Wall clock time and date at job start Tue Mar 31 2020 05:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35543 * 117.00296 * 2 1 4 4 C 1.38977 * 120.46855 * 179.97438 * 3 2 1 5 5 C 1.39293 * 118.27464 * 180.02562 * 4 3 2 6 6 N 1.38586 * 120.50750 * 180.02562 * 5 4 3 7 7 C 1.36932 * 119.99647 * 8.21633 * 6 5 4 8 8 H 1.07995 * 120.00617 * 34.39356 * 7 6 5 9 9 C 1.38845 * 119.99530 * 214.11943 * 7 6 5 10 10 N 1.31536 * 120.00634 * 23.26767 * 9 7 6 11 11 Si 1.86812 * 119.99783 * 203.27534 * 9 7 6 12 12 H 1.48495 * 109.47185 * 89.99731 * 11 9 7 13 13 H 1.48497 * 109.46932 * 209.99484 * 11 9 7 14 14 H 1.48500 * 109.46921 * 329.99587 * 11 9 7 15 15 C 1.46499 * 119.99868 * 188.21299 * 6 5 4 16 16 C 1.50700 * 109.47503 * 269.99907 * 15 6 5 17 17 C 1.38238 * 120.00050 * 269.73528 * 16 15 6 18 18 C 1.38229 * 120.00095 * 179.76512 * 17 16 15 19 19 C 1.38239 * 119.99697 * 0.50104 * 18 17 16 20 20 C 1.38240 * 120.00096 * 359.74952 * 19 18 17 21 21 C 1.38227 * 119.99717 * 359.97438 * 20 19 18 22 22 N 1.33222 * 118.99168 * 0.27834 * 5 4 3 23 23 C 1.31679 * 120.83104 * 359.43894 * 22 5 4 24 24 N 1.31808 * 121.91375 * 0.57472 * 23 22 5 25 25 H 1.09002 * 109.47840 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47194 * 299.99975 * 1 2 3 27 27 H 1.09005 * 109.47465 * 59.99699 * 1 2 3 28 28 H 1.08001 * 120.86348 * 0.05051 * 4 3 2 29 29 H 0.96994 * 120.00511 * 184.49672 * 10 9 7 30 30 H 1.08999 * 109.47042 * 30.00284 * 15 6 5 31 31 H 1.09003 * 109.47058 * 150.00136 * 15 6 5 32 32 H 1.08002 * 119.99534 * 359.97438 * 17 16 15 33 33 H 1.07994 * 120.00296 * 180.22725 * 18 17 16 34 34 H 1.08006 * 120.00130 * 179.72612 * 19 18 17 35 35 H 1.07997 * 119.99468 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.99557 * 179.97438 * 21 20 19 37 37 H 1.08000 * 119.04708 * 180.29212 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 3.4316 1.2917 0.0005 5 6 4.0161 2.5560 0.0011 6 7 5.3951 2.6937 0.0011 7 6 6.1928 1.5938 -0.1689 8 1 5.8728 0.7890 -0.8141 9 6 7.4158 1.5157 0.4838 10 7 7.6236 2.2163 1.5776 11 14 8.7665 0.4160 -0.1915 12 1 9.6046 1.1887 -1.1431 13 1 9.6114 -0.0740 0.9270 14 1 8.1571 -0.7410 -0.8953 15 6 5.9993 4.0158 0.1829 16 6 6.1863 4.6718 -1.1609 17 6 7.3647 4.4906 -1.8605 18 6 7.5344 5.0884 -3.0953 19 6 6.5296 5.8758 -3.6258 20 6 5.3532 6.0612 -2.9239 21 6 5.1814 5.4588 -1.6917 22 7 3.2293 3.6311 0.0067 23 6 1.9183 3.5080 0.0006 24 7 1.3292 2.3289 0.0001 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 4.0407 0.3998 0.0001 29 1 8.4981 2.2127 1.9970 30 1 5.3458 4.6321 0.8003 31 1 6.9671 3.9088 0.6727 32 1 8.1515 3.8793 -1.4438 33 1 8.4535 4.9439 -3.6435 34 1 6.6639 6.3465 -4.5886 35 1 4.5685 6.6767 -3.3383 36 1 4.2625 5.6040 -1.1431 37 1 1.3079 4.3989 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166994064.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:55 Heat of formation + Delta-G solvation = 37.008695 kcal Electronic energy + Delta-G solvation = -22144.838880 eV Core-core repulsion = 18887.514924 eV Total energy + Delta-G solvation = -3257.323957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68553 -40.18704 -39.24245 -37.81072 -34.34587 -33.10034 -32.74311 -31.64083 -31.12652 -28.20659 -27.86127 -26.03728 -24.68967 -23.29988 -23.14406 -21.95227 -19.95844 -18.84564 -18.35723 -17.49663 -17.16601 -16.90300 -16.30413 -16.00814 -15.86734 -15.80518 -15.58098 -15.10574 -15.01156 -14.61715 -14.20044 -14.12197 -13.64033 -13.25420 -13.09255 -12.96266 -12.78700 -12.58665 -12.36948 -12.17207 -11.95879 -11.72931 -11.52885 -11.23054 -10.75900 -10.01456 -9.95216 -9.69403 -9.53253 -9.02529 -8.35563 -6.04868 0.49509 0.54556 0.63027 0.74402 1.40845 1.43039 1.51520 2.10190 2.26154 2.76881 2.86459 3.16758 3.32732 3.56313 3.91054 4.10765 4.16780 4.27720 4.41708 4.47031 4.49613 4.54275 4.60371 4.75788 4.79322 4.82340 4.88163 4.99883 5.17964 5.23088 5.30877 5.33218 5.42632 5.68428 5.70538 5.93222 6.06535 6.23115 6.26470 6.43632 6.66366 7.20771 7.36532 7.81607 8.56566 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.012250 B = 0.007157 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.160074 B = 3911.091489 C = 5560.876728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.325 6.325 3 C 0.370 3.630 4 C -0.345 4.345 5 C 0.400 3.600 6 N -0.406 5.406 7 C -0.330 4.330 8 H 0.082 0.918 9 C 0.012 3.988 10 N -0.877 5.877 11 Si 0.975 3.025 12 H -0.264 1.264 13 H -0.278 1.278 14 H -0.266 1.266 15 C 0.158 3.842 16 C -0.102 4.102 17 C -0.118 4.118 18 C -0.133 4.133 19 C -0.124 4.124 20 C -0.131 4.131 21 C -0.110 4.110 22 N -0.612 5.612 23 C 0.356 3.644 24 N -0.646 5.646 25 H 0.122 0.878 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.119 0.881 29 H 0.277 0.723 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.139 0.861 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.127 0.873 37 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.739 4.128 -6.581 9.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.231 6.231 3 C 0.189 3.811 4 C -0.376 4.376 5 C 0.157 3.843 6 N -0.096 5.096 7 C -0.459 4.459 8 H 0.100 0.900 9 C -0.193 4.193 10 N -0.512 5.512 11 Si 0.798 3.202 12 H -0.189 1.189 13 H -0.203 1.203 14 H -0.190 1.190 15 C 0.035 3.965 16 C -0.103 4.103 17 C -0.136 4.136 18 C -0.151 4.151 19 C -0.142 4.142 20 C -0.149 4.149 21 C -0.129 4.129 22 N -0.343 5.343 23 C 0.065 3.935 24 N -0.385 5.385 25 H 0.141 0.859 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.137 0.863 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.157 0.843 34 H 0.168 0.832 35 H 0.161 0.839 36 H 0.145 0.855 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -4.697 4.560 -6.350 9.120 hybrid contribution 0.997 -1.402 0.200 1.732 sum -3.699 3.158 -6.150 7.841 Atomic orbital electron populations 1.23048 0.75651 1.04403 1.02373 1.86165 1.24700 1.24683 1.87554 1.19648 0.88507 0.85243 0.87670 1.20734 0.92791 0.98707 1.25383 1.18759 0.86698 0.88467 0.90378 1.42458 0.99234 1.06583 1.61295 1.19547 1.00570 0.99787 1.25976 0.90028 1.26049 1.01058 0.99082 0.93128 1.70082 1.24149 1.42064 1.14896 0.85201 0.77988 0.78786 0.78254 1.18859 1.20341 1.18997 1.20402 1.00616 0.82283 0.93180 1.20406 0.94779 0.97430 0.97685 1.21114 0.97207 0.99327 0.95997 1.21352 1.00415 0.98145 0.95163 1.21434 0.93360 0.98785 1.00641 1.21434 0.98546 1.00354 0.94564 1.21363 0.98360 0.96565 0.96582 1.67942 1.06667 1.31861 1.27863 1.24831 0.87519 0.94443 0.86674 1.68026 1.40648 0.98678 1.31165 0.85941 0.92482 0.92326 0.86307 0.91324 0.92269 0.88595 0.88038 0.84341 0.83240 0.83853 0.85541 0.75964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.05 10.41 113.37 1.18 2.23 16 2 O -0.32 -12.25 10.49 -88.48 -0.93 -13.18 16 3 C 0.37 15.78 7.52 84.69 0.64 16.41 16 4 C -0.34 -16.65 9.28 22.70 0.21 -16.44 16 5 C 0.40 19.54 7.32 133.00 0.97 20.52 16 6 N -0.41 -20.49 2.62 -521.47 -1.37 -21.86 16 7 C -0.33 -17.18 8.43 84.04 0.71 -16.48 16 8 H 0.08 4.33 7.09 -2.91 -0.02 4.31 16 9 C 0.01 0.58 4.94 84.88 0.42 1.00 16 10 N -0.88 -45.41 11.34 21.65 0.25 -45.16 16 11 Si 0.97 39.51 29.61 68.60 2.03 41.54 16 12 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 13 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 14 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 15 C 0.16 7.43 5.11 85.63 0.44 7.87 16 16 C -0.10 -4.21 5.46 -19.87 -0.11 -4.31 16 17 C -0.12 -4.56 9.70 22.27 0.22 -4.35 16 18 C -0.13 -4.15 10.05 22.27 0.22 -3.92 16 19 C -0.12 -3.42 10.05 22.27 0.22 -3.19 16 20 C -0.13 -3.89 10.05 22.27 0.22 -3.67 16 21 C -0.11 -4.01 9.49 22.27 0.21 -3.80 16 22 N -0.61 -26.26 8.17 -197.72 -1.62 -27.87 16 23 C 0.36 13.06 12.28 180.91 2.22 15.28 16 24 N -0.65 -24.97 9.38 -313.03 -2.94 -27.90 16 25 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.06 1.48 8.12 -2.39 -0.02 1.46 16 27 H 0.06 1.50 8.12 -2.38 -0.02 1.48 16 28 H 0.12 6.02 6.72 -2.91 -0.02 6.00 16 29 H 0.28 13.39 8.32 -92.71 -0.77 12.61 16 30 H 0.06 2.79 7.48 -2.39 -0.02 2.77 16 31 H 0.10 4.85 5.28 -2.39 -0.01 4.84 16 32 H 0.10 4.17 8.06 -2.91 -0.02 4.14 16 33 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 34 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 36 H 0.13 4.63 7.07 -2.91 -0.02 4.60 16 37 H 0.22 5.86 8.06 -2.91 -0.02 5.84 16 Total: -1.00 -61.30 319.65 4.29 -57.01 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 1.08 Total: 30.27 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 7.78 Total: 7.14 kcal Atomic # 7 Polarization: -117.12 SS G_CDS: -5.67 Total: -122.79 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.93 Total: -13.18 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -61.30 4.29 -57.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166994064.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.019 kcal (2) G-P(sol) polarization free energy of solvation -61.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds