Wall clock time and date at job start Tue Mar 31 2020 05:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35698 * 117.00143 * 2 1 4 4 N 1.32301 * 120.12033 * 359.97438 * 3 2 1 5 5 C 1.32398 * 120.02235 * 180.02562 * 4 3 2 6 6 C 1.38107 * 120.26900 * 359.97438 * 5 4 3 7 7 N 1.32283 * 120.24936 * 359.72976 * 6 5 4 8 8 C 1.32607 * 119.97322 * 0.54837 * 7 6 5 9 9 N 1.38859 * 120.13478 * 179.72229 * 8 7 6 10 10 C 1.36847 * 119.99889 * 185.67318 * 9 8 7 11 11 H 1.07994 * 120.00408 * 42.18755 * 10 9 8 12 12 C 1.38808 * 119.99566 * 222.46817 * 10 9 8 13 13 N 1.31569 * 120.00084 * 15.41572 * 12 10 9 14 14 Si 1.86805 * 119.99605 * 195.41104 * 12 10 9 15 15 H 1.48503 * 109.46897 * 90.00265 * 14 12 10 16 16 H 1.48500 * 109.46862 * 210.00017 * 14 12 10 17 17 H 1.48499 * 109.47368 * 330.00004 * 14 12 10 18 18 C 1.46498 * 120.00048 * 5.66876 * 9 8 7 19 19 C 1.50704 * 109.47362 * 274.23725 * 18 9 8 20 20 C 1.38231 * 120.00002 * 275.42038 * 19 18 9 21 21 C 1.38227 * 120.00210 * 179.76332 * 20 19 18 22 22 C 1.38239 * 120.00010 * 0.50566 * 21 20 19 23 23 C 1.38238 * 119.99737 * 359.74943 * 22 21 20 24 24 C 1.38232 * 120.00054 * 95.69062 * 19 18 9 25 25 H 1.09000 * 109.47509 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47014 * 299.99754 * 1 2 3 27 27 H 1.09000 * 109.47596 * 59.99598 * 1 2 3 28 28 H 1.07999 * 119.86596 * 179.97438 * 5 4 3 29 29 H 1.08005 * 119.87567 * 180.02562 * 6 5 4 30 30 H 0.97005 * 119.99849 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.46907 * 34.23682 * 18 9 8 32 32 H 1.08997 * 109.46716 * 154.23577 * 18 9 8 33 33 H 1.08006 * 120.00021 * 359.97438 * 20 19 18 34 34 H 1.08002 * 120.00474 * 180.23156 * 21 20 19 35 35 H 1.07996 * 120.00153 * 179.72134 * 22 21 20 36 36 H 1.07995 * 119.99890 * 179.97438 * 23 22 21 37 37 H 1.08000 * 120.00182 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 7 1.3268 2.3202 -0.0005 5 6 1.9299 3.4988 -0.0010 6 6 3.3089 3.5752 -0.0005 7 7 4.0374 2.4710 0.0059 8 6 3.4436 1.2854 0.0009 9 7 4.2051 0.1243 0.0018 10 6 3.5947 -1.0944 -0.1206 11 1 2.7912 -1.2272 -0.8298 12 6 4.0045 -2.1584 0.6711 13 7 4.7500 -1.9395 1.7329 14 14 3.4973 -3.9011 0.2290 15 1 4.5164 -4.5002 -0.6697 16 1 3.3896 -4.7143 1.4669 17 1 2.1829 -3.8740 -0.4614 18 6 5.6620 0.2039 0.1336 19 6 6.2785 0.4155 -1.2252 20 6 6.5363 -0.6682 -2.0436 21 6 7.0973 -0.4737 -3.2919 22 6 7.4102 0.8037 -3.7176 23 6 7.1574 1.8870 -2.8970 24 6 6.5915 1.6929 -1.6508 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.3412 4.4042 -0.0019 29 1 3.7943 4.5400 -0.0005 30 1 5.0361 -2.6830 2.2863 31 1 5.9228 1.0381 0.7849 32 1 6.0391 -0.7242 0.5631 33 1 6.2962 -1.6667 -1.7092 34 1 7.2952 -1.3201 -3.9329 35 1 7.8527 0.9553 -4.6910 36 1 7.4022 2.8850 -3.2294 37 1 6.3945 2.5392 -1.0095 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166993501.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:57 Heat of formation + Delta-G solvation = 43.604027 kcal Electronic energy + Delta-G solvation = -22701.204687 eV Core-core repulsion = 19444.166726 eV Total energy + Delta-G solvation = -3257.037961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.74485 -40.04954 -38.76817 -37.86959 -34.50577 -33.57111 -32.61313 -31.64013 -30.33400 -28.39275 -27.42559 -26.15795 -24.17241 -23.48972 -23.25759 -21.87664 -19.74622 -18.94111 -18.29422 -17.86462 -17.25167 -16.86419 -16.47427 -15.97935 -15.79761 -15.56732 -15.28659 -14.93051 -14.85751 -14.22942 -14.17921 -14.05151 -13.52307 -13.21227 -12.98415 -12.92867 -12.61368 -12.53231 -12.24392 -12.08747 -12.06463 -11.75607 -11.67354 -11.53544 -10.91364 -10.12589 -9.88584 -9.68473 -9.49003 -8.49137 -8.04280 -5.89004 0.47655 0.56863 0.63859 0.68044 1.43563 1.44819 1.54811 2.25378 2.46226 2.81438 3.00454 3.19483 3.31670 3.73568 3.95668 4.09834 4.17588 4.24456 4.30113 4.42601 4.52169 4.53549 4.58105 4.69375 4.77408 4.80869 4.84628 4.92082 5.20163 5.27231 5.33112 5.50994 5.59470 5.69673 5.70966 5.95496 6.17818 6.27504 6.59547 6.63778 6.78222 7.25462 7.31805 7.82902 8.72667 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.009508 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.000136 B = 2944.266299 C = 4744.274593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.292 6.292 3 C 0.183 3.817 4 N -0.481 5.481 5 C -0.056 4.056 6 C 0.070 3.930 7 N -0.523 5.523 8 C 0.314 3.686 9 N -0.414 5.414 10 C -0.293 4.293 11 H 0.090 0.910 12 C 0.002 3.998 13 N -0.895 5.895 14 Si 0.977 3.023 15 H -0.268 1.268 16 H -0.283 1.283 17 H -0.263 1.263 18 C 0.173 3.827 19 C -0.103 4.103 20 C -0.118 4.118 21 C -0.132 4.132 22 C -0.125 4.125 23 C -0.131 4.131 24 C -0.108 4.108 25 H 0.105 0.895 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.186 0.814 29 H 0.194 0.806 30 H 0.271 0.729 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.139 0.861 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.147 5.299 -7.072 8.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.197 6.197 3 C -0.011 4.011 4 N -0.211 5.211 5 C -0.213 4.213 6 C -0.090 4.090 7 N -0.251 5.251 8 C 0.070 3.930 9 N -0.107 5.107 10 C -0.422 4.422 11 H 0.108 0.892 12 C -0.201 4.201 13 N -0.531 5.531 14 Si 0.801 3.199 15 H -0.193 1.193 16 H -0.208 1.208 17 H -0.187 1.187 18 C 0.050 3.950 19 C -0.105 4.105 20 C -0.137 4.137 21 C -0.150 4.150 22 C -0.143 4.143 23 C -0.149 4.149 24 C -0.127 4.127 25 H 0.123 0.877 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.203 0.797 29 H 0.211 0.789 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.157 0.843 35 H 0.168 0.832 36 H 0.162 0.838 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.457 4.685 -6.873 8.445 hybrid contribution -0.682 -0.735 0.414 1.085 sum 0.775 3.950 -6.459 7.611 Atomic orbital electron populations 1.22871 0.79531 1.03058 1.01029 1.86891 1.21354 1.22843 1.88601 1.20253 0.89319 0.86219 1.05331 1.67759 1.39870 0.98798 1.14641 1.23142 0.94052 0.94681 1.09419 1.23666 0.92398 0.97194 0.95744 1.68071 1.38499 0.96713 1.21817 1.19500 0.86657 0.89031 0.97808 1.42363 1.03364 1.01359 1.63622 1.19628 1.18106 0.85019 1.19473 0.89217 1.26199 0.96981 1.03651 0.93238 1.70070 1.36266 1.33373 1.13437 0.85151 0.79377 0.77567 0.77794 1.19346 1.20833 1.18676 1.20158 0.80502 1.01985 0.92385 1.20479 0.98220 0.94244 0.97539 1.21127 0.99081 0.98260 0.95247 1.21353 0.99609 0.98517 0.95496 1.21428 1.00270 0.92099 1.00538 1.21423 0.99524 1.00110 0.93819 1.21280 0.98015 0.96205 0.97193 0.87714 0.93629 0.93188 0.79686 0.78913 0.91984 0.93126 0.89602 0.87865 0.84304 0.83248 0.83834 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.12 10.40 113.37 1.18 2.30 16 2 O -0.29 -13.81 6.70 -90.18 -0.60 -14.41 16 3 C 0.18 8.74 7.43 85.07 0.63 9.37 16 4 N -0.48 -20.19 9.39 -307.59 -2.89 -23.08 16 5 C -0.06 -1.93 11.21 84.58 0.95 -0.98 16 6 C 0.07 2.40 11.21 84.59 0.95 3.35 16 7 N -0.52 -22.55 8.33 -192.21 -1.60 -24.15 16 8 C 0.31 15.44 7.32 133.28 0.98 16.42 16 9 N -0.41 -21.22 2.57 -521.09 -1.34 -22.56 16 10 C -0.29 -15.46 7.45 84.05 0.63 -14.83 16 11 H 0.09 4.86 6.26 -2.91 -0.02 4.85 16 12 C 0.00 0.11 5.02 84.87 0.43 0.53 16 13 N -0.89 -48.17 11.52 21.65 0.25 -47.92 16 14 Si 0.98 40.88 29.58 68.60 2.03 42.91 16 15 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 16 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 17 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 18 C 0.17 8.31 5.00 85.63 0.43 8.74 16 19 C -0.10 -4.33 5.44 -19.87 -0.11 -4.44 16 20 C -0.12 -4.64 9.72 22.27 0.22 -4.43 16 21 C -0.13 -4.14 10.05 22.27 0.22 -3.91 16 22 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 23 C -0.13 -3.89 10.05 22.27 0.22 -3.67 16 24 C -0.11 -3.97 9.28 22.27 0.21 -3.76 16 25 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 26 H 0.04 1.61 8.11 -2.39 -0.02 1.59 16 27 H 0.05 1.70 8.11 -2.39 -0.02 1.68 16 28 H 0.19 4.72 8.06 -2.91 -0.02 4.70 16 29 H 0.19 4.72 8.06 -2.91 -0.02 4.70 16 30 H 0.27 13.77 8.31 -92.70 -0.77 13.00 16 31 H 0.05 2.46 7.53 -2.38 -0.02 2.44 16 32 H 0.09 4.47 5.70 -2.39 -0.01 4.46 16 33 H 0.10 4.29 8.06 -2.91 -0.02 4.27 16 34 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 37 H 0.12 4.50 7.36 -2.91 -0.02 4.48 16 Total: -1.00 -63.77 316.92 4.07 -59.70 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 1.08 Total: 28.06 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 7.15 Total: 1.45 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -5.58 Total: -117.71 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.60 Total: -14.41 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -63.77 4.07 -59.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993501.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.302 kcal (2) G-P(sol) polarization free energy of solvation -63.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds