Wall clock time and date at job start Tue Mar 31 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30867 * 125.74778 * 2 1 4 4 C 1.34505 * 109.34061 * 179.88519 * 3 2 1 5 5 C 1.33665 * 107.79160 * 359.97438 * 4 3 2 6 6 N 1.34139 * 125.74444 * 179.97438 * 2 1 3 7 7 C 1.46532 * 129.34268 * 0.32612 * 6 2 1 8 8 C 1.53432 * 108.13336 * 163.42288 * 7 6 2 9 9 N 1.46940 * 109.87271 * 50.06170 * 8 7 6 10 10 C 1.38831 * 110.99418 * 164.62597 * 9 8 7 11 11 C 1.39958 * 119.97492 * 359.72350 * 10 9 8 12 12 N 1.32131 * 120.32058 * 179.75041 * 11 10 9 13 13 C 1.31924 * 120.26742 * 0.52783 * 12 11 10 14 14 C 1.40682 * 119.94033 * 359.73228 * 13 12 11 15 15 C 1.41267 * 120.16247 * 179.97438 * 14 13 12 16 16 H 1.08008 * 120.00062 * 353.82534 * 15 14 13 17 17 C 1.40057 * 120.00478 * 173.83051 * 15 14 13 18 18 N 1.30731 * 119.99522 * 6.32515 * 17 15 14 19 19 Si 1.86795 * 120.00086 * 186.32945 * 17 15 14 20 20 H 1.48493 * 109.47408 * 59.99739 * 19 17 15 21 21 H 1.48507 * 109.47081 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47071 * 299.99706 * 19 17 15 23 23 N 1.32242 * 119.96795 * 180.02562 * 10 9 8 24 24 C 1.47366 * 111.31689 * 288.82778 * 9 8 7 25 25 H 1.08998 * 109.47745 * 90.02382 * 1 2 3 26 26 H 1.09000 * 109.47327 * 210.02645 * 1 2 3 27 27 H 1.09001 * 109.47226 * 330.02043 * 1 2 3 28 28 H 1.07992 * 126.10196 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.73008 * 283.07992 * 7 6 2 30 30 H 1.08996 * 109.72846 * 43.71722 * 7 6 2 31 31 H 1.08997 * 109.40442 * 170.18923 * 8 7 6 32 32 H 1.09005 * 109.39982 * 290.01995 * 8 7 6 33 33 H 1.08007 * 119.83755 * 0.02562 * 11 10 9 34 34 H 1.08000 * 120.03410 * 179.70507 * 13 12 11 35 35 H 0.97000 * 119.99570 * 179.97438 * 18 17 15 36 36 H 1.08995 * 109.71326 * 290.30726 * 24 9 8 37 37 H 1.08996 * 109.78876 * 169.54100 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2715 1.0621 0.0000 4 6 3.5617 0.6822 0.0025 5 6 3.5940 -0.6541 0.0047 6 7 2.2905 -1.0887 0.0005 7 6 1.9134 -2.5047 -0.0053 8 6 3.1429 -3.3246 -0.4180 9 7 4.3036 -2.9254 0.3898 10 6 5.3239 -3.8617 0.2912 11 6 5.1517 -5.0028 -0.5008 12 7 6.1201 -5.8959 -0.6034 13 6 7.2542 -5.7248 0.0484 14 6 7.4372 -4.5846 0.8520 15 6 8.6495 -4.3970 1.5524 16 1 9.3990 -5.1747 1.5527 17 6 8.8797 -3.2025 2.2466 18 7 7.9273 -2.3131 2.3506 19 14 10.5475 -2.8804 3.0237 20 1 11.5946 -2.8909 1.9708 21 1 10.5336 -1.5554 3.6942 22 1 10.8404 -3.9386 4.0236 23 7 6.4553 -3.6777 0.9506 24 6 4.7807 -1.5824 0.0151 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3634 0.8902 0.5135 28 1 4.4186 1.3395 0.0028 29 1 1.5897 -2.8034 0.9917 30 1 1.1055 -2.6673 -0.7186 31 1 2.9404 -4.3842 -0.2623 32 1 3.3587 -3.1482 -1.4718 33 1 4.2245 -5.1518 -1.0342 34 1 8.0414 -6.4595 -0.0344 35 1 8.0866 -1.4860 2.8317 36 1 5.2317 -1.6159 -0.9766 37 1 5.5140 -1.2350 0.7429 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165384169.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:09 Heat of formation + Delta-G solvation = 126.244926 kcal Electronic energy + Delta-G solvation = -22173.364893 eV Core-core repulsion = 18952.203261 eV Total energy + Delta-G solvation = -3221.161632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.18415 -39.50992 -37.18134 -34.13906 -33.86517 -32.16640 -31.66359 -29.75534 -29.56030 -27.17339 -26.15694 -24.48026 -23.40353 -22.05500 -20.96072 -20.47603 -18.85707 -17.74944 -16.68350 -16.36879 -16.12809 -15.54251 -15.02528 -14.86642 -14.62900 -14.02234 -13.83616 -13.48975 -13.22609 -13.10882 -12.81188 -12.65115 -12.38207 -12.20898 -11.75819 -11.54920 -11.45776 -11.40680 -11.15728 -10.81526 -10.52102 -9.98566 -9.81666 -9.69899 -9.57233 -9.32300 -8.62491 -7.99164 -7.65558 -7.23147 -6.58722 -4.81474 2.22388 2.36766 2.82693 2.92614 2.98246 2.99570 3.11203 3.29736 3.77925 3.93669 4.50893 4.54389 4.59719 4.80294 5.00698 5.07580 5.18410 5.41537 5.43982 5.56076 5.62314 5.62695 5.71644 5.85725 5.86908 5.93442 6.11510 6.20950 6.28226 6.45402 6.68933 6.80930 6.91675 6.94232 7.27138 7.29715 7.40669 7.70498 7.94597 8.25842 8.35108 8.56959 9.16537 9.73245 10.03064 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.020006 B = 0.005072 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.241769 B = 5519.642115 C = 6723.724304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.198 3.802 3 N -0.496 5.496 4 C -0.022 4.022 5 C -0.011 4.011 6 N -0.449 5.449 7 C 0.110 3.890 8 C 0.042 3.958 9 N -0.475 5.475 10 C 0.289 3.711 11 C -0.164 4.164 12 N -0.414 5.414 13 C -0.082 4.082 14 C 0.226 3.774 15 C -0.406 4.406 16 H 0.093 0.907 17 C 0.066 3.934 18 N -0.702 5.702 19 Si 0.913 3.087 20 H -0.262 1.262 21 H -0.275 1.275 22 H -0.263 1.263 23 N -0.463 5.463 24 C 0.147 3.853 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.170 0.830 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.052 0.948 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.279 0.721 36 H 0.053 0.947 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.177 2.986 -2.784 10.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 N -0.216 5.216 4 C -0.170 4.170 5 C -0.126 4.126 6 N -0.134 5.134 7 C -0.012 4.012 8 C -0.086 4.086 9 N -0.193 5.193 10 C 0.047 3.953 11 C -0.324 4.324 12 N -0.125 5.125 13 C -0.253 4.253 14 C 0.099 3.901 15 C -0.438 4.438 16 H 0.111 0.889 17 C -0.162 4.162 18 N -0.322 5.322 19 Si 0.737 3.263 20 H -0.187 1.187 21 H -0.200 1.200 22 H -0.187 1.187 23 N -0.184 5.184 24 C 0.020 3.980 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.187 0.813 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.795 3.935 -2.208 10.785 hybrid contribution 1.206 -0.752 -0.247 1.442 sum -8.590 3.183 -2.455 9.484 Atomic orbital electron populations 1.20100 0.85232 1.03730 1.03072 1.22983 0.95446 0.81447 1.06502 1.70467 1.01878 1.28020 1.21281 1.21675 0.94697 0.91808 1.08779 1.21345 0.85322 0.95547 1.10376 1.45222 1.06388 1.07156 1.54612 1.22139 0.98164 0.77390 1.03552 1.22504 0.89586 1.00626 0.95895 1.58323 1.06104 1.02220 1.52676 1.20524 0.91341 0.91289 0.92194 1.22565 1.00844 0.98303 1.10739 1.67563 1.00351 1.27291 1.17321 1.23069 0.96400 1.01023 1.04810 1.19210 0.92117 0.87765 0.91005 1.19654 0.99578 1.00883 1.23695 0.88942 1.26154 0.98727 0.95828 0.95488 1.70065 1.31556 1.05320 1.25249 0.86275 0.81564 0.78628 0.79862 1.18670 1.19990 1.18698 1.69167 0.98719 1.30441 1.20119 1.20703 0.92171 0.83857 1.01254 0.90542 0.91085 0.89418 0.81310 0.89076 0.88812 0.87391 0.92946 0.85573 0.84897 0.90964 0.92887 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.27 36.00 0.37 -0.24 16 2 C 0.20 2.91 7.96 -155.93 -1.24 1.67 16 3 N -0.50 -8.51 11.27 -11.09 -0.13 -8.63 16 4 C -0.02 -0.38 11.85 -17.98 -0.21 -0.60 16 5 C -0.01 -0.19 6.67 -81.71 -0.54 -0.74 16 6 N -0.45 -6.81 3.14 -109.36 -0.34 -7.15 16 7 C 0.11 1.35 6.94 -3.80 -0.03 1.32 16 8 C 0.04 0.63 4.30 -3.58 -0.02 0.62 16 9 N -0.47 -9.25 4.72 -173.73 -0.82 -10.07 16 10 C 0.29 6.66 6.44 -155.01 -1.00 5.66 16 11 C -0.16 -3.68 10.03 -16.78 -0.17 -3.85 16 12 N -0.41 -9.99 10.47 -12.11 -0.13 -10.12 16 13 C -0.08 -2.01 10.97 -16.59 -0.18 -2.19 16 14 C 0.23 5.87 6.54 -84.84 -0.55 5.32 16 15 C -0.41 -10.07 9.15 -37.75 -0.35 -10.42 16 16 H 0.09 2.09 7.86 -52.48 -0.41 1.68 16 17 C 0.07 1.54 5.49 -17.34 -0.10 1.45 16 18 N -0.70 -17.30 11.51 55.55 0.64 -16.66 16 19 Si 0.91 17.29 29.56 -169.99 -5.03 12.27 16 20 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 21 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 23 N -0.46 -12.00 7.59 -10.14 -0.08 -12.08 16 24 C 0.15 2.78 5.60 -4.73 -0.03 2.76 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.55 8.00 -51.93 -0.42 0.14 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.17 2.53 8.06 -52.49 -0.42 2.11 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.11 1.51 6.24 -51.93 -0.32 1.18 16 32 H 0.05 0.77 8.06 -51.93 -0.42 0.35 16 33 H 0.13 2.42 5.73 -52.48 -0.30 2.12 16 34 H 0.13 2.94 8.06 -52.49 -0.42 2.52 16 35 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 36 H 0.05 1.01 8.12 -51.93 -0.42 0.59 16 37 H 0.12 2.62 7.98 -51.93 -0.41 2.20 16 LS Contribution 310.74 15.07 4.68 4.68 Total: -1.00 -30.69 310.74 -9.61 -40.31 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.38 Total: 6.69 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -4.04 Total: 0.76 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: -0.85 Total: -64.71 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.69 -9.61 -40.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165384169.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.552 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds