Wall clock time and date at job start Tue Mar 31 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47343 * 2 1 4 4 N 1.31583 * 119.86426 * 85.45037 * 3 2 1 5 5 C 1.33181 * 120.08982 * 179.97438 * 4 3 2 6 6 C 1.43195 * 120.08950 * 179.97438 * 5 4 3 7 7 N 5.84451 * 103.23885 * 36.23171 * 2 1 3 8 8 C 1.40623 * 119.82103 * 0.02562 * 5 4 3 9 9 C 1.43204 * 120.12881 * 179.97438 * 8 5 4 10 10 N 6.76657 * 109.52926 * 359.33324 * 2 1 3 11 11 N 1.32999 * 119.74135 * 0.25110 * 8 5 4 12 12 C 1.32493 * 119.91080 * 359.49785 * 11 8 5 13 13 N 1.38596 * 119.91545 * 180.22837 * 12 11 8 14 14 C 1.46909 * 110.99835 * 60.34622 * 13 12 11 15 15 C 1.53004 * 109.46871 * 74.99467 * 14 13 12 16 16 C 1.46893 * 111.00184 * 296.39169 * 13 12 11 17 17 C 1.50699 * 109.47414 * 189.99834 * 16 13 12 18 18 H 1.08001 * 119.99932 * 359.97438 * 17 16 13 19 19 C 1.37875 * 120.00383 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99713 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00220 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46904 * 90.00210 * 21 19 17 23 23 H 1.48499 * 109.47188 * 210.00057 * 21 19 17 24 24 H 1.48499 * 109.47110 * 330.00280 * 21 19 17 25 25 H 1.09004 * 109.47510 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46931 * 299.99337 * 1 2 3 27 27 H 1.08998 * 109.47737 * 59.99057 * 1 2 3 28 28 H 1.09008 * 109.46931 * 240.00663 * 2 1 3 29 29 H 1.08998 * 109.47737 * 120.00943 * 2 1 3 30 30 H 1.08996 * 109.46673 * 194.99206 * 14 13 12 31 31 H 1.08999 * 109.46729 * 314.99714 * 14 13 12 32 32 H 1.08994 * 109.46529 * 174.74766 * 15 14 13 33 33 H 1.09005 * 109.46955 * 294.74130 * 15 14 13 34 34 H 1.08994 * 109.47344 * 54.74804 * 15 14 13 35 35 H 1.09002 * 109.47289 * 309.99901 * 16 13 12 36 36 H 1.09000 * 109.47059 * 69.99823 * 16 13 12 37 37 H 0.96997 * 120.00118 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1654 2.0687 1.1375 5 6 2.6095 3.3243 1.1428 6 6 2.7538 4.0296 2.3806 7 7 2.8684 4.5891 3.3626 8 6 2.9353 3.9559 -0.0707 9 6 3.4128 5.3060 -0.0727 10 7 3.7919 6.3769 -0.0742 11 7 2.7929 3.2964 -1.2168 12 6 2.3549 2.0460 -1.2095 13 7 2.2110 1.3571 -2.4035 14 6 3.4964 1.2479 -3.1065 15 6 4.3689 0.1991 -2.4139 16 6 1.1963 1.9891 -3.2570 17 6 0.8904 1.0879 -4.4254 18 1 1.3993 0.1405 -4.5243 19 6 -0.0384 1.4732 -5.3688 20 7 -0.6570 2.6276 -5.2491 21 14 -0.4170 0.3564 -6.8174 22 1 -1.5291 -0.5599 -6.4586 23 1 -0.8126 1.1805 -7.9877 24 1 0.7898 -0.4393 -7.1576 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.3209 0.9494 -4.1400 31 1 4.0037 2.2124 -3.0878 32 1 5.2833 0.0506 -2.9882 33 1 4.6217 0.5420 -1.4105 34 1 3.8234 -0.7424 -2.3495 35 1 0.2874 2.1553 -2.6787 36 1 1.5733 2.9439 -3.6236 37 1 -1.3107 2.8986 -5.9126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166592817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:12 Heat of formation + Delta-G solvation = 105.396436 kcal Electronic energy + Delta-G solvation = -21924.448424 eV Core-core repulsion = 18702.382734 eV Total energy + Delta-G solvation = -3222.065690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.93896 -39.29022 -38.13347 -37.83217 -36.25198 -34.92198 -34.07039 -32.00458 -31.38032 -28.85343 -27.14502 -26.25064 -24.32138 -23.61245 -22.45602 -21.15234 -19.95856 -19.54566 -18.46138 -17.34611 -16.92965 -16.52867 -15.74465 -15.70649 -15.05227 -15.00150 -14.88855 -14.73204 -14.62160 -14.46402 -14.33390 -14.25968 -14.21116 -13.97491 -13.30341 -13.16114 -12.89836 -12.71822 -12.68030 -12.45169 -12.40042 -12.22102 -11.92871 -11.81714 -11.75724 -11.39293 -10.74612 -10.57481 -10.28006 -9.56186 -8.15754 -6.25014 -1.38989 -0.61713 0.91109 1.05410 1.23168 1.51054 1.51937 1.55494 1.61883 1.70757 2.03275 2.39588 2.45656 2.57826 2.94030 3.17927 3.21681 3.49965 3.68966 4.14233 4.40607 4.52096 4.54672 4.57438 4.76674 4.95362 5.05276 5.08080 5.18057 5.22331 5.27975 5.36477 5.50591 5.57492 5.59413 5.69105 5.85754 5.93556 5.95453 6.01670 6.18452 6.46166 6.89363 7.44665 8.95657 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.005040 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.401152 B = 5554.357692 C = 5998.148893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.062 4.062 3 C 0.161 3.839 4 N -0.390 5.390 5 C 0.190 3.810 6 C 0.280 3.720 7 N -0.381 5.381 8 C 0.198 3.802 9 C 0.272 3.728 10 N -0.384 5.384 11 N -0.451 5.451 12 C 0.302 3.698 13 N -0.469 5.469 14 C 0.050 3.950 15 C -0.137 4.137 16 C 0.219 3.781 17 C -0.514 4.514 18 H 0.080 0.920 19 C 0.007 3.993 20 N -0.935 5.935 21 Si 0.965 3.035 22 H -0.273 1.273 23 H -0.294 1.294 24 H -0.258 1.258 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.036 0.964 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.008 0.992 36 H -0.024 1.024 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.394 -8.247 9.303 13.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.100 4.100 3 C 0.013 3.987 4 N -0.105 5.105 5 C 0.047 3.953 6 C -0.038 4.038 7 N -0.058 5.058 8 C 0.054 3.946 9 C -0.046 4.046 10 N -0.061 5.061 11 N -0.169 5.169 12 C 0.066 3.934 13 N -0.193 5.193 14 C -0.076 4.076 15 C -0.194 4.194 16 C 0.095 3.905 17 C -0.553 4.553 18 H 0.099 0.901 19 C -0.191 4.191 20 N -0.576 5.576 21 Si 0.790 3.210 22 H -0.199 1.199 23 H -0.220 1.220 24 H -0.182 1.182 25 H 0.106 0.894 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.026 0.974 36 H -0.006 1.006 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.881 -6.084 10.822 14.195 hybrid contribution -0.504 0.570 -1.695 1.858 sum 6.378 -5.514 9.127 12.425 Atomic orbital electron populations 1.21665 0.93346 1.03652 1.01204 1.20696 0.96825 0.86198 1.06330 1.22888 0.91307 0.99289 0.85253 1.68414 1.08865 1.04192 1.29024 1.16786 1.00741 0.91404 0.86351 1.24363 0.94427 0.93369 0.91672 1.81277 1.06818 1.08164 1.09496 1.16799 1.00167 0.88453 0.89223 1.24731 0.94110 0.91723 0.94012 1.81244 1.07433 1.10953 1.06456 1.68693 1.10979 1.09772 1.27481 1.21548 0.90277 0.86012 0.95613 1.60526 1.09896 1.45870 1.03003 1.22268 0.87045 0.98911 0.99384 1.21764 0.99102 0.98942 0.99637 1.19431 0.87916 0.92513 0.90666 1.21368 1.22502 1.04865 1.06517 0.90149 1.25818 0.95857 0.96411 1.01061 1.70096 1.27743 1.22611 1.37117 0.85434 0.79069 0.78428 0.78025 1.19883 1.22031 1.18161 0.89357 0.92506 0.94450 0.87067 0.86840 0.89646 0.94974 0.90580 0.93524 0.90445 0.97426 1.00581 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.89 71.98 0.71 -2.34 16 2 C -0.06 -1.26 6.06 29.85 0.18 -1.08 16 3 C 0.16 4.10 6.07 43.01 0.26 4.36 16 4 N -0.39 -9.58 10.33 -175.07 -1.81 -11.39 16 5 C 0.19 4.82 6.62 40.77 0.27 5.09 16 6 C 0.28 7.13 14.62 88.33 1.29 8.42 16 7 N -0.38 -10.56 18.54 19.00 0.35 -10.21 16 8 C 0.20 5.68 6.62 40.80 0.27 5.95 16 9 C 0.27 8.15 14.62 88.33 1.29 9.44 16 10 N -0.38 -12.36 18.54 19.00 0.35 -12.00 16 11 N -0.45 -14.89 9.53 -185.17 -1.76 -16.65 16 12 C 0.30 9.45 4.64 133.37 0.62 10.07 16 13 N -0.47 -16.24 3.28 -705.70 -2.32 -18.56 16 14 C 0.05 1.57 5.49 86.30 0.47 2.04 16 15 C -0.14 -3.03 9.94 71.98 0.72 -2.31 16 16 C 0.22 10.09 4.51 85.56 0.39 10.48 16 17 C -0.51 -25.03 8.24 25.60 0.21 -24.82 16 18 H 0.08 3.67 7.30 -2.91 -0.02 3.65 16 19 C 0.01 0.36 5.46 84.65 0.46 0.82 16 20 N -0.94 -52.63 13.29 21.45 0.28 -52.35 16 21 Si 0.97 40.20 29.54 68.60 2.03 42.22 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 25 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.11 2.30 7.32 -2.38 -0.02 2.28 16 29 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.09 2.96 6.58 -2.39 -0.02 2.94 16 31 H 0.03 1.06 7.46 -2.39 -0.02 1.04 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 0.97 7.82 -2.38 -0.02 0.95 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.01 0.39 8.05 -2.39 -0.02 0.37 16 36 H -0.02 -1.25 8.11 -2.39 -0.02 -1.27 16 37 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -58.05 336.94 5.38 -52.68 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: 1.10 Total: 0.13 kcal Atomic # 6 Polarization: 18.99 SS G_CDS: 7.14 Total: 26.13 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -4.90 Total: -121.16 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.22 kcal Total: -58.05 5.38 -52.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.076 kcal (2) G-P(sol) polarization free energy of solvation -58.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds