Wall clock time and date at job start Tue Mar 31 2020 05:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38687 * 119.27558 * 2 1 4 4 C 1.38011 * 119.62495 * 180.02562 * 3 2 1 5 5 C 1.41004 * 118.28144 * 359.97438 * 4 3 2 6 6 C 1.41019 * 120.70267 * 179.97438 * 5 4 3 7 7 H 1.07994 * 119.99895 * 211.06828 * 6 5 4 8 8 C 1.39953 * 119.99672 * 31.07538 * 6 5 4 9 9 N 1.30862 * 120.00378 * 25.43859 * 8 6 5 10 10 Si 1.86805 * 119.99569 * 205.16582 * 8 6 5 11 11 H 1.48500 * 109.47134 * 180.27147 * 10 8 6 12 12 H 1.48500 * 109.47304 * 300.27800 * 10 8 6 13 13 H 1.48510 * 109.46735 * 60.27531 * 10 8 6 14 14 C 1.41703 * 118.58734 * 0.25223 * 5 4 3 15 15 N 1.38090 * 119.90284 * 179.74816 * 14 5 4 16 16 C 1.46967 * 111.00075 * 196.83424 * 15 14 5 17 17 C 1.53459 * 109.75119 * 165.13975 * 16 15 14 18 18 N 1.46313 * 108.18310 * 49.57421 * 17 16 15 19 19 C 1.34414 * 129.75415 * 163.60521 * 18 17 16 20 20 N 1.30923 * 107.02892 * 180.29777 * 19 18 17 21 21 N 1.28981 * 109.75524 * 359.92959 * 20 19 18 22 22 C 1.29632 * 109.47719 * 359.95276 * 21 20 19 23 23 C 1.47389 * 111.00241 * 72.55363 * 15 14 5 24 24 N 1.31973 * 119.27734 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47705 * 89.99774 * 1 2 3 26 26 H 1.08999 * 109.46900 * 210.00626 * 1 2 3 27 27 H 1.09005 * 109.47018 * 329.99380 * 1 2 3 28 28 H 1.08000 * 120.18338 * 0.04221 * 3 2 1 29 29 H 1.07995 * 120.85223 * 180.02562 * 4 3 2 30 30 H 0.96999 * 120.00083 * 5.50920 * 9 8 6 31 31 H 1.09007 * 109.42592 * 285.21223 * 16 15 14 32 32 H 1.09004 * 109.42809 * 45.04429 * 16 15 14 33 33 H 1.09002 * 109.69399 * 289.91603 * 17 16 15 34 34 H 1.08997 * 109.77538 * 169.28334 * 17 16 15 35 35 H 1.07993 * 126.48755 * 0.29117 * 19 18 17 36 36 H 1.08997 * 109.75208 * 293.84253 * 23 15 14 37 37 H 1.09008 * 109.74898 * 54.52952 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5653 1.2182 -0.0005 5 6 4.2409 -0.0195 -0.0005 6 6 5.6502 -0.0705 -0.0016 7 1 6.1604 -0.8908 -0.4843 8 6 6.3874 0.9420 0.6230 9 7 5.8537 1.6345 1.5967 10 14 8.1361 1.2995 0.0719 11 1 8.6968 2.4046 0.8901 12 1 8.9689 0.0825 0.2464 13 1 8.1327 1.6959 -1.3594 14 6 3.4737 -1.2108 -0.0054 15 7 4.1074 -2.4377 -0.0108 16 6 3.1822 -3.5066 -0.4125 17 6 3.9745 -4.7719 -0.7679 18 7 4.9163 -5.0412 0.3189 19 6 5.5976 -6.1633 0.6076 20 7 6.3073 -5.9159 1.6796 21 7 6.1028 -4.7029 2.0674 22 6 5.2615 -4.1287 1.2656 23 6 4.7166 -2.7234 1.3005 24 7 2.1524 -1.1512 -0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5140 28 1 1.6364 2.1399 0.0007 29 1 4.1134 2.1486 -0.0001 30 1 4.9785 1.3948 1.9393 31 1 2.5011 -3.7248 0.4102 32 1 2.6084 -3.1823 -1.2807 33 1 4.5211 -4.6139 -1.6976 34 1 3.2924 -5.6145 -0.8809 35 1 5.5656 -7.0931 0.0592 36 1 5.5261 -2.0190 1.4919 37 1 3.9625 -2.6393 2.0832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163679348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:28 Heat of formation + Delta-G solvation = 104.573131 kcal Electronic energy + Delta-G solvation = -22568.225250 eV Core-core repulsion = 19346.123858 eV Total energy + Delta-G solvation = -3222.101392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.31147 -41.10479 -38.63497 -36.43163 -35.68444 -32.96501 -32.66705 -31.59064 -30.64133 -29.25144 -27.18792 -25.64864 -24.89161 -23.51473 -22.72222 -22.32533 -20.74285 -19.86102 -18.53929 -17.78985 -17.24398 -17.08017 -16.41823 -16.31375 -15.87900 -15.63065 -15.23708 -14.85872 -14.76908 -14.53841 -14.35751 -13.78914 -13.58803 -13.28665 -13.02630 -12.93385 -12.77033 -12.67334 -12.50910 -12.40832 -12.01267 -11.57827 -11.49257 -11.14474 -11.03795 -10.69081 -10.29054 -10.17621 -9.99113 -9.33089 -8.90217 -6.43311 0.59124 0.80751 0.83164 1.50540 1.53321 1.60250 1.76726 1.78569 2.29501 2.48554 2.68782 3.19960 3.38246 3.49215 3.70810 3.87535 4.00774 4.13198 4.18423 4.28071 4.29512 4.49316 4.53843 4.63426 4.75708 4.78926 4.85411 4.88253 4.94366 5.02275 5.05465 5.21015 5.36510 5.52023 5.73527 5.80901 5.90928 5.96099 6.07492 6.29135 6.76745 6.81556 7.53148 7.64804 8.00144 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.007861 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.285750 B = 3561.220685 C = 5437.317756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.007 4.007 3 C -0.138 4.138 4 C -0.190 4.190 5 C 0.040 3.960 6 C -0.509 4.509 7 H 0.077 0.923 8 C 0.009 3.991 9 N -0.808 5.808 10 Si 1.105 2.895 11 H -0.272 1.272 12 H -0.267 1.267 13 H -0.261 1.261 14 C 0.163 3.837 15 N -0.458 5.458 16 C 0.053 3.947 17 C 0.113 3.887 18 N -0.466 5.466 19 C 0.177 3.823 20 N -0.351 5.351 21 N -0.329 5.329 22 C 0.179 3.821 23 C 0.159 3.841 24 N -0.489 5.489 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.130 0.870 29 H 0.100 0.900 30 H 0.281 0.719 31 H 0.043 0.957 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.147 0.853 35 H 0.274 0.726 36 H 0.096 0.904 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.834 -8.552 -6.753 12.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.146 4.146 3 C -0.159 4.159 4 C -0.216 4.216 5 C 0.033 3.967 6 C -0.538 4.538 7 H 0.095 0.905 8 C -0.209 4.209 9 N -0.431 5.431 10 Si 0.924 3.076 11 H -0.196 1.196 12 H -0.192 1.192 13 H -0.185 1.185 14 C -0.071 4.071 15 N -0.179 5.179 16 C -0.075 4.075 17 C -0.008 4.008 18 N -0.156 5.156 19 C -0.111 4.111 20 N -0.190 5.190 21 N -0.169 5.169 22 C -0.091 4.091 23 C 0.030 3.970 24 N -0.202 5.202 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.148 0.852 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.165 0.835 35 H 0.290 0.710 36 H 0.114 0.886 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.739 -8.515 -5.666 10.890 hybrid contribution -2.156 0.297 -0.488 2.231 sum -5.896 -8.217 -6.154 11.839 Atomic orbital electron populations 1.20340 0.87784 1.02348 1.02107 1.20863 0.97047 0.87484 1.09215 1.21676 0.94187 0.98893 1.01118 1.21420 0.94341 0.96948 1.08890 1.18291 0.94669 0.90952 0.92759 1.20392 0.91372 1.09587 1.32401 0.90512 1.28192 1.09520 0.91089 0.92096 1.70614 1.18224 1.36353 1.17906 0.83120 0.69317 0.77782 0.77408 1.19642 1.19165 1.18526 1.19315 0.87441 0.89560 1.10736 1.59100 1.32467 1.00739 1.25560 1.22283 0.93174 0.89655 1.02349 1.22559 0.91174 0.99066 0.88002 1.46396 1.34895 1.10503 1.23845 1.27136 0.93032 0.93944 0.96952 1.74418 1.23392 1.08085 1.13072 1.73881 1.15703 1.02451 1.24902 1.24525 0.99045 0.95082 0.90463 1.20277 0.98914 0.87646 0.90118 1.66857 1.09235 1.30830 1.13307 0.91235 0.92173 0.90604 0.85235 0.88235 0.90685 0.93859 0.87691 0.87180 0.83531 0.71019 0.88562 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.99 10.15 71.24 0.72 -1.27 16 2 C -0.01 -0.28 6.79 42.64 0.29 0.01 16 3 C -0.14 -5.72 9.69 22.32 0.22 -5.50 16 4 C -0.19 -9.03 8.16 22.89 0.19 -8.84 16 5 C 0.04 1.96 5.10 -21.06 -0.11 1.85 16 6 C -0.51 -25.54 6.82 23.37 0.16 -25.38 16 7 H 0.08 3.93 7.78 -2.91 -0.02 3.91 16 8 C 0.01 0.42 4.93 85.25 0.42 0.84 16 9 N -0.81 -41.71 12.57 21.83 0.27 -41.44 16 10 Si 1.11 42.82 30.00 68.60 2.06 44.88 16 11 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 12 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 13 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 14 C 0.16 7.34 5.99 134.05 0.80 8.15 16 15 N -0.46 -18.10 4.09 -702.05 -2.87 -20.97 16 16 C 0.05 1.58 4.74 86.44 0.41 1.99 16 17 C 0.11 2.34 7.28 86.57 0.63 2.97 16 18 N -0.47 -13.05 3.12 -519.20 -1.62 -14.67 16 19 C 0.18 4.43 12.86 180.34 2.32 6.75 16 20 N -0.35 -12.52 12.24 -60.44 -0.74 -13.26 16 21 N -0.33 -13.66 12.20 -50.27 -0.61 -14.27 16 22 C 0.18 6.76 7.86 138.12 1.09 7.85 16 23 C 0.16 6.59 5.53 85.49 0.47 7.06 16 24 N -0.49 -20.71 8.73 -179.57 -1.57 -22.28 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 1.91 8.07 -2.38 -0.02 1.89 16 28 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 29 H 0.10 4.93 7.04 -2.91 -0.02 4.91 16 30 H 0.28 15.09 6.95 -92.71 -0.64 14.44 16 31 H 0.04 1.36 8.08 -2.38 -0.02 1.34 16 32 H 0.10 3.09 7.67 -2.38 -0.02 3.07 16 33 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.27 3.12 8.06 -2.91 -0.02 3.09 16 36 H 0.10 4.57 6.52 -2.39 -0.02 4.55 16 37 H 0.05 2.07 8.12 -2.38 -0.02 2.05 16 Total: -1.00 -66.18 309.08 3.75 -62.43 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 1.22 Total: 23.11 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 7.61 Total: -3.54 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -7.14 Total: -126.89 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.06 Total: 44.88 kcal Total: -66.18 3.75 -62.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163679348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.004 kcal (2) G-P(sol) polarization free energy of solvation -66.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds