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.10 Total: 15.46 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.37 -9.68 -38.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163679348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.644 kcal (2) G-P(sol) polarization free energy of solvation -28.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds