Wall clock time and date at job start Tue Mar 31 2020 05:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35671 * 117.00186 * 2 1 4 4 C 1.39054 * 120.02001 * 179.97438 * 3 2 1 5 5 N 1.32100 * 120.11458 * 179.97438 * 4 3 2 6 6 C 1.32029 * 120.15213 * 0.03124 * 5 4 3 7 7 C 1.39235 * 120.03242 * 359.96886 * 6 5 4 8 8 N 1.38809 * 120.05525 * 179.97438 * 7 6 5 9 9 C 1.36898 * 119.99971 * 8.48566 * 8 7 6 10 10 H 1.08004 * 120.00081 * 321.08915 * 9 8 7 11 11 C 1.38820 * 119.99959 * 141.08993 * 9 8 7 12 12 N 1.31565 * 119.99851 * 157.55382 * 11 9 8 13 13 Si 1.86797 * 120.00223 * 337.54392 * 11 9 8 14 14 H 1.48496 * 109.47018 * 95.45894 * 13 11 9 15 15 H 1.48499 * 109.47621 * 215.46406 * 13 11 9 16 16 H 1.48507 * 109.46860 * 335.46416 * 13 11 9 17 17 C 1.46494 * 120.00254 * 188.48129 * 8 7 6 18 18 C 1.50703 * 109.47063 * 90.00155 * 17 8 7 19 19 C 1.38235 * 119.99743 * 269.72688 * 18 17 8 20 20 C 1.38238 * 119.99563 * 179.76441 * 19 18 17 21 21 C 1.38243 * 120.00112 * 0.51272 * 20 19 18 22 22 C 1.38236 * 119.99864 * 359.74269 * 21 20 19 23 23 C 1.38232 * 119.99765 * 90.00213 * 18 17 8 24 24 N 1.32516 * 120.01503 * 0.25569 * 3 2 1 25 25 H 1.09001 * 109.47380 * 299.99723 * 1 2 3 26 26 H 1.09004 * 109.47228 * 59.99867 * 1 2 3 27 27 H 1.09007 * 109.47197 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.93967 * 0.02562 * 4 3 2 29 29 H 1.08001 * 119.98027 * 179.97438 * 6 5 4 30 30 H 0.97001 * 119.99930 * 179.97438 * 12 11 9 31 31 H 1.09005 * 109.47598 * 210.00403 * 17 8 7 32 32 H 1.09003 * 109.46774 * 330.00302 * 17 8 7 33 33 H 1.07996 * 120.00485 * 359.97438 * 19 18 17 34 34 H 1.07994 * 120.00037 * 180.23308 * 20 19 18 35 35 H 1.07998 * 119.99985 * 179.72150 * 21 20 19 36 36 H 1.07994 * 120.00006 * 179.97438 * 22 21 20 37 37 H 1.08003 * 120.00179 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4335 1.2820 0.0005 5 7 4.0352 2.4580 0.0000 6 6 3.3210 3.5684 -0.0004 7 6 1.9302 3.5024 -0.0009 8 7 1.1788 4.6695 -0.0008 9 6 1.7942 5.8798 -0.1751 10 1 2.7535 6.0689 0.2837 11 6 1.1853 6.8642 -0.9415 12 7 1.5103 8.1273 -0.7689 13 14 -0.0952 6.3953 -2.2181 14 1 -1.4522 6.5261 -1.6292 15 1 0.0236 7.2961 -3.3927 16 1 0.1248 4.9907 -2.6472 17 6 -0.2729 4.6061 0.1857 18 6 -0.5950 4.6974 1.6551 19 6 -0.6849 3.5466 2.4157 20 6 -0.9755 3.6307 3.7646 21 6 -1.1867 4.8648 4.3506 22 6 -1.1020 6.0152 3.5888 23 6 -0.8061 5.9315 2.2410 24 7 1.3235 2.3204 0.0051 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0211 0.3758 0.0005 29 1 3.8158 4.5284 -0.0004 30 1 1.0851 8.8151 -1.3047 31 1 -0.7436 5.4358 -0.3416 32 1 -0.6493 3.6631 -0.2109 33 1 -0.5247 2.5821 1.9570 34 1 -1.0421 2.7319 4.3597 35 1 -1.4182 4.9301 5.4034 36 1 -1.2674 6.9793 4.0465 37 1 -0.7406 6.8302 1.6457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166993888.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:00 Heat of formation + Delta-G solvation = 59.964857 kcal Electronic energy + Delta-G solvation = -22535.783018 eV Core-core repulsion = 19279.454515 eV Total energy + Delta-G solvation = -3256.328503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36033 -38.94580 -37.91107 -36.33564 -33.05490 -32.24011 -31.38050 -30.48827 -29.25836 -27.09267 -26.10006 -24.85347 -22.82944 -22.12635 -21.82829 -20.82552 -18.27087 -17.35078 -16.84500 -16.31297 -15.98335 -15.65140 -15.60406 -14.96871 -14.73658 -14.46435 -14.00987 -13.77375 -13.12171 -13.02891 -12.97217 -12.76417 -12.16427 -12.09391 -11.90183 -11.60111 -11.39234 -11.06010 -10.96356 -10.69555 -10.60319 -10.44715 -10.30324 -10.02106 -9.29366 -8.62438 -8.52427 -8.51007 -8.23744 -6.99239 -6.72051 -4.21219 1.68347 1.81147 1.96398 2.17219 2.90933 3.08965 3.14679 3.48912 3.85639 3.95690 4.34034 4.50698 4.78814 5.16692 5.22730 5.25806 5.36157 5.41373 5.45189 5.47393 5.58277 5.59726 5.70997 5.80005 5.92614 6.02967 6.15140 6.25827 6.37975 6.40057 6.47017 6.82936 6.87737 6.95757 7.10735 7.19102 7.40462 7.57622 7.84463 8.12845 8.28043 8.71891 8.92239 9.23841 10.36345 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.011529 B = 0.008674 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.139897 B = 3227.238714 C = 4584.287739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.311 6.311 3 C 0.320 3.680 4 C -0.091 4.091 5 N -0.380 5.380 6 C -0.042 4.042 7 C 0.373 3.627 8 N -0.423 5.423 9 C -0.324 4.324 10 H 0.110 0.890 11 C 0.071 3.929 12 N -0.844 5.844 13 Si 0.870 3.130 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.259 1.259 17 C 0.143 3.857 18 C -0.085 4.085 19 C -0.102 4.102 20 C -0.132 4.132 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.089 4.089 24 N -0.586 5.586 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.151 0.849 29 H 0.167 0.833 30 H 0.280 0.720 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.500 -7.616 4.199 10.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.217 6.217 3 C 0.135 3.865 4 C -0.252 4.252 5 N -0.093 5.093 6 C -0.214 4.214 7 C 0.132 3.868 8 N -0.116 5.116 9 C -0.452 4.452 10 H 0.128 0.872 11 C -0.138 4.138 12 N -0.476 5.476 13 Si 0.697 3.303 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.183 1.183 17 C 0.019 3.981 18 C -0.086 4.086 19 C -0.121 4.121 20 C -0.150 4.150 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.107 4.107 24 N -0.326 5.326 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.168 0.832 29 H 0.184 0.816 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.543 -7.434 4.123 10.728 hybrid contribution -1.000 0.107 -0.635 1.190 sum -7.543 -7.327 3.488 11.079 Atomic orbital electron populations 1.22742 0.78431 1.02011 1.02203 1.86217 1.22041 1.25192 1.88217 1.20549 0.90319 0.84190 0.91416 1.21884 0.88948 0.96699 1.17693 1.68093 1.38301 0.97685 1.05189 1.22823 0.90136 0.97514 1.10903 1.19245 0.89730 0.85301 0.92562 1.42515 1.03862 1.02430 1.62750 1.18990 1.07824 0.86717 1.31632 0.87229 1.25331 0.97482 0.94608 0.96404 1.69806 1.41374 0.99403 1.37007 0.87018 0.81063 0.80162 0.82090 1.19745 1.20877 1.18320 1.20670 0.83201 1.02383 0.91802 1.20241 0.98450 0.93220 0.96706 1.21111 0.98843 0.98314 0.93794 1.21033 1.01616 0.97349 0.95020 1.21040 1.01332 0.92842 0.99260 1.21092 1.01075 0.98089 0.94231 1.21179 0.97017 0.97645 0.94888 1.67353 1.39431 0.97523 1.28342 0.92735 0.92678 0.89342 0.83163 0.81630 0.90998 0.90721 0.89872 0.86192 0.86802 0.86785 0.86473 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.39 101.05 1.05 1.61 16 2 O -0.31 -5.17 10.49 -18.71 -0.20 -5.37 16 3 C 0.32 6.16 7.49 -16.95 -0.13 6.03 16 4 C -0.09 -1.76 11.17 -17.13 -0.19 -1.95 16 5 N -0.38 -7.97 10.48 -12.70 -0.13 -8.10 16 6 C -0.04 -0.91 10.46 -17.10 -0.18 -1.09 16 7 C 0.37 8.27 7.31 -154.78 -1.13 7.14 16 8 N -0.42 -9.55 2.23 -116.24 -0.26 -9.81 16 9 C -0.32 -7.95 9.05 -15.07 -0.14 -8.09 16 10 H 0.11 2.86 6.77 -52.48 -0.36 2.51 16 11 C 0.07 1.76 5.29 -17.45 -0.09 1.66 16 12 N -0.84 -21.69 13.96 55.49 0.77 -20.92 16 13 Si 0.87 19.17 25.12 -169.99 -4.27 14.90 16 14 H -0.27 -5.66 6.68 56.52 0.38 -5.28 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 17 C 0.14 2.93 4.44 -5.20 -0.02 2.91 16 18 C -0.08 -1.62 5.46 -104.62 -0.57 -2.19 16 19 C -0.10 -1.77 9.70 -39.58 -0.38 -2.16 16 20 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 21 C -0.13 -1.86 10.05 -39.58 -0.40 -2.25 16 22 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 23 C -0.09 -1.64 9.70 -39.58 -0.38 -2.03 16 24 N -0.59 -11.99 7.93 -12.31 -0.10 -12.09 16 25 H 0.05 0.73 7.86 -51.93 -0.41 0.32 16 26 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.15 2.48 8.06 -52.49 -0.42 2.06 16 29 H 0.17 3.63 6.34 -52.49 -0.33 3.30 16 30 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.07 1.58 3.40 -51.93 -0.18 1.40 16 32 H 0.08 1.64 7.22 -51.93 -0.37 1.26 16 33 H 0.12 2.06 7.59 -52.49 -0.40 1.66 16 34 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 37 H 0.13 2.44 8.06 -52.48 -0.42 2.01 16 LS Contribution 315.75 15.07 4.76 4.76 Total: -1.00 -26.74 315.75 -6.95 -33.69 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -4.16 Total: 8.18 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -3.36 Total: -5.24 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.29 Total: -50.92 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.20 Total: -5.37 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.27 Total: 14.90 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -26.74 -6.95 -33.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993888.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.655 kcal (2) G-P(sol) polarization free energy of solvation -26.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds