Wall clock time and date at job start Tue Mar 31 2020 05:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35543 * 117.00296 * 2 1 4 4 C 1.38977 * 120.46855 * 179.97438 * 3 2 1 5 5 C 1.39293 * 118.27464 * 180.02562 * 4 3 2 6 6 N 1.38586 * 120.50750 * 180.02562 * 5 4 3 7 7 C 1.36932 * 119.99647 * 8.21633 * 6 5 4 8 8 H 1.07995 * 120.00617 * 34.39356 * 7 6 5 9 9 C 1.38845 * 119.99530 * 214.11943 * 7 6 5 10 10 N 1.31536 * 120.00634 * 23.26767 * 9 7 6 11 11 Si 1.86812 * 119.99783 * 203.27534 * 9 7 6 12 12 H 1.48495 * 109.47185 * 89.99731 * 11 9 7 13 13 H 1.48497 * 109.46932 * 209.99484 * 11 9 7 14 14 H 1.48500 * 109.46921 * 329.99587 * 11 9 7 15 15 C 1.46499 * 119.99868 * 188.21299 * 6 5 4 16 16 C 1.50700 * 109.47503 * 269.99907 * 15 6 5 17 17 C 1.38238 * 120.00050 * 269.73528 * 16 15 6 18 18 C 1.38229 * 120.00095 * 179.76512 * 17 16 15 19 19 C 1.38239 * 119.99697 * 0.50104 * 18 17 16 20 20 C 1.38240 * 120.00096 * 359.74952 * 19 18 17 21 21 C 1.38227 * 119.99717 * 359.97438 * 20 19 18 22 22 N 1.33222 * 118.99168 * 0.27834 * 5 4 3 23 23 C 1.31679 * 120.83104 * 359.43894 * 22 5 4 24 24 N 1.31808 * 121.91375 * 0.57472 * 23 22 5 25 25 H 1.09002 * 109.47840 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47194 * 299.99975 * 1 2 3 27 27 H 1.09005 * 109.47465 * 59.99699 * 1 2 3 28 28 H 1.08001 * 120.86348 * 0.05051 * 4 3 2 29 29 H 0.96994 * 120.00511 * 184.49672 * 10 9 7 30 30 H 1.08999 * 109.47042 * 30.00284 * 15 6 5 31 31 H 1.09003 * 109.47058 * 150.00136 * 15 6 5 32 32 H 1.08002 * 119.99534 * 359.97438 * 17 16 15 33 33 H 1.07994 * 120.00296 * 180.22725 * 18 17 16 34 34 H 1.08006 * 120.00130 * 179.72612 * 19 18 17 35 35 H 1.07997 * 119.99468 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.99557 * 179.97438 * 21 20 19 37 37 H 1.08000 * 119.04708 * 180.29212 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 3.4316 1.2917 0.0005 5 6 4.0161 2.5560 0.0011 6 7 5.3951 2.6937 0.0011 7 6 6.1928 1.5938 -0.1689 8 1 5.8728 0.7890 -0.8141 9 6 7.4158 1.5157 0.4838 10 7 7.6236 2.2163 1.5776 11 14 8.7665 0.4160 -0.1915 12 1 9.6046 1.1887 -1.1431 13 1 9.6114 -0.0740 0.9270 14 1 8.1571 -0.7410 -0.8953 15 6 5.9993 4.0158 0.1829 16 6 6.1863 4.6718 -1.1609 17 6 7.3647 4.4906 -1.8605 18 6 7.5344 5.0884 -3.0953 19 6 6.5296 5.8758 -3.6258 20 6 5.3532 6.0612 -2.9239 21 6 5.1814 5.4588 -1.6917 22 7 3.2293 3.6311 0.0067 23 6 1.9183 3.5080 0.0006 24 7 1.3292 2.3289 0.0001 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 4.0407 0.3998 0.0001 29 1 8.4981 2.2127 1.9970 30 1 5.3458 4.6321 0.8003 31 1 6.9671 3.9088 0.6727 32 1 8.1515 3.8793 -1.4438 33 1 8.4535 4.9439 -3.6435 34 1 6.6639 6.3465 -4.5886 35 1 4.5685 6.6767 -3.3383 36 1 4.2625 5.6040 -1.1431 37 1 1.3079 4.3989 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166994064.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:55 Heat of formation + Delta-G solvation = 50.499117 kcal Electronic energy + Delta-G solvation = -22144.253892 eV Core-core repulsion = 18887.514924 eV Total energy + Delta-G solvation = -3256.738968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.04504 -38.74562 -37.73083 -36.15205 -32.55885 -31.58060 -31.08471 -30.29314 -29.51614 -26.88410 -26.15465 -24.38512 -23.04561 -21.93276 -21.56837 -20.44380 -18.30650 -17.17677 -16.71959 -16.08682 -15.48348 -15.39860 -14.74080 -14.53001 -14.32842 -14.16892 -14.06042 -13.56920 -13.37308 -13.10566 -12.83536 -12.67083 -12.06578 -11.68116 -11.58875 -11.46115 -11.31434 -11.01814 -10.89425 -10.54311 -10.41258 -10.27744 -9.89453 -9.53449 -8.99334 -8.40519 -8.34190 -8.28987 -8.09861 -7.22332 -6.54463 -4.16356 1.90007 1.98413 2.17782 2.44899 3.07132 3.11825 3.14590 3.61836 3.91823 4.30616 4.61680 4.76480 5.01799 5.02686 5.40617 5.44653 5.51000 5.56269 5.58560 5.63303 5.83858 5.89820 6.07237 6.16492 6.24324 6.35000 6.55020 6.57971 6.68408 6.69781 6.93910 7.00585 7.02030 7.07230 7.24662 7.40752 7.60005 7.83648 7.87654 8.09645 8.44871 9.01498 9.08529 9.56692 10.38207 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.012250 B = 0.007157 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.160074 B = 3911.091489 C = 5560.876728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.313 6.313 3 C 0.362 3.638 4 C -0.311 4.311 5 C 0.413 3.587 6 N -0.391 5.391 7 C -0.312 4.312 8 H 0.095 0.905 9 C 0.043 3.957 10 N -0.848 5.848 11 Si 0.916 3.084 12 H -0.273 1.273 13 H -0.281 1.281 14 H -0.265 1.265 15 C 0.148 3.852 16 C -0.080 4.080 17 C -0.097 4.097 18 C -0.134 4.134 19 C -0.133 4.133 20 C -0.135 4.135 21 C -0.098 4.098 22 N -0.607 5.607 23 C 0.354 3.646 24 N -0.653 5.653 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.137 0.863 29 H 0.274 0.726 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.761 3.258 -4.671 6.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.219 6.219 3 C 0.183 3.817 4 C -0.342 4.342 5 C 0.169 3.831 6 N -0.080 5.080 7 C -0.440 4.440 8 H 0.113 0.887 9 C -0.165 4.165 10 N -0.482 5.482 11 Si 0.742 3.258 12 H -0.198 1.198 13 H -0.206 1.206 14 H -0.190 1.190 15 C 0.025 3.975 16 C -0.081 4.081 17 C -0.116 4.116 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.153 4.153 21 C -0.116 4.116 22 N -0.338 5.338 23 C 0.062 3.938 24 N -0.392 5.392 25 H 0.104 0.896 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.155 0.845 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.149 0.851 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.692 3.687 -4.438 6.850 hybrid contribution 0.891 -1.155 -0.382 1.507 sum -2.801 2.532 -4.820 6.123 Atomic orbital electron populations 1.22683 0.78488 1.01755 1.02039 1.86173 1.21909 1.25701 1.88159 1.19573 0.88895 0.84129 0.89060 1.20734 0.91616 0.99248 1.22571 1.18473 0.86402 0.87683 0.90525 1.42309 0.98924 1.06256 1.60559 1.19519 0.99629 0.99352 1.25548 0.88731 1.25368 0.99764 0.98065 0.93293 1.70013 1.23601 1.40660 1.13945 0.86072 0.80521 0.80426 0.78791 1.19836 1.20641 1.18969 1.20601 1.02290 0.82832 0.91766 1.20545 0.93372 0.95959 0.98254 1.21123 0.97746 0.98214 0.94479 1.21036 0.98910 0.98920 0.96305 1.20982 0.94482 1.00113 0.99527 1.21065 0.97375 1.01078 0.95773 1.21333 0.98930 0.96076 0.95307 1.67845 1.05820 1.32735 1.27381 1.23846 0.87821 0.93217 0.88879 1.67871 1.41189 0.98814 1.31363 0.89617 0.92776 0.92811 0.84507 0.91591 0.91165 0.86556 0.86365 0.86988 0.87174 0.87015 0.85105 0.80547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.66 10.41 101.05 1.05 1.71 16 2 O -0.31 -6.01 10.49 -18.32 -0.19 -6.20 16 3 C 0.36 7.74 7.52 -16.78 -0.13 7.61 16 4 C -0.31 -7.23 9.28 -38.92 -0.36 -7.59 16 5 C 0.41 9.75 7.32 -154.66 -1.13 8.61 16 6 N -0.39 -9.42 2.62 -116.18 -0.30 -9.73 16 7 C -0.31 -7.71 8.43 -15.05 -0.13 -7.84 16 8 H 0.10 2.36 7.09 -52.49 -0.37 1.99 16 9 C 0.04 1.02 4.94 -17.45 -0.09 0.93 16 10 N -0.85 -21.03 11.34 55.49 0.63 -20.41 16 11 Si 0.92 18.78 29.61 -169.99 -5.03 13.74 16 12 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 13 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 14 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 15 C 0.15 3.31 5.11 -5.19 -0.03 3.28 16 16 C -0.08 -1.61 5.46 -104.62 -0.57 -2.18 16 17 C -0.10 -1.86 9.70 -39.58 -0.38 -2.24 16 18 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 19 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 20 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 21 C -0.10 -1.81 9.49 -39.59 -0.38 -2.19 16 22 N -0.61 -12.98 8.17 -13.85 -0.11 -13.09 16 23 C 0.35 6.77 12.28 -92.24 -1.13 5.64 16 24 N -0.65 -13.07 9.38 -14.72 -0.14 -13.21 16 25 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 27 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 28 H 0.14 3.25 6.72 -52.49 -0.35 2.90 16 29 H 0.27 6.38 8.32 -40.82 -0.34 6.04 16 30 H 0.07 1.56 7.48 -51.93 -0.39 1.17 16 31 H 0.12 2.76 5.28 -51.93 -0.27 2.48 16 32 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.13 2.41 7.07 -52.48 -0.37 2.04 16 37 H 0.18 2.62 8.06 -52.49 -0.42 2.20 16 LS Contribution 319.65 15.07 4.82 4.82 Total: -1.00 -27.27 319.65 -9.07 -36.34 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -4.27 Total: 9.66 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -4.47 Total: -1.92 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.07 Total: -56.44 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.19 Total: -6.20 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.27 -9.07 -36.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166994064.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.840 kcal (2) G-P(sol) polarization free energy of solvation -27.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds