Wall clock time and date at job start Tue Mar 31 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47275 * 2 1 4 4 C 1.53002 * 109.47113 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46977 * 180.02562 * 4 3 2 6 6 C 1.36905 * 120.00096 * 269.99899 * 5 4 3 7 7 H 1.07998 * 119.99621 * 6.38753 * 6 5 4 8 8 C 1.38828 * 119.99918 * 186.39300 * 6 5 4 9 9 N 1.31544 * 120.00607 * 6.95166 * 8 6 5 10 10 Si 1.86806 * 119.99736 * 186.95267 * 8 6 5 11 11 H 1.48501 * 109.47119 * 354.99396 * 10 8 6 12 12 H 1.48498 * 109.47180 * 114.99741 * 10 8 6 13 13 H 1.48500 * 109.47027 * 234.99699 * 10 8 6 14 14 C 1.38265 * 120.00252 * 90.00319 * 5 4 3 15 15 N 1.33165 * 120.83353 * 263.56904 * 14 5 4 16 16 C 1.31945 * 120.94893 * 180.02562 * 15 14 5 17 17 N 1.31639 * 122.71077 * 359.93642 * 16 15 14 18 18 C 1.33138 * 120.74031 * 0.02562 * 17 16 15 19 19 N 1.37062 * 134.06511 * 180.02562 * 18 17 16 20 20 H 0.97008 * 124.74976 * 359.97139 * 19 18 17 21 21 C 1.36000 * 110.50223 * 179.70369 * 19 18 17 22 22 C 1.36396 * 109.63077 * 0.45028 * 21 19 18 23 23 C 1.43205 * 126.83129 * 179.82939 * 22 21 19 24 24 N 5.79734 * 169.56666 * 341.41392 * 2 1 3 25 25 C 1.40077 * 120.84317 * 83.49519 * 14 5 4 26 26 H 1.09006 * 109.46724 * 59.99738 * 1 2 3 27 27 H 1.08995 * 109.47213 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47343 * 300.00137 * 1 2 3 29 29 H 1.09000 * 109.47617 * 240.00327 * 2 1 3 30 30 H 1.09003 * 109.47032 * 119.99860 * 2 1 3 31 31 H 1.08997 * 109.47083 * 60.00160 * 3 2 1 32 32 H 1.08995 * 109.47183 * 300.00162 * 3 2 1 33 33 H 1.08997 * 109.47018 * 60.00117 * 4 3 2 34 34 H 1.09003 * 109.47111 * 299.99809 * 4 3 2 35 35 H 0.96996 * 120.00166 * 184.99393 * 9 8 6 36 36 H 1.08010 * 118.64469 * 179.97438 * 16 15 14 37 37 H 1.07995 * 125.18856 * 180.28629 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2860 3.4698 -1.1854 7 1 4.0092 3.0006 -2.1179 8 6 4.8729 4.7279 -1.1886 9 7 5.3345 5.2413 -0.0689 10 14 5.0070 5.6919 -2.7831 11 1 4.5285 4.8524 -3.9107 12 1 4.1751 6.9186 -2.6914 13 1 6.4240 6.0709 -3.0146 14 6 4.2894 3.4748 1.1976 15 7 3.3691 4.2795 1.7256 16 6 3.5874 4.9024 2.8681 17 7 4.7069 4.7703 3.5478 18 6 5.6860 3.9866 3.1008 19 7 6.9307 3.6550 3.5692 20 1 7.3178 3.9877 4.3941 21 6 7.5447 2.7895 2.7186 22 6 6.7270 2.5318 1.6578 23 6 7.0083 1.6751 0.5453 24 7 7.2314 0.9951 -0.3346 25 6 5.4966 3.3034 1.8870 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9329 0.9288 -0.8908 34 1 3.9337 0.9285 0.8891 35 1 5.6783 6.1482 -0.0567 36 1 2.8153 5.5468 3.2623 37 1 8.5306 2.3720 2.8600 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167131393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:07 Heat of formation + Delta-G solvation = 130.069087 kcal Electronic energy + Delta-G solvation = -22705.319800 eV Core-core repulsion = 19484.323996 eV Total energy + Delta-G solvation = -3220.995804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.03320 -38.01366 -36.52824 -35.52981 -34.28335 -31.85991 -31.25702 -30.44307 -28.84261 -27.74219 -24.72776 -23.48338 -22.53817 -22.21025 -21.22145 -20.42879 -18.57227 -17.47421 -16.13768 -15.89225 -15.44220 -14.92475 -14.77810 -14.45860 -14.01712 -13.64773 -13.51236 -13.41648 -13.02641 -12.69543 -12.33567 -12.22006 -12.05734 -11.87499 -11.68148 -11.31054 -11.16472 -10.84907 -10.73782 -10.59083 -10.38065 -10.07337 -9.92147 -9.79539 -9.43114 -9.06746 -8.20814 -8.14684 -7.46098 -7.22594 -5.87739 -3.43687 1.65382 2.37026 2.78448 3.18519 3.33762 3.39556 3.41498 3.54573 4.29592 4.31736 4.76588 4.79846 5.02243 5.18762 5.21788 5.31649 5.36004 5.43188 5.55288 5.73725 5.85995 5.90297 6.12314 6.17800 6.18912 6.24505 6.30389 6.37040 6.44566 6.53929 6.84373 6.87936 6.96048 7.05489 7.46220 7.58033 7.65584 8.09616 8.31345 8.40796 9.06060 9.40911 9.61893 9.96302 11.10153 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.010647 B = 0.008558 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.121162 B = 3270.912557 C = 4030.016083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.138 4.138 4 C 0.158 3.842 5 N -0.552 5.552 6 C -0.248 4.248 7 H 0.087 0.913 8 C 0.003 3.997 9 N -0.900 5.900 10 Si 0.920 3.080 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.290 1.290 14 C 0.596 3.404 15 N -0.556 5.556 16 C 0.330 3.670 17 N -0.570 5.570 18 C 0.310 3.690 19 N -0.566 5.566 20 H 0.417 0.583 21 C 0.089 3.911 22 C -0.075 4.075 23 C 0.307 3.693 24 N -0.445 5.445 25 C -0.143 4.143 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.039 0.961 35 H 0.261 0.739 36 H 0.177 0.823 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.311 -5.357 7.854 9.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.178 4.178 4 C 0.033 3.967 5 N -0.270 5.270 6 C -0.375 4.375 7 H 0.105 0.895 8 C -0.194 4.194 9 N -0.545 5.545 10 Si 0.750 3.250 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.217 1.217 14 C 0.354 3.646 15 N -0.278 5.278 16 C 0.039 3.961 17 N -0.294 5.294 18 C 0.073 3.927 19 N -0.172 5.172 20 H 0.255 0.745 21 C -0.045 4.045 22 C -0.089 4.089 23 C -0.007 4.007 24 N -0.122 5.122 25 C -0.156 4.156 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.194 0.806 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.435 -5.623 6.913 8.922 hybrid contribution 0.811 1.024 -0.466 1.386 sum 0.376 -4.599 6.447 7.928 Atomic orbital electron populations 1.21744 0.96438 1.00647 1.01733 1.21496 0.95382 0.97945 1.01276 1.22198 0.97954 0.94923 1.02676 1.20878 0.92165 0.83752 0.99934 1.41289 1.75260 1.09773 1.00697 1.19359 1.34065 1.00118 0.84001 0.89474 1.24808 0.98465 0.98318 0.97826 1.69179 1.45005 1.15523 1.24840 0.85920 0.77176 0.79862 0.82075 1.20213 1.21448 1.21704 1.17089 0.83901 0.80689 0.82895 1.68556 1.35696 1.11373 1.12167 1.24019 0.90948 0.94058 0.87122 1.67197 1.01859 1.22171 1.38124 1.18158 0.87269 0.95794 0.91492 1.41054 1.13002 1.40439 1.22667 0.74523 1.21598 0.97755 0.94838 0.90263 1.15644 0.96418 1.03847 0.93015 1.24341 0.92626 0.91770 0.92006 1.81005 1.09165 1.12518 1.09554 1.20293 0.95751 1.02327 0.97259 0.92898 0.93506 0.92964 0.92436 0.92685 0.92136 0.91686 0.92188 0.94255 0.92619 0.80632 0.80205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.15 0.37 -1.51 16 2 C -0.12 -1.77 5.93 -26.73 -0.16 -1.92 16 3 C -0.14 -2.47 5.54 -26.73 -0.15 -2.62 16 4 C 0.16 3.22 5.65 -4.04 -0.02 3.19 16 5 N -0.55 -13.23 2.44 -114.78 -0.28 -13.51 16 6 C -0.25 -6.51 9.78 -15.07 -0.15 -6.66 16 7 H 0.09 2.26 7.84 -52.49 -0.41 1.85 16 8 C 0.00 0.09 5.40 -17.46 -0.09 -0.01 16 9 N -0.90 -24.73 9.84 55.49 0.55 -24.18 16 10 Si 0.92 22.00 29.56 -169.99 -5.03 16.97 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 C 0.60 14.19 3.68 -154.72 -0.57 13.62 16 15 N -0.56 -13.05 10.24 -13.72 -0.14 -13.19 16 16 C 0.33 6.78 12.23 -92.16 -1.13 5.66 16 17 N -0.57 -11.45 10.47 -13.89 -0.15 -11.60 16 18 C 0.31 6.08 8.47 -155.70 -1.32 4.77 16 19 N -0.57 -8.25 5.97 -11.90 -0.07 -8.32 16 20 H 0.42 4.44 8.96 -40.82 -0.37 4.07 16 21 C 0.09 1.26 11.80 -16.37 -0.19 1.06 16 22 C -0.08 -1.46 6.12 -105.07 -0.64 -2.10 16 23 C 0.31 6.33 15.67 -22.53 -0.35 5.98 16 24 N -0.45 -9.62 18.53 41.77 0.77 -8.85 16 25 C -0.14 -3.13 5.28 -104.77 -0.55 -3.68 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.23 8.04 -51.93 -0.42 0.81 16 34 H 0.04 0.77 8.04 -51.93 -0.42 0.35 16 35 H 0.26 7.23 8.32 -40.82 -0.34 6.89 16 36 H 0.18 2.95 8.06 -52.48 -0.42 2.52 16 37 H 0.18 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 328.15 15.07 4.95 4.95 Total: -1.00 -31.80 328.15 -8.91 -40.71 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.55 Total: 1.24 kcal Atomic # 6 Polarization: 20.75 SS G_CDS: -4.96 Total: 15.79 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: 0.68 Total: -79.65 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.80 -8.91 -40.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167131393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.778 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds