Wall clock time and date at job start Tue Mar 31 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47343 * 2 1 4 4 N 1.31583 * 119.86426 * 85.45037 * 3 2 1 5 5 C 1.33181 * 120.08982 * 179.97438 * 4 3 2 6 6 C 1.43195 * 120.08950 * 179.97438 * 5 4 3 7 7 N 5.84451 * 103.23885 * 36.23171 * 2 1 3 8 8 C 1.40623 * 119.82103 * 0.02562 * 5 4 3 9 9 C 1.43204 * 120.12881 * 179.97438 * 8 5 4 10 10 N 6.76657 * 109.52926 * 359.33324 * 2 1 3 11 11 N 1.32999 * 119.74135 * 0.25110 * 8 5 4 12 12 C 1.32493 * 119.91080 * 359.49785 * 11 8 5 13 13 N 1.38596 * 119.91545 * 180.22837 * 12 11 8 14 14 C 1.46909 * 110.99835 * 60.34622 * 13 12 11 15 15 C 1.53004 * 109.46871 * 74.99467 * 14 13 12 16 16 C 1.46893 * 111.00184 * 296.39169 * 13 12 11 17 17 C 1.50699 * 109.47414 * 189.99834 * 16 13 12 18 18 H 1.08001 * 119.99932 * 359.97438 * 17 16 13 19 19 C 1.37875 * 120.00383 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99713 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00220 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46904 * 90.00210 * 21 19 17 23 23 H 1.48499 * 109.47188 * 210.00057 * 21 19 17 24 24 H 1.48499 * 109.47110 * 330.00280 * 21 19 17 25 25 H 1.09004 * 109.47510 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46931 * 299.99337 * 1 2 3 27 27 H 1.08998 * 109.47737 * 59.99057 * 1 2 3 28 28 H 1.09008 * 109.46931 * 240.00663 * 2 1 3 29 29 H 1.08998 * 109.47737 * 120.00943 * 2 1 3 30 30 H 1.08996 * 109.46673 * 194.99206 * 14 13 12 31 31 H 1.08999 * 109.46729 * 314.99714 * 14 13 12 32 32 H 1.08994 * 109.46529 * 174.74766 * 15 14 13 33 33 H 1.09005 * 109.46955 * 294.74130 * 15 14 13 34 34 H 1.08994 * 109.47344 * 54.74804 * 15 14 13 35 35 H 1.09002 * 109.47289 * 309.99901 * 16 13 12 36 36 H 1.09000 * 109.47059 * 69.99823 * 16 13 12 37 37 H 0.96997 * 120.00118 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1654 2.0687 1.1375 5 6 2.6095 3.3243 1.1428 6 6 2.7538 4.0296 2.3806 7 7 2.8684 4.5891 3.3626 8 6 2.9353 3.9559 -0.0707 9 6 3.4128 5.3060 -0.0727 10 7 3.7919 6.3769 -0.0742 11 7 2.7929 3.2964 -1.2168 12 6 2.3549 2.0460 -1.2095 13 7 2.2110 1.3571 -2.4035 14 6 3.4964 1.2479 -3.1065 15 6 4.3689 0.1991 -2.4139 16 6 1.1963 1.9891 -3.2570 17 6 0.8904 1.0879 -4.4254 18 1 1.3993 0.1405 -4.5243 19 6 -0.0384 1.4732 -5.3688 20 7 -0.6570 2.6276 -5.2491 21 14 -0.4170 0.3564 -6.8174 22 1 -1.5291 -0.5599 -6.4586 23 1 -0.8126 1.1805 -7.9877 24 1 0.7898 -0.4393 -7.1576 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.3209 0.9494 -4.1400 31 1 4.0037 2.2124 -3.0878 32 1 5.2833 0.0506 -2.9882 33 1 4.6217 0.5420 -1.4105 34 1 3.8234 -0.7424 -2.3495 35 1 0.2874 2.1553 -2.6787 36 1 1.5733 2.9439 -3.6236 37 1 -1.3107 2.8986 -5.9126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166592817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:12 Heat of formation + Delta-G solvation = 120.215983 kcal Electronic energy + Delta-G solvation = -21923.805800 eV Core-core repulsion = 18702.382734 eV Total energy + Delta-G solvation = -3221.423067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.72251 -37.97103 -36.87902 -36.61807 -35.08388 -33.31813 -32.65470 -30.88126 -30.02192 -27.22198 -26.00208 -24.88062 -22.77162 -22.50158 -21.13364 -19.94878 -18.73887 -18.32707 -16.68198 -16.00798 -15.49615 -14.97373 -14.62980 -14.21850 -13.89535 -13.79434 -13.68295 -13.52733 -13.46471 -13.24855 -13.15388 -13.05826 -12.63029 -12.39175 -12.19716 -11.95276 -11.57865 -11.46513 -11.32176 -11.17459 -10.88414 -10.82499 -10.71329 -10.59292 -10.19509 -9.75345 -9.38472 -9.05809 -8.65885 -8.04217 -6.20634 -4.24562 -0.19944 0.58749 2.10502 2.24253 2.42932 2.74135 2.90411 3.22678 3.23187 3.30150 3.31619 3.62612 3.77011 4.08847 4.28735 4.50225 4.64954 4.84648 5.16252 5.30947 5.48293 5.51326 5.54211 5.64441 5.80891 5.98555 6.09652 6.14478 6.31090 6.41028 6.51721 6.53326 6.73123 6.89943 7.03926 7.04671 7.12549 7.32114 7.50584 7.58906 7.85681 8.16579 8.81076 9.40581 10.89887 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.005040 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.401152 B = 5554.357692 C = 5998.148893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.064 4.064 3 C 0.146 3.854 4 N -0.397 5.397 5 C 0.168 3.832 6 C 0.267 3.733 7 N -0.371 5.371 8 C 0.202 3.798 9 C 0.261 3.739 10 N -0.365 5.365 11 N -0.430 5.430 12 C 0.321 3.679 13 N -0.480 5.480 14 C 0.052 3.948 15 C -0.149 4.149 16 C 0.199 3.801 17 C -0.516 4.516 18 H 0.070 0.930 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.287 1.287 24 H -0.272 1.272 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.038 0.962 34 H 0.067 0.933 35 H 0.033 0.967 36 H 0.014 0.986 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.683 -5.992 8.336 11.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 C -0.003 4.003 4 N -0.112 5.112 5 C 0.026 3.974 6 C -0.051 4.051 7 N -0.047 5.047 8 C 0.057 3.943 9 C -0.058 4.058 10 N -0.041 5.041 11 N -0.148 5.148 12 C 0.085 3.915 13 N -0.204 5.204 14 C -0.074 4.074 15 C -0.206 4.206 16 C 0.077 3.923 17 C -0.554 4.554 18 H 0.088 0.912 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.728 3.272 22 H -0.205 1.205 23 H -0.213 1.213 24 H -0.197 1.197 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.129 0.871 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.051 0.949 36 H 0.031 0.969 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.143 -3.808 9.832 12.202 hybrid contribution -0.313 -0.164 -1.473 1.515 sum 5.830 -3.972 8.358 10.937 Atomic orbital electron populations 1.21698 0.93182 1.02673 1.02687 1.20549 0.97222 0.87687 1.04747 1.22596 0.92971 0.98456 0.86279 1.68287 1.08888 1.04504 1.29543 1.16872 1.02146 0.91526 0.86869 1.24550 0.94791 0.93765 0.92017 1.81251 1.06581 1.07866 1.09034 1.16926 0.99338 0.88705 0.89338 1.24707 0.94677 0.91793 0.94585 1.81238 1.06630 1.10412 1.05869 1.68846 1.10582 1.09105 1.26284 1.21508 0.88638 0.85848 0.95536 1.60657 1.10060 1.46501 1.03226 1.22214 0.87300 0.98109 0.99807 1.21853 0.99199 1.00092 0.99496 1.19930 0.87656 0.94090 0.90646 1.21006 1.23384 1.04639 1.06405 0.91216 1.24961 0.95748 0.95221 0.98241 1.69952 1.26624 1.20510 1.35978 0.86452 0.78808 0.80292 0.81611 1.20488 1.21307 1.19673 0.91517 0.92974 0.91082 0.87135 0.89995 0.87871 0.93834 0.92401 0.94257 0.91444 0.94889 0.96851 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.89 37.16 0.37 -1.33 16 2 C -0.06 -0.73 6.06 -27.88 -0.17 -0.90 16 3 C 0.15 1.98 6.07 -82.07 -0.50 1.48 16 4 N -0.40 -5.31 10.33 -6.69 -0.07 -5.38 16 5 C 0.17 2.26 6.62 -84.46 -0.56 1.70 16 6 C 0.27 3.62 14.62 -22.48 -0.33 3.29 16 7 N -0.37 -5.43 18.54 41.84 0.78 -4.65 16 8 C 0.20 2.94 6.62 -84.53 -0.56 2.38 16 9 C 0.26 3.92 14.62 -22.47 -0.33 3.60 16 10 N -0.36 -5.89 18.54 41.84 0.78 -5.11 16 11 N -0.43 -7.05 9.53 -9.88 -0.09 -7.14 16 12 C 0.32 5.08 4.64 -155.04 -0.72 4.36 16 13 N -0.48 -8.30 3.28 -174.41 -0.57 -8.87 16 14 C 0.05 0.82 5.49 -3.82 -0.02 0.80 16 15 C -0.15 -1.82 9.94 37.16 0.37 -1.45 16 16 C 0.20 4.43 4.51 -4.98 -0.02 4.41 16 17 C -0.52 -12.42 8.24 -34.44 -0.28 -12.70 16 18 H 0.07 1.62 7.30 -52.49 -0.38 1.23 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 20 N -0.89 -24.35 13.29 55.43 0.74 -23.62 16 21 Si 0.90 19.61 29.54 -169.99 -5.02 14.59 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.11 1.29 7.32 -51.92 -0.38 0.91 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 1.78 6.58 -51.93 -0.34 1.44 16 31 H 0.04 0.71 7.46 -51.93 -0.39 0.32 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.04 0.46 7.82 -51.93 -0.41 0.05 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.03 0.80 8.05 -51.93 -0.42 0.38 16 36 H 0.01 0.34 8.11 -51.93 -0.42 -0.08 16 37 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 336.94 15.07 5.08 5.08 Total: -1.00 -26.53 336.94 -5.65 -32.18 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -4.41 Total: -4.18 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -2.85 Total: 7.11 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 1.55 Total: -54.77 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.53 -5.65 -32.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.398 kcal (2) G-P(sol) polarization free energy of solvation -26.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds