Wall clock time and date at job start Tue Mar 31 2020 05:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35750 * 116.99961 * 2 1 4 4 C 1.39418 * 120.04925 * 180.02562 * 3 2 1 5 5 C 1.38376 * 117.99730 * 179.97438 * 4 3 2 6 6 C 1.39675 * 117.95079 * 0.02562 * 5 4 3 7 7 N 1.39009 * 120.10173 * 179.97438 * 6 5 4 8 8 C 1.36888 * 120.00131 * 352.12151 * 7 6 5 9 9 H 1.08000 * 119.99844 * 324.30573 * 8 7 6 10 10 C 1.38795 * 119.99904 * 144.30411 * 8 7 6 11 11 N 1.31586 * 119.99965 * 337.87004 * 10 8 7 12 12 Si 1.86798 * 119.99562 * 157.87104 * 10 8 7 13 13 H 1.48499 * 109.47471 * 90.00369 * 12 10 8 14 14 H 1.48504 * 109.46869 * 209.99960 * 12 10 8 15 15 H 1.48498 * 109.47294 * 329.99700 * 12 10 8 16 16 C 1.46498 * 119.99962 * 172.12452 * 7 6 5 17 17 C 1.50694 * 109.47223 * 90.00003 * 16 7 6 18 18 C 1.38235 * 119.99791 * 269.72474 * 17 16 7 19 19 C 1.38244 * 119.99818 * 179.76726 * 18 17 16 20 20 C 1.38233 * 119.99761 * 0.51150 * 19 18 17 21 21 C 1.38237 * 120.00205 * 359.74177 * 20 19 18 22 22 C 1.38231 * 119.99767 * 0.02562 * 21 20 19 23 23 N 1.32433 * 119.79703 * 359.97438 * 6 5 4 24 24 N 1.28354 * 122.13951 * 0.02562 * 23 6 5 25 25 H 1.08997 * 109.46754 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46629 * 299.99570 * 1 2 3 27 27 H 1.08995 * 109.47161 * 59.99564 * 1 2 3 28 28 H 1.08008 * 121.00221 * 359.96333 * 4 3 2 29 29 H 1.08000 * 121.02306 * 179.73054 * 5 4 3 30 30 H 0.96997 * 119.99533 * 175.63989 * 11 10 8 31 31 H 1.08999 * 109.46986 * 209.99926 * 16 7 6 32 32 H 1.09004 * 109.46950 * 329.99550 * 16 7 6 33 33 H 1.07997 * 120.00248 * 359.97438 * 18 17 16 34 34 H 1.07998 * 120.00075 * 180.23024 * 19 18 17 35 35 H 1.07998 * 119.99838 * 179.72671 * 20 19 18 36 36 H 1.07994 * 119.99966 * 179.97438 * 21 20 19 37 37 H 1.08009 * 119.99860 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 3.4375 1.2837 -0.0005 5 6 4.0212 2.5384 -0.0011 6 6 3.1786 3.6524 -0.0005 7 7 3.7172 4.9339 -0.0004 8 6 5.0651 5.1098 0.1615 9 1 5.6200 4.4559 0.8179 10 6 5.7185 6.1287 -0.5178 11 7 5.1892 6.6358 -1.6106 12 14 7.3492 6.7798 0.1194 13 1 8.4620 6.0022 -0.4825 14 1 7.4891 8.2113 -0.2505 15 1 7.3930 6.6440 1.5975 16 6 2.8424 6.0961 -0.1736 17 6 2.3635 6.5698 1.1744 18 6 1.1926 6.0652 1.7083 19 6 0.7558 6.4961 2.9472 20 6 1.4845 7.4394 3.6472 21 6 2.6527 7.9479 3.1109 22 6 3.0919 7.5134 1.8743 23 7 1.8650 3.4840 0.0001 24 7 1.3259 2.3191 0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 4.0423 0.3888 -0.0004 29 1 5.0951 2.6527 0.0029 30 1 5.6129 7.3896 -2.0499 31 1 3.3951 6.8969 -0.6648 32 1 1.9851 5.8174 -0.7865 33 1 0.6207 5.3318 1.1593 34 1 -0.1571 6.0992 3.3660 35 1 1.1409 7.7794 4.6130 36 1 3.2218 8.6852 3.6576 37 1 4.0045 7.9110 1.4551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166993900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:50 Heat of formation + Delta-G solvation = 49.222131 kcal Electronic energy + Delta-G solvation = -22128.072138 eV Core-core repulsion = 18871.277796 eV Total energy + Delta-G solvation = -3256.794342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.73288 -40.16791 -39.15963 -37.66238 -34.10363 -33.84304 -32.60049 -31.65688 -30.66622 -28.40796 -27.68658 -26.16253 -24.48957 -23.50117 -23.27884 -21.96801 -19.59050 -19.08495 -18.26899 -18.03760 -17.32695 -16.93698 -16.56107 -16.02163 -15.81825 -15.49003 -15.16591 -15.06130 -14.87903 -14.28619 -14.14847 -14.11065 -13.58472 -13.24108 -13.11076 -12.91966 -12.70024 -12.56412 -12.32765 -12.25783 -12.11275 -11.88908 -11.71521 -11.31006 -10.79830 -10.29353 -10.18327 -9.70928 -9.55304 -8.77958 -8.21829 -5.95742 0.16406 0.50585 0.61350 0.63213 1.44106 1.46900 1.57724 2.18432 2.34585 2.75642 2.81962 3.10922 3.20172 3.74753 3.95238 4.08458 4.16571 4.23606 4.28094 4.34833 4.42284 4.50347 4.56000 4.57982 4.77036 4.78313 4.84514 4.90286 5.09972 5.18632 5.24727 5.32560 5.34351 5.42305 5.67227 5.69838 5.92759 6.08894 6.25052 6.39279 6.62121 7.24793 7.54197 8.27096 8.65408 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.012916 B = 0.006899 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.251728 B = 4057.309763 C = 5734.388649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.320 6.320 3 C 0.151 3.849 4 C -0.088 4.088 5 C -0.153 4.153 6 C 0.278 3.722 7 N -0.417 5.417 8 C -0.327 4.327 9 H 0.090 0.910 10 C 0.008 3.992 11 N -0.884 5.884 12 Si 0.975 3.025 13 H -0.271 1.271 14 H -0.277 1.277 15 H -0.263 1.263 16 C 0.162 3.838 17 C -0.100 4.100 18 C -0.116 4.116 19 C -0.133 4.133 20 C -0.124 4.124 21 C -0.130 4.130 22 C -0.114 4.114 23 N -0.332 5.332 24 N -0.278 5.278 25 H 0.127 0.873 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.174 0.826 29 H 0.155 0.845 30 H 0.274 0.726 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.115 0.885 34 H 0.138 0.862 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.736 -2.713 6.757 8.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.226 6.226 3 C -0.042 4.042 4 C -0.116 4.116 5 C -0.187 4.187 6 C 0.034 3.966 7 N -0.112 5.112 8 C -0.456 4.456 9 H 0.108 0.892 10 C -0.196 4.196 11 N -0.519 5.519 12 Si 0.799 3.201 13 H -0.197 1.197 14 H -0.202 1.202 15 H -0.187 1.187 16 C 0.038 3.962 17 C -0.102 4.102 18 C -0.134 4.134 19 C -0.151 4.151 20 C -0.142 4.142 21 C -0.148 4.148 22 C -0.133 4.133 23 N -0.190 5.190 24 N -0.132 5.132 25 H 0.145 0.855 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.192 0.808 29 H 0.172 0.828 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.066 0.934 33 H 0.133 0.867 34 H 0.156 0.844 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.944 -1.978 6.540 8.433 hybrid contribution 1.865 -0.184 -0.279 1.894 sum -3.079 -2.162 6.261 7.304 Atomic orbital electron populations 1.22970 0.76757 1.04369 1.01534 1.86100 1.23436 1.23093 1.89957 1.21118 0.91337 0.86766 1.04942 1.21449 0.91990 0.99007 0.99175 1.21833 1.02011 0.90581 1.04301 1.20660 0.91159 0.88822 0.95937 1.42225 1.05480 0.99189 1.64341 1.19561 0.82554 1.18973 1.24473 0.89237 1.26065 1.01987 0.98490 0.93044 1.70122 1.42944 1.24022 1.14857 0.85206 0.77968 0.77800 0.79164 1.19679 1.20220 1.18725 1.20296 0.92762 0.90385 0.92739 1.20454 0.95200 0.96652 0.97880 1.21314 0.96334 0.99104 0.96698 1.21391 1.00880 0.98277 0.94515 1.21414 0.95024 0.97082 1.00632 1.21380 0.97403 1.00848 0.95124 1.21116 0.98928 0.97370 0.95877 1.72561 1.09213 1.13156 1.24072 1.72393 1.32661 0.94512 1.13639 0.85493 0.93312 0.93480 0.80831 0.82758 0.91621 0.88565 0.93358 0.86691 0.84405 0.83146 0.83919 0.87501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.01 10.40 113.37 1.18 2.19 16 2 O -0.32 -10.69 10.49 -90.76 -0.95 -11.64 16 3 C 0.15 5.92 7.57 84.92 0.64 6.56 16 4 C -0.09 -3.20 10.15 22.59 0.23 -2.97 16 5 C -0.15 -6.40 9.34 22.65 0.21 -6.18 16 6 C 0.28 13.28 7.39 133.18 0.98 14.27 16 7 N -0.42 -20.59 2.62 -521.46 -1.37 -21.95 16 8 C -0.33 -16.06 8.38 84.04 0.70 -15.35 16 9 H 0.09 4.26 7.11 -2.91 -0.02 4.24 16 10 C 0.01 0.40 4.95 84.86 0.42 0.82 16 11 N -0.88 -45.06 11.37 21.65 0.25 -44.81 16 12 Si 0.98 37.89 29.61 68.60 2.03 39.92 16 13 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 14 H -0.28 -10.59 7.11 99.48 0.71 -9.89 16 15 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 16 C 0.16 7.74 5.10 85.63 0.44 8.18 16 17 C -0.10 -4.28 5.46 -19.87 -0.11 -4.39 16 18 C -0.12 -4.57 9.49 22.27 0.21 -4.35 16 19 C -0.13 -4.26 10.05 22.27 0.22 -4.04 16 20 C -0.12 -3.52 10.05 22.27 0.22 -3.30 16 21 C -0.13 -4.06 10.05 22.27 0.22 -3.83 16 22 C -0.11 -4.43 9.70 22.27 0.22 -4.21 16 23 N -0.33 -15.71 9.21 -55.03 -0.51 -16.22 16 24 N -0.28 -12.15 10.39 -170.16 -1.77 -13.92 16 25 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.05 1.31 8.11 -2.39 -0.02 1.29 16 27 H 0.05 1.28 8.11 -2.39 -0.02 1.26 16 28 H 0.17 4.87 8.06 -2.91 -0.02 4.85 16 29 H 0.15 6.10 6.72 -2.91 -0.02 6.08 16 30 H 0.27 13.15 8.32 -92.71 -0.77 12.38 16 31 H 0.10 4.91 5.35 -2.39 -0.01 4.89 16 32 H 0.05 2.39 7.47 -2.38 -0.02 2.38 16 33 H 0.12 4.83 7.09 -2.91 -0.02 4.81 16 34 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 35 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 37 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -59.73 319.80 4.56 -55.16 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 1.08 Total: 30.08 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 5.80 Total: -16.61 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -3.40 Total: -96.91 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.95 Total: -11.64 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -59.73 4.56 -55.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.382 kcal (2) G-P(sol) polarization free energy of solvation -59.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds