Wall clock time and date at job start Tue Mar 31 2020 05:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35967 * 116.99752 * 2 1 4 4 C 1.38642 * 120.88762 * 4.81503 * 3 2 1 5 5 N 1.32530 * 119.12323 * 179.72100 * 4 3 2 6 6 C 1.31780 * 121.06857 * 0.28649 * 5 4 3 7 7 N 1.31744 * 121.97544 * 359.97438 * 6 5 4 8 8 C 1.32978 * 120.74222 * 0.02562 * 7 6 5 9 9 N 1.38619 * 120.56505 * 179.97438 * 8 7 6 10 10 C 1.36889 * 119.99863 * 176.79569 * 9 8 7 11 11 H 1.08005 * 119.99956 * 319.80362 * 10 9 8 12 12 C 1.38829 * 119.99915 * 139.80273 * 10 9 8 13 13 N 1.31549 * 119.99847 * 162.19004 * 12 10 9 14 14 Si 1.86799 * 119.99784 * 342.19785 * 12 10 9 15 15 H 1.48501 * 109.47290 * 95.21559 * 14 12 10 16 16 H 1.48508 * 109.46726 * 215.21387 * 14 12 10 17 17 H 1.48494 * 109.47400 * 335.21246 * 14 12 10 18 18 C 1.46497 * 120.00045 * 356.79938 * 9 8 7 19 19 C 1.50704 * 109.47175 * 89.99522 * 18 9 8 20 20 C 1.38236 * 120.00096 * 269.72785 * 19 18 9 21 21 C 1.38235 * 119.99449 * 179.76786 * 20 19 18 22 22 C 1.38228 * 120.00515 * 0.50211 * 21 20 19 23 23 C 1.38240 * 119.99934 * 359.75478 * 22 21 20 24 24 C 1.38232 * 119.99463 * 89.99960 * 19 18 9 25 25 H 1.08998 * 109.46880 * 300.87911 * 1 2 3 26 26 H 1.08998 * 109.47563 * 60.88588 * 1 2 3 27 27 H 1.09001 * 109.46640 * 180.89062 * 1 2 3 28 28 H 1.07996 * 120.44235 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.01319 * 179.97438 * 6 5 4 30 30 H 0.97003 * 120.00021 * 179.97438 * 13 12 10 31 31 H 1.08994 * 109.47133 * 209.99963 * 18 9 8 32 32 H 1.09001 * 109.47038 * 329.99650 * 18 9 8 33 33 H 1.07998 * 120.00245 * 359.97438 * 20 19 18 34 34 H 1.08006 * 119.99433 * 180.23209 * 21 20 19 35 35 H 1.08000 * 120.00380 * 179.72324 * 22 21 20 36 36 H 1.07998 * 120.00127 * 179.97438 * 23 22 21 37 37 H 1.08000 * 120.00444 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.3130 2.3839 0.0999 5 7 1.9509 3.5455 0.1021 6 6 3.2641 3.6004 0.0055 7 7 4.0021 2.5139 -0.0966 8 6 3.4401 1.3088 -0.1063 9 7 4.2201 0.1680 -0.2145 10 6 3.6359 -1.0686 -0.1574 11 1 2.8381 -1.2570 0.5459 12 6 4.0688 -2.0805 -1.0035 13 7 3.7778 -3.3344 -0.7320 14 14 5.0646 -1.6616 -2.5274 15 1 6.5126 -1.7878 -2.2227 16 1 4.7065 -2.5958 -3.6249 17 1 4.7665 -0.2685 -2.9461 18 6 5.6698 0.2859 -0.3897 19 6 6.3387 0.3102 0.9606 20 6 6.5566 1.5150 1.6024 21 6 7.1658 1.5368 2.8430 22 6 7.5665 0.3548 3.4373 23 6 7.3534 -0.8496 2.7931 24 6 6.7394 -0.8719 1.5547 25 1 -0.3633 0.5274 0.8820 26 1 -0.3634 0.5000 -0.8978 27 1 -0.3632 -1.0276 0.0160 28 1 0.2365 2.3508 0.1798 29 1 3.7498 4.5650 0.0102 30 1 4.0799 -4.0414 -1.3234 31 1 6.0371 -0.5661 -0.9618 32 1 5.8974 1.2080 -0.9245 33 1 6.2479 2.4389 1.1360 34 1 7.3327 2.4778 3.3462 35 1 8.0465 0.3722 4.4046 36 1 7.6668 -1.7731 3.2571 37 1 6.5735 -1.8128 1.0511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166992682.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:02 Heat of formation + Delta-G solvation = 52.904914 kcal Electronic energy + Delta-G solvation = -22743.496215 eV Core-core repulsion = 19486.861570 eV Total energy + Delta-G solvation = -3256.634645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.85731 -40.17741 -38.94845 -38.10667 -34.50036 -33.56968 -32.61276 -31.69392 -30.86807 -28.47242 -27.48480 -26.57044 -24.11976 -23.42839 -23.33891 -22.21773 -19.76379 -18.86469 -18.32023 -18.17310 -17.41673 -17.12977 -16.69126 -16.09369 -15.95919 -15.64313 -15.26171 -15.09698 -14.66429 -14.49083 -14.29946 -14.19819 -14.13909 -13.49236 -13.31822 -13.08650 -12.70306 -12.43790 -12.24531 -12.10051 -12.00614 -11.74889 -11.68711 -11.48742 -10.95810 -10.14370 -9.87990 -9.73639 -9.57583 -8.57984 -8.45412 -5.96792 0.40379 0.43632 0.58387 0.59789 1.15820 1.28728 1.34322 2.12246 2.40902 2.61083 2.92120 3.04299 3.24904 3.62514 3.66847 3.89699 3.99209 4.09983 4.18687 4.22883 4.30914 4.37205 4.47226 4.50532 4.53200 4.76556 4.78560 4.81886 4.88897 5.15570 5.24622 5.53977 5.61631 5.64207 5.66058 5.84059 6.08225 6.19882 6.27565 6.46102 6.77339 7.15743 7.31219 7.69963 8.64905 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.012108 B = 0.009052 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.962127 B = 3092.498518 C = 4408.797078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.299 6.299 3 C -0.052 4.052 4 C 0.071 3.929 5 N -0.571 5.571 6 C 0.292 3.708 7 N -0.581 5.581 8 C 0.378 3.622 9 N -0.439 5.439 10 C -0.287 4.287 11 H 0.092 0.908 12 C 0.030 3.970 13 N -0.896 5.896 14 Si 0.918 3.082 15 H -0.257 1.257 16 H -0.287 1.287 17 H -0.271 1.271 18 C 0.148 3.852 19 C -0.107 4.107 20 C -0.106 4.106 21 C -0.130 4.130 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.117 4.117 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.180 0.820 29 H 0.220 0.780 30 H 0.278 0.722 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.137 0.863 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.716 8.326 3.876 9.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.210 6.210 3 C -0.108 4.108 4 C -0.086 4.086 5 N -0.294 5.294 6 C 0.003 3.997 7 N -0.311 5.311 8 C 0.133 3.867 9 N -0.137 5.137 10 C -0.415 4.415 11 H 0.109 0.891 12 C -0.174 4.174 13 N -0.534 5.534 14 Si 0.745 3.255 15 H -0.183 1.183 16 H -0.213 1.213 17 H -0.196 1.196 18 C 0.025 3.975 19 C -0.108 4.108 20 C -0.125 4.125 21 C -0.147 4.147 22 C -0.138 4.138 23 C -0.150 4.150 24 C -0.135 4.135 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.196 0.804 29 H 0.236 0.764 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.149 0.851 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.155 0.845 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.294 8.508 3.790 9.880 hybrid contribution -0.535 -1.231 -0.978 1.661 sum 2.759 7.278 2.812 8.276 Atomic orbital electron populations 1.23221 0.79462 1.04261 1.01470 1.86798 1.20985 1.24073 1.89150 1.20289 0.92672 0.87976 1.09870 1.23110 1.00962 0.86164 0.98401 1.68191 1.11521 1.27671 1.22045 1.24917 0.86543 0.96704 0.91562 1.67972 1.40507 0.96841 1.25775 1.18883 0.86191 0.87632 0.94027 1.42503 1.03251 1.02082 1.65823 1.18995 1.18944 0.84326 1.19281 0.89073 1.25783 0.98104 0.94675 0.98839 1.69815 1.46147 0.99607 1.37805 0.86263 0.79691 0.78494 0.81053 1.18329 1.21346 1.19555 1.20639 0.80849 1.01432 0.94534 1.20198 0.98787 0.94330 0.97500 1.21313 0.97939 0.97352 0.95865 1.21449 0.98855 0.99467 0.94960 1.21465 0.99814 0.91883 1.00609 1.21348 0.99615 0.99475 0.94529 1.21144 0.98384 0.97231 0.96783 0.91859 0.92260 0.88286 0.80356 0.76435 0.91234 0.92336 0.89447 0.85113 0.83491 0.83090 0.84504 0.88210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.34 9.86 113.37 1.12 1.45 16 2 O -0.30 -13.12 6.75 -93.18 -0.63 -13.75 16 3 C -0.05 -2.25 6.64 22.82 0.15 -2.10 16 4 C 0.07 2.57 10.32 84.68 0.87 3.45 16 5 N -0.57 -20.32 10.43 -199.92 -2.08 -22.41 16 6 C 0.29 9.97 12.27 180.90 2.22 12.19 16 7 N -0.58 -23.11 8.46 -197.17 -1.67 -24.78 16 8 C 0.38 17.23 7.37 133.26 0.98 18.21 16 9 N -0.44 -21.23 2.22 -520.90 -1.16 -22.39 16 10 C -0.29 -15.43 8.20 84.05 0.69 -14.74 16 11 H 0.09 5.46 6.15 -2.91 -0.02 5.44 16 12 C 0.03 1.59 5.36 84.88 0.46 2.04 16 13 N -0.90 -50.28 13.96 21.65 0.30 -49.98 16 14 Si 0.92 42.63 24.85 68.60 1.70 44.33 16 15 H -0.26 -11.17 6.73 99.48 0.67 -10.50 16 16 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 17 H -0.27 -12.79 7.10 99.48 0.71 -12.08 16 18 C 0.15 6.46 4.30 85.63 0.37 6.82 16 19 C -0.11 -4.27 5.46 -19.87 -0.11 -4.38 16 20 C -0.11 -3.66 9.65 22.27 0.21 -3.45 16 21 C -0.13 -3.67 10.05 22.27 0.22 -3.45 16 22 C -0.12 -3.24 10.05 22.27 0.22 -3.02 16 23 C -0.13 -4.17 10.05 22.27 0.22 -3.95 16 24 C -0.12 -4.58 9.70 22.27 0.22 -4.36 16 25 H 0.06 1.65 7.45 -2.39 -0.02 1.63 16 26 H 0.06 1.61 7.96 -2.39 -0.02 1.59 16 27 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.18 5.18 6.46 -2.91 -0.02 5.17 16 29 H 0.22 5.41 8.06 -2.91 -0.02 5.39 16 30 H 0.28 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.06 2.66 3.21 -2.39 -0.01 2.65 16 32 H 0.09 3.61 7.39 -2.39 -0.02 3.60 16 33 H 0.13 4.39 7.27 -2.91 -0.02 4.37 16 34 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 37 H 0.10 4.29 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -64.20 309.53 5.38 -58.83 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 1.06 Total: 25.41 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 7.85 Total: 4.73 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -4.61 Total: -119.55 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.63 Total: -13.75 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.70 Total: 44.33 kcal Total: -64.20 5.38 -58.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166992682.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.732 kcal (2) G-P(sol) polarization free energy of solvation -64.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds