Wall clock time and date at job start Tue Mar 31 2020 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46822 * 2 1 4 4 C 1.52999 * 109.46945 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47543 * 179.97438 * 4 3 2 6 6 C 1.36964 * 120.00191 * 264.52552 * 5 4 3 7 7 H 1.08008 * 120.00142 * 146.31410 * 6 5 4 8 8 C 1.38795 * 120.00078 * 326.31897 * 6 5 4 9 9 N 1.31562 * 120.00035 * 337.37016 * 8 6 5 10 10 Si 1.86799 * 120.00174 * 157.37252 * 8 6 5 11 11 H 1.48499 * 109.47228 * 90.00297 * 10 8 6 12 12 H 1.48506 * 109.47342 * 209.99887 * 10 8 6 13 13 H 1.48500 * 109.47518 * 330.00004 * 10 8 6 14 14 C 1.38440 * 120.00329 * 84.52282 * 5 4 3 15 15 N 1.32804 * 118.80033 * 0.02562 * 14 5 4 16 16 C 1.32227 * 121.02291 * 180.02562 * 15 14 5 17 17 C 1.39188 * 118.61648 * 0.02562 * 16 15 14 18 18 C 1.47186 * 135.04586 * 180.02562 * 17 16 15 19 19 C 1.43202 * 126.82434 * 359.97438 * 18 17 16 20 20 N 9.40776 * 107.10012 * 51.98118 * 2 1 3 21 21 C 1.36317 * 106.36099 * 179.97438 * 18 17 16 22 22 N 1.36054 * 109.72619 * 0.02562 * 21 18 17 23 23 H 0.96991 * 124.74685 * 180.02562 * 22 21 18 24 24 C 1.37086 * 110.51080 * 359.97438 * 22 21 18 25 25 N 1.32323 * 118.81039 * 180.26714 * 14 5 4 26 26 H 1.09001 * 109.47040 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46745 * 299.99909 * 1 2 3 28 28 H 1.08997 * 109.47401 * 59.99574 * 1 2 3 29 29 H 1.09004 * 109.46745 * 240.00091 * 2 1 3 30 30 H 1.08995 * 109.47335 * 119.99652 * 2 1 3 31 31 H 1.08999 * 109.47598 * 60.00052 * 3 2 1 32 32 H 1.09006 * 109.47335 * 299.99761 * 3 2 1 33 33 H 1.08996 * 109.47596 * 59.99823 * 4 3 2 34 34 H 1.09006 * 109.47356 * 299.99767 * 4 3 2 35 35 H 0.97001 * 120.00207 * 179.97438 * 9 8 6 36 36 H 1.08001 * 120.69149 * 179.97438 * 16 15 14 37 37 H 1.07996 * 125.14009 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.3928 3.4313 -1.1823 7 1 4.2277 4.4910 -1.3102 8 6 4.9439 2.6853 -2.2148 9 7 5.5513 1.5480 -1.9532 10 14 4.8233 3.2960 -3.9760 11 1 6.0039 4.1407 -4.2890 12 1 4.7863 2.1349 -4.9012 13 1 3.5840 4.0979 -4.1382 14 6 4.1817 3.5149 1.1919 15 7 3.8511 2.9027 2.3231 16 6 3.9514 3.5214 3.4873 17 6 4.4120 4.8347 3.5068 18 6 4.6592 5.8364 4.5565 19 6 4.4587 5.6712 5.9648 20 7 4.2963 5.5383 7.0839 21 6 5.1169 6.9527 3.9220 22 7 5.1726 6.7285 2.5812 23 1 5.4682 7.3776 1.9240 24 6 4.7537 5.4563 2.2891 25 7 4.6202 4.7630 1.1634 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9330 0.9289 -0.8908 34 1 3.9337 0.9286 0.8892 35 1 5.9362 1.0264 -2.6748 36 1 3.6806 3.0185 4.4040 37 1 5.3935 7.8756 4.4098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:10 Heat of formation + Delta-G solvation = 120.327793 kcal Electronic energy + Delta-G solvation = -21615.850122 eV Core-core repulsion = 18394.431904 eV Total energy + Delta-G solvation = -3221.418218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.14103 -38.49850 -36.31179 -36.05764 -34.13138 -32.64868 -31.92555 -30.57280 -28.92030 -27.83196 -25.11904 -23.43978 -23.15403 -22.51388 -21.02418 -20.34439 -18.36270 -17.86213 -16.31592 -16.21442 -15.62246 -15.14205 -14.97200 -14.75393 -14.40594 -13.74536 -13.61303 -13.39720 -13.15173 -12.97049 -12.63918 -12.60528 -12.31882 -12.16559 -12.00178 -11.59282 -11.36306 -11.17496 -10.71744 -10.54632 -10.43941 -10.29278 -10.10156 -9.96687 -9.84937 -9.22798 -8.63910 -8.14048 -8.04657 -6.94307 -6.46948 -3.99295 1.38542 2.21003 2.49814 2.88741 3.06938 3.09548 3.15007 3.19929 3.84514 3.90051 4.29944 4.50738 4.64012 4.96910 5.03279 5.14392 5.38082 5.44282 5.51925 5.61098 5.68027 5.83200 6.01212 6.11136 6.20263 6.31065 6.33338 6.45907 6.62169 6.62969 6.65777 6.76423 6.97246 7.24029 7.29504 7.42132 7.54096 7.83997 7.89535 8.17180 8.40452 8.99744 9.19814 9.74221 10.47217 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.005286 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.858829 B = 5295.717877 C = 6762.941907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.128 4.128 4 C 0.124 3.876 5 N -0.381 5.381 6 C -0.288 4.288 7 H 0.101 0.899 8 C 0.034 3.966 9 N -0.855 5.855 10 Si 0.925 3.075 11 H -0.275 1.275 12 H -0.280 1.280 13 H -0.267 1.267 14 C 0.527 3.473 15 N -0.571 5.571 16 C 0.236 3.764 17 C -0.287 4.287 18 C -0.090 4.090 19 C 0.299 3.701 20 N -0.454 5.454 21 C 0.098 3.902 22 N -0.572 5.572 23 H 0.421 0.579 24 C 0.383 3.617 25 N -0.587 5.587 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.111 0.889 34 H 0.061 0.939 35 H 0.272 0.728 36 H 0.151 0.849 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.127 4.388 3.388 6.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.167 4.167 4 C 0.000 4.000 5 N -0.073 5.073 6 C -0.418 4.418 7 H 0.119 0.881 8 C -0.173 4.173 9 N -0.490 5.490 10 Si 0.750 3.250 11 H -0.201 1.201 12 H -0.206 1.206 13 H -0.192 1.192 14 C 0.174 3.826 15 N -0.292 5.292 16 C 0.056 3.944 17 C -0.302 4.302 18 C -0.104 4.104 19 C -0.015 4.015 20 N -0.132 5.132 21 C -0.036 4.036 22 N -0.180 5.180 23 H 0.259 0.741 24 C 0.137 3.863 25 N -0.321 5.321 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.168 0.832 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.365 3.326 3.610 5.952 hybrid contribution 0.415 1.141 -0.758 1.431 sum -2.951 4.467 2.853 6.066 Atomic orbital electron populations 1.21754 0.96584 1.00730 1.01497 1.21407 0.95020 0.97467 1.01715 1.21934 0.97412 0.95765 1.01571 1.21632 0.91432 0.82609 1.04351 1.42370 1.53078 1.11172 1.00717 1.19626 1.38935 0.95905 0.87319 0.88094 1.25455 0.94350 0.96510 1.00935 1.70014 1.30771 1.14753 1.33463 0.85964 0.79191 0.78512 0.81306 1.20117 1.20581 1.19158 1.19201 0.91595 0.85685 0.86096 1.68006 1.25515 1.37796 0.97881 1.22051 0.88594 0.88552 0.95162 1.19557 1.19962 0.97888 0.92836 1.15519 1.14795 0.95865 0.84244 1.24872 0.92206 0.92908 0.91468 1.81325 1.11578 1.08471 1.11793 1.21559 1.01534 0.98502 0.81969 1.41128 1.58037 1.11800 1.07070 0.74130 1.17995 0.93093 0.85421 0.89795 1.66749 1.29582 1.08709 1.27087 0.93371 0.93057 0.93073 0.92248 0.92193 0.92563 0.92392 0.87143 0.92031 0.91761 0.83191 0.80219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.83 5.93 -26.73 -0.16 -1.99 16 3 C -0.13 -2.42 5.51 -26.73 -0.15 -2.56 16 4 C 0.12 2.73 4.88 -4.04 -0.02 2.71 16 5 N -0.38 -9.33 2.65 -117.04 -0.31 -9.64 16 6 C -0.29 -7.31 8.95 -15.05 -0.13 -7.45 16 7 H 0.10 2.61 7.62 -52.48 -0.40 2.21 16 8 C 0.03 0.83 4.91 -17.46 -0.09 0.75 16 9 N -0.85 -21.72 11.35 55.49 0.63 -21.09 16 10 Si 0.92 19.06 29.61 -169.99 -5.03 14.02 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 13 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 14 C 0.53 12.48 8.10 -322.58 -2.61 9.87 16 15 N -0.57 -12.27 9.16 -13.75 -0.13 -12.40 16 16 C 0.24 4.35 11.36 -17.03 -0.19 4.16 16 17 C -0.29 -5.06 6.40 -104.90 -0.67 -5.73 16 18 C -0.09 -1.28 6.12 -105.03 -0.64 -1.92 16 19 C 0.30 4.37 15.88 -22.39 -0.36 4.01 16 20 N -0.45 -7.31 18.55 41.94 0.78 -6.53 16 21 C 0.10 1.08 11.79 -16.37 -0.19 0.89 16 22 N -0.57 -7.55 5.97 -11.87 -0.07 -7.62 16 23 H 0.42 4.35 8.96 -40.82 -0.37 3.98 16 24 C 0.38 7.14 8.47 -155.77 -1.32 5.83 16 25 N -0.59 -13.31 9.36 -13.15 -0.12 -13.44 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.11 2.62 5.34 -51.93 -0.28 2.34 16 34 H 0.06 1.38 7.50 -51.93 -0.39 0.99 16 35 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 36 H 0.15 2.30 8.06 -52.49 -0.42 1.87 16 37 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 327.04 15.07 4.93 4.93 Total: -1.00 -29.34 327.04 -9.87 -39.21 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.37 Total: 5.59 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: -6.17 Total: 6.95 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: 0.78 Total: -70.71 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.34 -9.87 -39.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.537 kcal (2) G-P(sol) polarization free energy of solvation -29.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds