Wall clock time and date at job start Tue Mar 31 2020 05:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35750 * 116.99961 * 2 1 4 4 C 1.39418 * 120.04925 * 180.02562 * 3 2 1 5 5 C 1.38376 * 117.99730 * 179.97438 * 4 3 2 6 6 C 1.39675 * 117.95079 * 0.02562 * 5 4 3 7 7 N 1.39009 * 120.10173 * 179.97438 * 6 5 4 8 8 C 1.36888 * 120.00131 * 352.12151 * 7 6 5 9 9 H 1.08000 * 119.99844 * 324.30573 * 8 7 6 10 10 C 1.38795 * 119.99904 * 144.30411 * 8 7 6 11 11 N 1.31586 * 119.99965 * 337.87004 * 10 8 7 12 12 Si 1.86798 * 119.99562 * 157.87104 * 10 8 7 13 13 H 1.48499 * 109.47471 * 90.00369 * 12 10 8 14 14 H 1.48504 * 109.46869 * 209.99960 * 12 10 8 15 15 H 1.48498 * 109.47294 * 329.99700 * 12 10 8 16 16 C 1.46498 * 119.99962 * 172.12452 * 7 6 5 17 17 C 1.50694 * 109.47223 * 90.00003 * 16 7 6 18 18 C 1.38235 * 119.99791 * 269.72474 * 17 16 7 19 19 C 1.38244 * 119.99818 * 179.76726 * 18 17 16 20 20 C 1.38233 * 119.99761 * 0.51150 * 19 18 17 21 21 C 1.38237 * 120.00205 * 359.74177 * 20 19 18 22 22 C 1.38231 * 119.99767 * 0.02562 * 21 20 19 23 23 N 1.32433 * 119.79703 * 359.97438 * 6 5 4 24 24 N 1.28354 * 122.13951 * 0.02562 * 23 6 5 25 25 H 1.08997 * 109.46754 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46629 * 299.99570 * 1 2 3 27 27 H 1.08995 * 109.47161 * 59.99564 * 1 2 3 28 28 H 1.08008 * 121.00221 * 359.96333 * 4 3 2 29 29 H 1.08000 * 121.02306 * 179.73054 * 5 4 3 30 30 H 0.96997 * 119.99533 * 175.63989 * 11 10 8 31 31 H 1.08999 * 109.46986 * 209.99926 * 16 7 6 32 32 H 1.09004 * 109.46950 * 329.99550 * 16 7 6 33 33 H 1.07997 * 120.00248 * 359.97438 * 18 17 16 34 34 H 1.07998 * 120.00075 * 180.23024 * 19 18 17 35 35 H 1.07998 * 119.99838 * 179.72671 * 20 19 18 36 36 H 1.07994 * 119.99966 * 179.97438 * 21 20 19 37 37 H 1.08009 * 119.99860 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 3.4375 1.2837 -0.0005 5 6 4.0212 2.5384 -0.0011 6 6 3.1786 3.6524 -0.0005 7 7 3.7172 4.9339 -0.0004 8 6 5.0651 5.1098 0.1615 9 1 5.6200 4.4559 0.8179 10 6 5.7185 6.1287 -0.5178 11 7 5.1892 6.6358 -1.6106 12 14 7.3492 6.7798 0.1194 13 1 8.4620 6.0022 -0.4825 14 1 7.4891 8.2113 -0.2505 15 1 7.3930 6.6440 1.5975 16 6 2.8424 6.0961 -0.1736 17 6 2.3635 6.5698 1.1744 18 6 1.1926 6.0652 1.7083 19 6 0.7558 6.4961 2.9472 20 6 1.4845 7.4394 3.6472 21 6 2.6527 7.9479 3.1109 22 6 3.0919 7.5134 1.8743 23 7 1.8650 3.4840 0.0001 24 7 1.3259 2.3191 0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 4.0423 0.3888 -0.0004 29 1 5.0951 2.6527 0.0029 30 1 5.6129 7.3896 -2.0499 31 1 3.3951 6.8969 -0.6648 32 1 1.9851 5.8174 -0.7865 33 1 0.6207 5.3318 1.1593 34 1 -0.1571 6.0992 3.3660 35 1 1.1409 7.7794 4.6130 36 1 3.2218 8.6852 3.6576 37 1 4.0045 7.9110 1.4551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166993900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:51 Heat of formation + Delta-G solvation = 63.459607 kcal Electronic energy + Delta-G solvation = -22127.454755 eV Core-core repulsion = 18871.277796 eV Total energy + Delta-G solvation = -3256.176959 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.10288 -38.71126 -37.68819 -36.02885 -32.34844 -32.24074 -31.09848 -30.26523 -29.02853 -27.03036 -26.11672 -24.46035 -22.93508 -21.92696 -21.82563 -20.46161 -17.99076 -17.47164 -16.67900 -16.43848 -15.80691 -15.48012 -14.90296 -14.58197 -14.35190 -14.04515 -13.64207 -13.51503 -13.27829 -12.83579 -12.66158 -12.63902 -12.03213 -11.68306 -11.58709 -11.40623 -11.32013 -10.98679 -10.77222 -10.69324 -10.52429 -10.38153 -10.21899 -9.64479 -9.14449 -8.63632 -8.55072 -8.31309 -8.11844 -7.03118 -6.47263 -4.13743 1.78971 1.92844 2.01600 2.25852 3.02865 3.10462 3.14758 3.69673 3.90372 4.30620 4.49512 4.74281 4.87014 5.31822 5.43228 5.47551 5.50448 5.54585 5.58749 5.65648 5.85084 5.86889 5.91068 6.03416 6.10451 6.20778 6.34371 6.45095 6.61160 6.67802 6.72828 6.97313 7.03191 7.04856 7.10266 7.21720 7.42969 7.63089 7.81734 7.90984 8.39170 9.00326 9.28543 9.95619 10.40530 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.012916 B = 0.006899 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.251728 B = 4057.309763 C = 5734.388649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.319 6.319 3 C 0.147 3.853 4 C -0.099 4.099 5 C -0.143 4.143 6 C 0.298 3.702 7 N -0.401 5.401 8 C -0.314 4.314 9 H 0.090 0.910 10 C 0.042 3.958 11 N -0.850 5.850 12 Si 0.913 3.087 13 H -0.274 1.274 14 H -0.278 1.278 15 H -0.266 1.266 16 C 0.152 3.848 17 C -0.081 4.081 18 C -0.099 4.099 19 C -0.134 4.134 20 C -0.133 4.133 21 C -0.134 4.134 22 C -0.096 4.096 23 N -0.315 5.315 24 N -0.260 5.260 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.135 0.865 29 H 0.147 0.853 30 H 0.273 0.727 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.131 0.869 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.777 -1.954 4.692 6.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.226 6.226 3 C -0.045 4.045 4 C -0.128 4.128 5 C -0.177 4.177 6 C 0.054 3.946 7 N -0.095 5.095 8 C -0.442 4.442 9 H 0.108 0.892 10 C -0.165 4.165 11 N -0.484 5.484 12 Si 0.739 3.261 13 H -0.200 1.200 14 H -0.204 1.204 15 H -0.191 1.191 16 C 0.028 3.972 17 C -0.082 4.082 18 C -0.118 4.118 19 C -0.152 4.152 20 C -0.151 4.151 21 C -0.152 4.152 22 C -0.115 4.115 23 N -0.174 5.174 24 N -0.114 5.114 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.153 0.847 29 H 0.165 0.835 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.086 0.914 33 H 0.149 0.851 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.953 -1.189 4.471 6.778 hybrid contribution 2.038 -0.247 0.351 2.083 sum -2.915 -1.437 4.822 5.815 Atomic orbital electron populations 1.22664 0.78816 1.01697 1.01927 1.86080 1.21425 1.24663 1.90407 1.20796 0.90576 0.86364 1.06760 1.21069 0.91995 0.98410 1.01301 1.21655 1.01706 0.90356 1.03994 1.20311 0.90518 0.88209 0.95566 1.42119 1.05386 0.98844 1.63134 1.19377 0.82205 1.18354 1.24307 0.89207 1.25357 0.99301 0.98614 0.93258 1.70032 1.41370 1.23403 1.13635 0.86141 0.81675 0.78534 0.79770 1.19978 1.20359 1.19059 1.20539 0.93971 0.91098 0.91575 1.20586 0.94036 0.95215 0.98371 1.21377 0.96476 0.98627 0.95316 1.21070 0.99972 0.98463 0.95689 1.20973 0.96100 0.98559 0.99516 1.21029 0.96976 1.00910 0.96306 1.21097 0.99009 0.96943 0.94468 1.72574 1.09052 1.12365 1.23388 1.72450 1.32164 0.94239 1.12516 0.89684 0.93013 0.92970 0.84716 0.83496 0.91658 0.86713 0.91370 0.85065 0.87029 0.87198 0.87005 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.40 101.05 1.05 1.68 16 2 O -0.32 -5.68 10.49 -18.96 -0.20 -5.88 16 3 C 0.15 2.96 7.57 -16.94 -0.13 2.83 16 4 C -0.10 -1.88 10.15 -39.09 -0.40 -2.28 16 5 C -0.14 -2.98 9.34 -38.99 -0.36 -3.34 16 6 C 0.30 6.91 7.39 -154.78 -1.14 5.77 16 7 N -0.40 -9.50 2.62 -116.17 -0.30 -9.81 16 8 C -0.31 -7.49 8.38 -15.09 -0.13 -7.61 16 9 H 0.09 2.10 7.11 -52.49 -0.37 1.72 16 10 C 0.04 0.98 4.95 -17.45 -0.09 0.90 16 11 N -0.85 -20.86 11.37 55.49 0.63 -20.23 16 12 Si 0.91 18.28 29.61 -169.99 -5.03 13.25 16 13 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 14 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 15 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 16 C 0.15 3.41 5.10 -5.20 -0.03 3.39 16 17 C -0.08 -1.65 5.46 -104.63 -0.57 -2.23 16 18 C -0.10 -1.92 9.49 -39.58 -0.38 -2.30 16 19 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 20 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 21 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 22 C -0.10 -1.86 9.70 -39.58 -0.38 -2.24 16 23 N -0.32 -7.22 9.21 31.25 0.29 -6.93 16 24 N -0.26 -5.63 10.39 30.53 0.32 -5.31 16 25 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 27 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 28 H 0.13 2.11 8.06 -52.48 -0.42 1.68 16 29 H 0.15 2.90 6.72 -52.49 -0.35 2.55 16 30 H 0.27 6.32 8.32 -40.82 -0.34 5.98 16 31 H 0.12 2.73 5.35 -51.93 -0.28 2.45 16 32 H 0.07 1.56 7.47 -51.93 -0.39 1.17 16 33 H 0.13 2.63 7.09 -52.49 -0.37 2.25 16 34 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 319.80 15.07 4.82 4.82 Total: -1.00 -26.85 319.80 -7.51 -34.36 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -4.28 Total: 8.99 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -3.75 Total: -13.25 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.93 Total: -42.28 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.20 Total: -5.88 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.85 -7.51 -34.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.818 kcal (2) G-P(sol) polarization free energy of solvation -26.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds