Wall clock time and date at job start Tue Mar 31 2020 05:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35698 * 117.00143 * 2 1 4 4 N 1.32301 * 120.12033 * 359.97438 * 3 2 1 5 5 C 1.32398 * 120.02235 * 180.02562 * 4 3 2 6 6 C 1.38107 * 120.26900 * 359.97438 * 5 4 3 7 7 N 1.32283 * 120.24936 * 359.72976 * 6 5 4 8 8 C 1.32607 * 119.97322 * 0.54837 * 7 6 5 9 9 N 1.38859 * 120.13478 * 179.72229 * 8 7 6 10 10 C 1.36847 * 119.99889 * 185.67318 * 9 8 7 11 11 H 1.07994 * 120.00408 * 42.18755 * 10 9 8 12 12 C 1.38808 * 119.99566 * 222.46817 * 10 9 8 13 13 N 1.31569 * 120.00084 * 15.41572 * 12 10 9 14 14 Si 1.86805 * 119.99605 * 195.41104 * 12 10 9 15 15 H 1.48503 * 109.46897 * 90.00265 * 14 12 10 16 16 H 1.48500 * 109.46862 * 210.00017 * 14 12 10 17 17 H 1.48499 * 109.47368 * 330.00004 * 14 12 10 18 18 C 1.46498 * 120.00048 * 5.66876 * 9 8 7 19 19 C 1.50704 * 109.47362 * 274.23725 * 18 9 8 20 20 C 1.38231 * 120.00002 * 275.42038 * 19 18 9 21 21 C 1.38227 * 120.00210 * 179.76332 * 20 19 18 22 22 C 1.38239 * 120.00010 * 0.50566 * 21 20 19 23 23 C 1.38238 * 119.99737 * 359.74943 * 22 21 20 24 24 C 1.38232 * 120.00054 * 95.69062 * 19 18 9 25 25 H 1.09000 * 109.47509 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47014 * 299.99754 * 1 2 3 27 27 H 1.09000 * 109.47596 * 59.99598 * 1 2 3 28 28 H 1.07999 * 119.86596 * 179.97438 * 5 4 3 29 29 H 1.08005 * 119.87567 * 180.02562 * 6 5 4 30 30 H 0.97005 * 119.99849 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.46907 * 34.23682 * 18 9 8 32 32 H 1.08997 * 109.46716 * 154.23577 * 18 9 8 33 33 H 1.08006 * 120.00021 * 359.97438 * 20 19 18 34 34 H 1.08002 * 120.00474 * 180.23156 * 21 20 19 35 35 H 1.07996 * 120.00153 * 179.72134 * 22 21 20 36 36 H 1.07995 * 119.99890 * 179.97438 * 23 22 21 37 37 H 1.08000 * 120.00182 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 7 1.3268 2.3202 -0.0005 5 6 1.9299 3.4988 -0.0010 6 6 3.3089 3.5752 -0.0005 7 7 4.0374 2.4710 0.0059 8 6 3.4436 1.2854 0.0009 9 7 4.2051 0.1243 0.0018 10 6 3.5947 -1.0944 -0.1206 11 1 2.7912 -1.2272 -0.8298 12 6 4.0045 -2.1584 0.6711 13 7 4.7500 -1.9395 1.7329 14 14 3.4973 -3.9011 0.2290 15 1 4.5164 -4.5002 -0.6697 16 1 3.3896 -4.7143 1.4669 17 1 2.1829 -3.8740 -0.4614 18 6 5.6620 0.2039 0.1336 19 6 6.2785 0.4155 -1.2252 20 6 6.5363 -0.6682 -2.0436 21 6 7.0973 -0.4737 -3.2919 22 6 7.4102 0.8037 -3.7176 23 6 7.1574 1.8870 -2.8970 24 6 6.5915 1.6929 -1.6508 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.3412 4.4042 -0.0019 29 1 3.7943 4.5400 -0.0005 30 1 5.0361 -2.6830 2.2863 31 1 5.9228 1.0381 0.7849 32 1 6.0391 -0.7242 0.5631 33 1 6.2962 -1.6667 -1.7092 34 1 7.2952 -1.3201 -3.9329 35 1 7.8527 0.9553 -4.6910 36 1 7.4022 2.8850 -3.2294 37 1 6.3945 2.5392 -1.0095 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166993501.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:58 Heat of formation + Delta-G solvation = 59.271656 kcal Electronic energy + Delta-G solvation = -22700.525288 eV Core-core repulsion = 19444.166726 eV Total energy + Delta-G solvation = -3256.358562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.08895 -38.63669 -37.13182 -36.21433 -32.77118 -31.88181 -31.08954 -30.28985 -28.71507 -26.83254 -25.81441 -24.44706 -22.54792 -21.93418 -21.84192 -20.36144 -18.00875 -17.30685 -16.68051 -16.27043 -15.70243 -15.21602 -14.79111 -14.57481 -14.35946 -13.96048 -13.76399 -13.37354 -13.19235 -12.84277 -12.66592 -12.56887 -12.02555 -11.60581 -11.37379 -11.24560 -11.01050 -10.96688 -10.66636 -10.52256 -10.42810 -10.24119 -10.11585 -9.84428 -9.14099 -8.40485 -8.34291 -8.31913 -8.01434 -6.69939 -6.30096 -4.02535 1.90849 1.99620 2.14173 2.35074 3.11195 3.16799 3.20408 3.93612 4.06701 4.32592 4.71413 4.78273 5.02394 5.31741 5.41492 5.45279 5.46766 5.57053 5.84135 5.87622 5.95571 5.97222 6.09424 6.10549 6.18444 6.23251 6.37251 6.46535 6.59340 6.71766 7.01475 7.02789 7.05569 7.10721 7.41025 7.43312 7.61425 7.94162 8.27432 8.33322 8.51211 8.96115 9.08765 9.59741 10.53559 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.009508 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.000136 B = 2944.266299 C = 4744.274593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.265 6.265 3 C 0.218 3.782 4 N -0.477 5.477 5 C -0.068 4.068 6 C 0.070 3.930 7 N -0.521 5.521 8 C 0.339 3.661 9 N -0.392 5.392 10 C -0.289 4.289 11 H 0.105 0.895 12 C 0.040 3.960 13 N -0.860 5.860 14 Si 0.922 3.078 15 H -0.275 1.275 16 H -0.283 1.283 17 H -0.266 1.266 18 C 0.160 3.840 19 C -0.082 4.082 20 C -0.097 4.097 21 C -0.133 4.133 22 C -0.133 4.133 23 C -0.135 4.135 24 C -0.096 4.096 25 H 0.082 0.918 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.272 0.728 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 3.484 -5.052 6.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.169 6.169 3 C 0.021 3.979 4 N -0.207 5.207 5 C -0.224 4.224 6 C -0.089 4.089 7 N -0.249 5.249 8 C 0.094 3.906 9 N -0.083 5.083 10 C -0.417 4.417 11 H 0.122 0.878 12 C -0.166 4.166 13 N -0.495 5.495 14 Si 0.748 3.252 15 H -0.201 1.201 16 H -0.208 1.208 17 H -0.190 1.190 18 C 0.036 3.964 19 C -0.084 4.084 20 C -0.115 4.115 21 C -0.152 4.152 22 C -0.152 4.152 23 C -0.153 4.153 24 C -0.115 4.115 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.159 0.841 29 H 0.163 0.837 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.128 0.872 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.512 2.883 -4.842 5.834 hybrid contribution -0.622 -0.504 -0.174 0.819 sum 0.890 2.378 -5.016 5.622 Atomic orbital electron populations 1.22690 0.81631 1.01418 1.00770 1.86980 1.19168 1.22496 1.88281 1.20151 0.89115 0.85564 1.03085 1.67684 1.39607 0.98385 1.15041 1.22282 0.93220 0.94181 1.12724 1.22833 0.92017 0.96387 0.97634 1.68007 1.37650 0.96486 1.22781 1.19243 0.85975 0.88383 0.97036 1.42315 1.02970 1.01328 1.61737 1.19706 1.18165 0.84137 1.19740 0.87792 1.25539 0.96886 1.00709 0.93504 1.69969 1.34529 1.32706 1.12248 0.85988 0.79586 0.81503 0.78143 1.20107 1.20808 1.18998 1.20438 0.80790 1.04108 0.91033 1.20613 0.96662 0.92829 0.98255 1.21138 0.97403 0.99286 0.93717 1.21040 1.00863 0.96694 0.96562 1.20975 1.01815 0.93119 0.99274 1.21054 1.01061 0.98142 0.95065 1.21265 0.97047 0.97294 0.95879 0.89946 0.93678 0.93856 0.84093 0.83651 0.91820 0.91556 0.87168 0.86108 0.86974 0.87205 0.87055 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.40 101.05 1.05 1.62 16 2 O -0.27 -6.12 6.70 -18.80 -0.13 -6.24 16 3 C 0.22 5.14 7.43 -16.67 -0.12 5.02 16 4 N -0.48 -10.33 9.39 -12.91 -0.12 -10.45 16 5 C -0.07 -1.29 11.21 -17.36 -0.19 -1.49 16 6 C 0.07 1.31 11.21 -17.41 -0.20 1.12 16 7 N -0.52 -11.34 8.33 -12.11 -0.10 -11.44 16 8 C 0.34 8.17 7.32 -154.63 -1.13 7.03 16 9 N -0.39 -9.59 2.57 -116.06 -0.30 -9.89 16 10 C -0.29 -7.23 7.45 -15.10 -0.11 -7.35 16 11 H 0.10 2.67 6.26 -52.49 -0.33 2.35 16 12 C 0.04 0.99 5.02 -17.45 -0.09 0.90 16 13 N -0.86 -21.89 11.52 55.49 0.64 -21.25 16 14 Si 0.92 19.25 29.58 -169.99 -5.03 14.22 16 15 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 16 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 18 C 0.16 3.61 5.00 -5.19 -0.03 3.58 16 19 C -0.08 -1.66 5.44 -104.62 -0.57 -2.23 16 20 C -0.10 -1.86 9.72 -39.59 -0.38 -2.24 16 21 C -0.13 -2.21 10.05 -39.59 -0.40 -2.61 16 22 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 23 C -0.14 -2.20 10.05 -39.58 -0.40 -2.59 16 24 C -0.10 -1.78 9.28 -39.58 -0.37 -2.15 16 25 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.04 0.80 8.11 -51.93 -0.42 0.38 16 27 H 0.04 0.75 8.11 -51.93 -0.42 0.33 16 28 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 29 H 0.15 2.12 8.06 -52.48 -0.42 1.70 16 30 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 31 H 0.07 1.51 7.53 -51.93 -0.39 1.12 16 32 H 0.11 2.65 5.70 -51.93 -0.30 2.35 16 33 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 34 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.13 2.35 7.36 -52.49 -0.39 1.96 16 LS Contribution 316.92 15.07 4.78 4.78 Total: -1.00 -27.91 316.92 -7.94 -35.85 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -4.34 Total: 8.29 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -3.34 Total: -3.86 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.12 Total: -53.03 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.13 Total: -6.24 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.91 -7.94 -35.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993501.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.118 kcal (2) G-P(sol) polarization free energy of solvation -27.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds