Wall clock time and date at job start Tue Mar 31 2020 05:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35967 * 116.99752 * 2 1 4 4 C 1.38642 * 120.88762 * 4.81503 * 3 2 1 5 5 N 1.32530 * 119.12323 * 179.72100 * 4 3 2 6 6 C 1.31780 * 121.06857 * 0.28649 * 5 4 3 7 7 N 1.31744 * 121.97544 * 359.97438 * 6 5 4 8 8 C 1.32978 * 120.74222 * 0.02562 * 7 6 5 9 9 N 1.38619 * 120.56505 * 179.97438 * 8 7 6 10 10 C 1.36889 * 119.99863 * 176.79569 * 9 8 7 11 11 H 1.08005 * 119.99956 * 319.80362 * 10 9 8 12 12 C 1.38829 * 119.99915 * 139.80273 * 10 9 8 13 13 N 1.31549 * 119.99847 * 162.19004 * 12 10 9 14 14 Si 1.86799 * 119.99784 * 342.19785 * 12 10 9 15 15 H 1.48501 * 109.47290 * 95.21559 * 14 12 10 16 16 H 1.48508 * 109.46726 * 215.21387 * 14 12 10 17 17 H 1.48494 * 109.47400 * 335.21246 * 14 12 10 18 18 C 1.46497 * 120.00045 * 356.79938 * 9 8 7 19 19 C 1.50704 * 109.47175 * 89.99522 * 18 9 8 20 20 C 1.38236 * 120.00096 * 269.72785 * 19 18 9 21 21 C 1.38235 * 119.99449 * 179.76786 * 20 19 18 22 22 C 1.38228 * 120.00515 * 0.50211 * 21 20 19 23 23 C 1.38240 * 119.99934 * 359.75478 * 22 21 20 24 24 C 1.38232 * 119.99463 * 89.99960 * 19 18 9 25 25 H 1.08998 * 109.46880 * 300.87911 * 1 2 3 26 26 H 1.08998 * 109.47563 * 60.88588 * 1 2 3 27 27 H 1.09001 * 109.46640 * 180.89062 * 1 2 3 28 28 H 1.07996 * 120.44235 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.01319 * 179.97438 * 6 5 4 30 30 H 0.97003 * 120.00021 * 179.97438 * 13 12 10 31 31 H 1.08994 * 109.47133 * 209.99963 * 18 9 8 32 32 H 1.09001 * 109.47038 * 329.99650 * 18 9 8 33 33 H 1.07998 * 120.00245 * 359.97438 * 20 19 18 34 34 H 1.08006 * 119.99433 * 180.23209 * 21 20 19 35 35 H 1.08000 * 120.00380 * 179.72324 * 22 21 20 36 36 H 1.07998 * 120.00127 * 179.97438 * 23 22 21 37 37 H 1.08000 * 120.00444 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.3130 2.3839 0.0999 5 7 1.9509 3.5455 0.1021 6 6 3.2641 3.6004 0.0055 7 7 4.0021 2.5139 -0.0966 8 6 3.4401 1.3088 -0.1063 9 7 4.2201 0.1680 -0.2145 10 6 3.6359 -1.0686 -0.1574 11 1 2.8381 -1.2570 0.5459 12 6 4.0688 -2.0805 -1.0035 13 7 3.7778 -3.3344 -0.7320 14 14 5.0646 -1.6616 -2.5274 15 1 6.5126 -1.7878 -2.2227 16 1 4.7065 -2.5958 -3.6249 17 1 4.7665 -0.2685 -2.9461 18 6 5.6698 0.2859 -0.3897 19 6 6.3387 0.3102 0.9606 20 6 6.5566 1.5150 1.6024 21 6 7.1658 1.5368 2.8430 22 6 7.5665 0.3548 3.4373 23 6 7.3534 -0.8496 2.7931 24 6 6.7394 -0.8719 1.5547 25 1 -0.3633 0.5274 0.8820 26 1 -0.3634 0.5000 -0.8978 27 1 -0.3632 -1.0276 0.0160 28 1 0.2365 2.3508 0.1798 29 1 3.7498 4.5650 0.0102 30 1 4.0799 -4.0414 -1.3234 31 1 6.0371 -0.5661 -0.9618 32 1 5.8974 1.2080 -0.9245 33 1 6.2479 2.4389 1.1360 34 1 7.3327 2.4778 3.3462 35 1 8.0465 0.3722 4.4046 36 1 7.6668 -1.7731 3.2571 37 1 6.5735 -1.8128 1.0511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166992682.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:03 Heat of formation + Delta-G solvation = 67.695736 kcal Electronic energy + Delta-G solvation = -22742.854837 eV Core-core repulsion = 19486.861570 eV Total energy + Delta-G solvation = -3255.993267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.25838 -38.79162 -37.40370 -36.48959 -32.68697 -31.98348 -31.07441 -30.37327 -29.30326 -27.04912 -25.94464 -24.83178 -22.58121 -22.01206 -21.82642 -20.74736 -18.02118 -17.28749 -16.77941 -16.56306 -15.95140 -15.45420 -15.15333 -14.71716 -14.49281 -14.11561 -13.69032 -13.51212 -13.10228 -12.94705 -12.84744 -12.67761 -12.57474 -12.02799 -11.70374 -11.48367 -11.27648 -10.84874 -10.79202 -10.56302 -10.37175 -10.21957 -10.10927 -9.78161 -9.11740 -8.48055 -8.41206 -8.37573 -8.11733 -6.87120 -6.54751 -4.03424 1.79059 1.91472 1.98323 2.21840 2.98285 3.15241 3.19926 3.95239 3.96266 4.16624 4.46171 4.65424 4.94156 5.08234 5.17063 5.33497 5.33848 5.45527 5.54078 5.65876 5.68506 5.73217 5.80267 5.89467 6.01246 6.04460 6.13041 6.23307 6.40868 6.48195 6.57785 6.94124 6.96474 7.09762 7.23675 7.38307 7.51133 7.72660 8.00847 8.24053 8.48559 8.98924 9.06763 9.41925 10.53177 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.012108 B = 0.009052 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.962127 B = 3092.498518 C = 4408.797078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.264 6.264 3 C -0.027 4.027 4 C 0.056 3.944 5 N -0.573 5.573 6 C 0.294 3.706 7 N -0.583 5.583 8 C 0.395 3.605 9 N -0.419 5.419 10 C -0.296 4.296 11 H 0.126 0.874 12 C 0.066 3.934 13 N -0.853 5.853 14 Si 0.870 3.130 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.262 1.262 18 C 0.144 3.856 19 C -0.085 4.085 20 C -0.097 4.097 21 C -0.134 4.134 22 C -0.128 4.128 23 C -0.130 4.130 24 C -0.091 4.091 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.092 0.908 28 H 0.148 0.852 29 H 0.177 0.823 30 H 0.277 0.723 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.303 5.708 2.725 6.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.174 6.174 3 C -0.083 4.083 4 C -0.100 4.100 5 N -0.298 5.298 6 C 0.004 3.996 7 N -0.314 5.314 8 C 0.148 3.852 9 N -0.114 5.114 10 C -0.424 4.424 11 H 0.143 0.857 12 C -0.142 4.142 13 N -0.487 5.487 14 Si 0.697 3.303 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.186 1.186 18 C 0.021 3.979 19 C -0.087 4.087 20 C -0.115 4.115 21 C -0.152 4.152 22 C -0.146 4.146 23 C -0.148 4.148 24 C -0.109 4.109 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.111 0.889 28 H 0.165 0.835 29 H 0.194 0.806 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.148 0.852 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.870 5.850 2.637 7.030 hybrid contribution -0.277 -0.672 -0.740 1.037 sum 2.593 5.178 1.897 6.094 Atomic orbital electron populations 1.22975 0.82144 1.03073 0.99718 1.86878 1.18121 1.23601 1.88829 1.20040 0.92599 0.87074 1.08568 1.22608 0.99560 0.87111 1.00691 1.68062 1.11082 1.27876 1.22774 1.24037 0.86587 0.95798 0.93209 1.67899 1.40093 0.97066 1.26311 1.18533 0.85273 0.87082 0.94297 1.42565 1.02523 1.02573 1.63756 1.19381 1.19669 0.83138 1.20227 0.85710 1.25381 0.96910 0.94894 0.97023 1.69744 1.43534 0.98892 1.36537 0.87036 0.79848 0.79664 0.83755 1.19804 1.21212 1.18571 1.20695 0.81711 1.02098 0.93369 1.20231 0.97507 0.93220 0.97709 1.21235 0.97251 0.98235 0.94801 1.21049 1.00498 0.97694 0.95989 1.21028 1.01132 0.92925 0.99523 1.21060 1.00520 0.97575 0.95627 1.21171 0.96366 0.98224 0.95180 0.94045 0.93895 0.88936 0.83494 0.80595 0.91306 0.90974 0.89788 0.85210 0.86807 0.86944 0.86640 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.86 101.05 1.00 1.27 16 2 O -0.26 -5.71 6.75 -19.64 -0.13 -5.84 16 3 C -0.03 -0.58 6.64 -38.73 -0.26 -0.83 16 4 C 0.06 1.08 10.32 -17.10 -0.18 0.91 16 5 N -0.57 -11.10 10.43 -14.54 -0.15 -11.25 16 6 C 0.29 5.45 12.27 -92.21 -1.13 4.32 16 7 N -0.58 -12.00 8.46 -13.67 -0.12 -12.12 16 8 C 0.39 8.99 7.37 -154.52 -1.14 7.85 16 9 N -0.42 -9.87 2.22 -115.99 -0.26 -10.13 16 10 C -0.30 -7.60 8.20 -15.07 -0.12 -7.72 16 11 H 0.13 3.51 6.15 -52.48 -0.32 3.19 16 12 C 0.07 1.69 5.36 -17.45 -0.09 1.59 16 13 N -0.85 -22.74 13.96 55.49 0.77 -21.96 16 14 Si 0.87 19.88 24.85 -169.99 -4.22 15.65 16 15 H -0.27 -5.87 6.73 56.52 0.38 -5.49 16 16 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.26 -6.12 7.10 56.52 0.40 -5.72 16 18 C 0.14 3.07 4.30 -5.19 -0.02 3.05 16 19 C -0.09 -1.68 5.46 -104.62 -0.57 -2.26 16 20 C -0.10 -1.73 9.65 -39.58 -0.38 -2.11 16 21 C -0.13 -2.11 10.05 -39.59 -0.40 -2.51 16 22 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 23 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 24 C -0.09 -1.74 9.70 -39.58 -0.38 -2.13 16 25 H 0.04 0.58 7.45 -51.93 -0.39 0.19 16 26 H 0.04 0.62 7.96 -51.93 -0.41 0.20 16 27 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.15 2.39 6.46 -52.49 -0.34 2.05 16 29 H 0.18 2.57 8.06 -52.48 -0.42 2.14 16 30 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.07 1.58 3.21 -51.93 -0.17 1.42 16 32 H 0.08 1.71 7.39 -51.93 -0.38 1.33 16 33 H 0.13 2.27 7.27 -52.49 -0.38 1.89 16 34 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 35 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 309.53 15.07 4.66 4.66 Total: -1.00 -28.58 309.53 -8.01 -36.59 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -4.09 Total: 7.85 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -4.48 Total: -3.46 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.25 Total: -55.46 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.13 Total: -5.84 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.22 Total: 15.65 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.58 -8.01 -36.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166992682.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.288 kcal (2) G-P(sol) polarization free energy of solvation -28.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds