Wall clock time and date at job start Tue Mar 31 2020 05:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35519 * 116.99410 * 2 1 4 4 C 1.39486 * 120.46167 * 183.63974 * 3 2 1 5 5 C 1.38260 * 118.50033 * 180.02562 * 4 3 2 6 6 N 1.32416 * 119.27009 * 359.97438 * 5 4 3 7 7 C 1.32504 * 120.88779 * 0.02562 * 6 5 4 8 8 N 1.38436 * 119.18295 * 179.71689 * 7 6 5 9 9 C 1.36988 * 120.00205 * 353.94856 * 8 7 6 10 10 H 1.07994 * 120.00436 * 136.86498 * 9 8 7 11 11 C 1.38838 * 119.99635 * 316.86005 * 9 8 7 12 12 N 1.31545 * 119.99954 * 346.11746 * 11 9 8 13 13 Si 1.86799 * 119.99848 * 166.10800 * 11 9 8 14 14 H 1.48504 * 109.47123 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46902 * 120.00373 * 13 11 9 16 16 H 1.48497 * 109.47052 * 240.00305 * 13 11 9 17 17 C 1.46497 * 119.99867 * 173.94129 * 8 7 6 18 18 C 1.50697 * 109.47229 * 90.00260 * 17 8 7 19 19 C 1.38231 * 119.99804 * 269.72748 * 18 17 8 20 20 C 1.38244 * 119.99899 * 179.76589 * 19 18 17 21 21 C 1.38235 * 119.99731 * 0.50617 * 20 19 18 22 22 C 1.38237 * 119.99844 * 359.74566 * 21 20 19 23 23 C 1.38232 * 120.00332 * 0.02562 * 22 21 20 24 24 N 1.32526 * 121.63054 * 0.02562 * 7 6 5 25 25 H 1.09008 * 109.47239 * 180.83738 * 1 2 3 26 26 H 1.08998 * 109.47226 * 300.83670 * 1 2 3 27 27 H 1.09001 * 109.47905 * 60.84080 * 1 2 3 28 28 H 1.07994 * 120.75209 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.36173 * 180.02562 * 5 4 3 30 30 H 0.97000 * 119.99918 * 185.04079 * 12 11 9 31 31 H 1.08999 * 109.47312 * 210.00845 * 17 8 7 32 32 H 1.09011 * 109.47286 * 330.00306 * 17 8 7 33 33 H 1.08001 * 120.00436 * 359.97438 * 19 18 17 34 34 H 1.07998 * 120.00361 * 180.22990 * 20 19 18 35 35 H 1.07996 * 120.00224 * 179.72766 * 21 20 19 36 36 H 1.08002 * 119.99762 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.00396 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2075 0.0000 4 6 3.4342 1.2930 -0.0763 5 6 4.0194 2.5457 -0.0728 6 7 3.2489 3.6200 0.0019 7 6 1.9305 3.5079 0.0734 8 7 1.1590 4.6543 0.1562 9 6 1.7617 5.8774 0.2884 10 1 1.4064 6.7196 -0.2867 11 6 2.8293 6.0343 1.1621 12 7 3.0903 5.1046 2.0553 13 14 3.8952 7.5655 1.0688 14 1 3.3953 8.4515 -0.0131 15 1 3.8386 8.2877 2.3652 16 1 5.2986 7.1749 0.7806 17 6 -0.3019 4.5596 0.1022 18 6 -0.8466 4.3957 1.4976 19 6 -1.0206 3.1308 2.0274 20 6 -1.5157 2.9805 3.3094 21 6 -1.8466 4.0948 4.0575 22 6 -1.6775 5.3595 3.5257 23 6 -1.1779 5.5100 2.2456 24 7 1.3326 2.3252 0.0736 25 1 -0.3634 -1.0276 0.0150 26 1 -0.3633 0.5268 0.8824 27 1 -0.3635 0.5007 -0.8974 28 1 4.0399 0.4009 -0.1360 29 1 5.0931 2.6468 -0.1311 30 1 3.7892 5.2463 2.7128 31 1 -0.7087 5.4679 -0.3423 32 1 -0.5881 3.6993 -0.5030 33 1 -0.7666 2.2601 1.4412 34 1 -1.6482 1.9925 3.7247 35 1 -2.2376 3.9774 5.0574 36 1 -1.9364 6.2301 4.1101 37 1 -1.0462 6.4980 1.8299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166993182.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:54 Heat of formation + Delta-G solvation = 68.274436 kcal Electronic energy + Delta-G solvation = -22820.350881 eV Core-core repulsion = 19564.382709 eV Total energy + Delta-G solvation = -3255.968172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.86980 -38.60822 -37.65365 -35.59296 -32.52768 -31.50305 -30.77208 -30.26952 -29.37061 -26.83384 -25.86947 -24.31793 -22.40594 -21.92933 -21.73275 -20.33835 -18.45017 -16.84892 -16.61642 -16.10839 -15.35630 -15.01065 -14.67422 -14.53566 -14.32318 -14.12876 -13.92771 -13.35527 -13.26779 -12.87983 -12.57855 -12.57170 -11.93771 -11.64757 -11.44335 -11.27012 -11.01737 -11.00400 -10.78132 -10.43538 -10.29756 -10.21885 -9.54982 -9.36022 -8.80410 -8.44311 -8.26947 -8.13405 -7.71655 -6.73417 -6.17312 -3.91732 1.95946 2.05506 2.51526 2.62479 3.24745 3.31457 3.33495 3.73336 4.07439 4.39661 4.68829 5.13714 5.32903 5.40575 5.46050 5.47791 5.59027 5.61000 5.63389 5.80806 5.89641 6.00055 6.08390 6.17276 6.24388 6.28513 6.37363 6.45936 6.62814 6.69230 6.71119 7.07270 7.08421 7.31517 7.38596 7.51543 7.65182 7.79413 8.13669 8.34924 8.83737 9.09138 9.54838 10.03343 10.83571 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.011127 B = 0.010021 C = 0.005922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.814749 B = 2793.342964 C = 4726.949709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.317 6.317 3 C 0.382 3.618 4 C -0.359 4.359 5 C 0.202 3.798 6 N -0.520 5.520 7 C 0.580 3.420 8 N -0.402 5.402 9 C -0.329 4.329 10 H 0.085 0.915 11 C 0.076 3.924 12 N -0.825 5.825 13 Si 0.918 3.082 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.279 1.279 17 C 0.163 3.837 18 C -0.075 4.075 19 C -0.097 4.097 20 C -0.134 4.134 21 C -0.131 4.131 22 C -0.131 4.131 23 C -0.092 4.092 24 N -0.642 5.642 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.120 0.880 29 H 0.145 0.855 30 H 0.265 0.735 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.395 -4.021 -0.634 7.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.222 6.222 3 C 0.192 3.808 4 C -0.389 4.389 5 C 0.030 3.970 6 N -0.244 5.244 7 C 0.228 3.772 8 N -0.099 5.099 9 C -0.457 4.457 10 H 0.103 0.897 11 C -0.136 4.136 12 N -0.456 5.456 13 Si 0.745 3.255 14 H -0.195 1.195 15 H -0.213 1.213 16 H -0.205 1.205 17 C 0.039 3.961 18 C -0.076 4.076 19 C -0.115 4.115 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.149 4.149 23 C -0.111 4.111 24 N -0.384 5.384 25 H 0.103 0.897 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.138 0.862 29 H 0.163 0.837 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.143 0.857 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.898 -3.257 -0.465 7.642 hybrid contribution 1.065 -0.076 0.466 1.165 sum -5.832 -3.333 0.001 6.718 Atomic orbital electron populations 1.22746 0.78753 1.01673 1.02154 1.86163 1.21806 1.25896 1.88360 1.19517 0.89013 0.83727 0.88561 1.21020 0.92191 0.99809 1.25860 1.22453 0.99102 0.86850 0.88634 1.68053 1.04527 1.31438 1.20342 1.18789 0.85379 0.83931 0.89073 1.41728 1.01031 1.02604 1.64502 1.19138 1.16043 0.86138 1.24415 0.89694 1.25240 0.97612 0.97105 0.93660 1.69855 1.29160 1.33009 1.13597 0.86055 0.80585 0.81192 0.77677 1.19518 1.21284 1.20466 1.20384 0.82293 1.01179 0.92203 1.20328 0.96342 0.92910 0.98070 1.21225 0.97370 0.97619 0.95335 1.21008 1.01149 0.97958 0.95069 1.20942 1.01851 0.93020 0.99148 1.20987 1.01241 0.96759 0.95876 1.21005 0.97389 0.98528 0.94177 1.67251 1.41038 0.98180 1.31898 0.89681 0.92556 0.92883 0.86197 0.83738 0.92459 0.91077 0.90921 0.85710 0.87242 0.87264 0.87048 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.43 101.05 1.05 1.69 16 2 O -0.32 -5.96 10.49 -18.25 -0.19 -6.15 16 3 C 0.38 8.26 7.53 -16.71 -0.13 8.14 16 4 C -0.36 -7.46 10.12 -39.11 -0.40 -7.86 16 5 C 0.20 4.45 11.29 -17.29 -0.20 4.25 16 6 N -0.52 -13.32 7.24 -13.97 -0.10 -13.42 16 7 C 0.58 14.67 7.27 -322.71 -2.35 12.32 16 8 N -0.40 -9.92 2.58 -118.34 -0.31 -10.22 16 9 C -0.33 -8.48 9.19 -15.03 -0.14 -8.61 16 10 H 0.09 2.10 7.87 -52.49 -0.41 1.69 16 11 C 0.08 1.97 4.43 -17.45 -0.08 1.89 16 12 N -0.82 -22.94 11.37 55.49 0.63 -22.31 16 13 Si 0.92 20.61 29.58 -169.99 -5.03 15.58 16 14 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 15 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 C 0.16 3.38 5.45 -5.20 -0.03 3.35 16 18 C -0.07 -1.51 5.46 -104.63 -0.57 -2.08 16 19 C -0.10 -1.88 9.47 -39.58 -0.38 -2.26 16 20 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 21 C -0.13 -2.19 10.05 -39.58 -0.40 -2.58 16 22 C -0.13 -2.26 10.05 -39.58 -0.40 -2.65 16 23 C -0.09 -1.77 9.70 -39.58 -0.38 -2.15 16 24 N -0.64 -14.73 6.91 -13.95 -0.10 -14.83 16 25 H 0.08 0.97 8.14 -51.92 -0.42 0.54 16 26 H 0.06 0.88 6.04 -51.93 -0.31 0.57 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 29 H 0.15 2.68 8.06 -52.49 -0.42 2.25 16 30 H 0.27 7.14 8.32 -40.82 -0.34 6.80 16 31 H 0.07 1.34 7.98 -51.93 -0.41 0.92 16 32 H 0.07 1.44 7.39 -51.92 -0.38 1.05 16 33 H 0.13 2.42 5.06 -52.49 -0.27 2.15 16 34 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 317.27 15.07 4.78 4.78 Total: -1.00 -30.59 317.27 -9.40 -39.99 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -4.31 Total: 5.88 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -4.78 Total: 0.71 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.13 Total: -60.78 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.19 Total: -6.15 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.59 -9.40 -39.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993182.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.263 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds